RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 CREBZFQ9NS37 354 aa9.41□□□□□ -0.9
SPG11-220ENST00000559933 PLEKHG5O94827 1062 aa9.4□□□□□ -0.9
SPG11-220ENST00000559933 CC2D2AQ9P2K1 1620 aa9.4□□□□□ -0.9
SPG11-220ENST00000559933 C19orf67A6NJJ6 358 aa9.38□□□□□ -0.91
SPG11-220ENST00000559933 NPM1P06748 294 aaKnown RBP eCLIP9.37□□□□□ -0.91
SPG11-220ENST00000559933 ATAD2BQ9ULI0 1458 aa9.36□□□□□ -0.91
SPG11-220ENST00000559933 PEG3Q9GZU2 1588 aa9.34□□□□□ -0.91
SPG11-220ENST00000559933 CD44P16070 742 aaKnown RBP9.34□□□□□ -0.91
SPG11-220ENST00000559933 MIER1Q8N108 512 aa9.34□□□□□ -0.91
SPG11-220ENST00000559933 EVX2Q03828 476 aa9.32□□□□□ -0.92
SPG11-220ENST00000559933 FBXO3Q9UK99 471 aa9.32□□□□□ -0.92
SPG11-220ENST00000559933 SMARCA2P51531 1590 aa9.32□□□□□ -0.92
SPG11-220ENST00000559933 PAK3O75914 559 aaPredicted RBP9.31□□□□□ -0.92
SPG11-220ENST00000559933 PLCD3Q8N3E9 789 aa9.31□□□□□ -0.92
SPG11-220ENST00000559933 TOP2AP11388 1531 aaKnown RBP9.31□□□□□ -0.92
SPG11-220ENST00000559933 BAZ1BQ9UIG0 1483 aaKnown RBP9.3□□□□□ -0.92
SPG11-220ENST00000559933 HMGXB3Q12766 1538 aa9.27□□□□□ -0.93
SPG11-220ENST00000559933 NCAPD3P42695 1498 aa9.27□□□□□ -0.93
SPG11-220ENST00000559933 ZBTB47Q9UFB7 747 aaPredicted RBP9.25□□□□□ -0.93
SPG11-220ENST00000559933 ZRANB1Q9UGI0 708 aa9.25□□□□□ -0.93
SPG11-220ENST00000559933 MNX1P50219 401 aaPredicted RBP9.23□□□□□ -0.93
SPG11-220ENST00000559933 CLCN6P51797 869 aa9.21□□□□□ -0.94
SPG11-220ENST00000559933 GABBR2O75899 941 aa9.2□□□□□ -0.94
SPG11-220ENST00000559933 CCDC88BA6NC98 1476 aa9.2□□□□□ -0.94
SPG11-220ENST00000559933 ZNF579Q8NAF0 562 aaKnown RBP9.18□□□□□ -0.94
SPG11-220ENST00000559933 TSPYL2Q9H2G4 693 aaPredicted RBP9.15□□□□□ -0.94
SPG11-220ENST00000559933 VASPP50552 380 aaPredicted RBP9.13□□□□□ -0.95
SPG11-220ENST00000559933 KLHL34Q8N239 644 aa9.12□□□□□ -0.95
SPG11-220ENST00000559933 NESP48681 1621 aa9.11□□□□□ -0.95
SPG11-220ENST00000559933 PHF12Q96QT6 1004 aa9.1□□□□□ -0.95
SPG11-220ENST00000559933 DCBLD2Q96PD2 775 aa9.09□□□□□ -0.95
SPG11-220ENST00000559933 RASEFQ8IZ41 740 aa9.07□□□□□ -0.96
SPG11-220ENST00000559933 FAM212AQ96EL1 285 aa9.07□□□□□ -0.96
SPG11-220ENST00000559933 CFTRP13569 1480 aa9.03□□□□□ -0.96
SPG11-220ENST00000559933 NUBP1P53384 320 aa9.03□□□□□ -0.96
SPG11-220ENST00000559933 CCDC61Q9Y6R9 512 aa9.03□□□□□ -0.96
SPG11-220ENST00000559933 CADPSQ9ULU8 1353 aa9.02□□□□□ -0.97
SPG11-220ENST00000559933 GALR2O43603 387 aaPredicted RBP9.02□□□□□ -0.97
SPG11-220ENST00000559933 ABCC8Q09428 1581 aa9.01□□□□□ -0.97
SPG11-220ENST00000559933 PRDM2Q13029 1718 aa9.01□□□□□ -0.97
SPG11-220ENST00000559933 DCAF8Q5TAQ9 597 aa9.01□□□□□ -0.97
SPG11-220ENST00000559933 KIF21AQ7Z4S6 1674 aa9□□□□□ -0.97
SPG11-220ENST00000559933 LAMC3Q9Y6N6 1575 aa8.99□□□□□ -0.97
SPG11-220ENST00000559933 MS4A3Q96HJ5 214 aa8.98□□□□□ -0.97
SPG11-220ENST00000559933 KIF12Q96FN5 646 aa8.97□□□□□ -0.97
SPG11-220ENST00000559933 FANCD2Q9BXW9 1451 aa8.96□□□□□ -0.97
SPG11-220ENST00000559933 GSE1Q14687 1217 aa8.96□□□□□ -0.98
SPG11-220ENST00000559933 SPOCK2Q92563 424 aa8.95□□□□□ -0.98
SPG11-220ENST00000559933 MAP3K13O43283 966 aa8.94□□□□□ -0.98
SPG11-220ENST00000559933 SYNJ1O43426 1573 aa8.94□□□□□ -0.98
SPG11-220ENST00000559933 POTEIP0CG38 1075 aa8.93□□□□□ -0.98
SPG11-220ENST00000559933 IFNLR1Q8IU57 520 aaPredicted RBP8.93□□□□□ -0.98
SPG11-220ENST00000559933 PCDHB13Q9Y5F0 798 aa8.93□□□□□ -0.98
SPG11-220ENST00000559933 CEP164Q9UPV0 1460 aa8.92□□□□□ -0.98
SPG11-220ENST00000559933 SGIP1Q9BQI5 828 aa8.92□□□□□ -0.98
SPG11-220ENST00000559933 CUX1P39880 1505 aa8.91□□□□□ -0.98
SPG11-220ENST00000559933 ERCC6Q03468 1493 aa8.91□□□□□ -0.98
SPG11-220ENST00000559933 URB2Q14146 1524 aaKnown RBP8.9□□□□□ -0.98
SPG11-220ENST00000559933 PDS5BQ9NTI5 1447 aa8.9□□□□□ -0.98
SPG11-220ENST00000559933 WRNQ14191 1432 aaPredicted RBP eCLIP8.89□□□□□ -0.99
SPG11-220ENST00000559933 PYGBP11216 843 aa8.89□□□□□ -0.99
SPG11-220ENST00000559933 CIZ1Q9ULV3 898 aaPredicted RBP8.89□□□□□ -0.99
SPG11-220ENST00000559933 THOC2Q8NI27 1593 aaKnown RBP8.88□□□□□ -0.99
SPG11-220ENST00000559933 BIVM-ERCC5R4GMW8 1640 aa8.87□□□□□ -0.99
SPG11-220ENST00000559933 MRC2Q9UBG0 1479 aa8.86□□□□□ -0.99
SPG11-220ENST00000559933 ASTLQ6HA08 431 aaPredicted RBP8.86□□□□□ -0.99
SPG11-220ENST00000559933 DNMBPQ6XZF7 1577 aa8.86□□□□□ -0.99
SPG11-220ENST00000559933 TOPBP1Q92547 1522 aa8.85□□□□□ -0.99
SPG11-220ENST00000559933 TOP2BQ02880 1626 aa8.85□□□□□ -0.99
SPG11-220ENST00000559933 ATMINO43313 823 aaPredicted RBP8.85□□□□□ -0.99
SPG11-220ENST00000559933 TIE1P35590 1138 aa8.85□□□□□ -0.99
SPG11-220ENST00000559933 LHX8Q68G74 356 aa8.85□□□□□ -0.99
SPG11-220ENST00000559933 IFNL1Q8IU54 200 aa8.84□□□□□ -0.99
SPG11-220ENST00000559933 SLC39A7Q92504 469 aa8.83□□□□□ -1
SPG11-220ENST00000559933 WDR62O43379 1518 aa8.83□□□□□ -1
SPG11-220ENST00000559933 FGD5Q6ZNL6 1462 aa8.83□□□□□ -1
SPG11-220ENST00000559933 TRIM41Q8WV44 630 aa8.82□□□□□ -1
SPG11-220ENST00000559933 BMP2KQ9NSY1 1161 aaPredicted RBP8.82□□□□□ -1
SPG11-220ENST00000559933 C7P10643 843 aa8.81□□□□□ -1
SPG11-220ENST00000559933 ATN1P54259 1190 aaPredicted RBP8.81□□□□□ -1
SPG11-220ENST00000559933 ZNF467Q7Z7K2 595 aaPredicted RBP8.81□□□□□ -1
SPG11-220ENST00000559933 TRPC6Q9Y210 931 aa8.81□□□□□ -1
SPG11-220ENST00000559933 CHRM1P11229 460 aaPredicted RBP8.8□□□□□ -1
SPG11-220ENST00000559933 METRNQ9UJH8 293 aa8.8□□□□□ -1
SPG11-220ENST00000559933 POLA1P09884 1462 aaPredicted RBP8.8□□□□□ -1
SPG11-220ENST00000559933 RAD54L2Q9Y4B4 1467 aa8.8□□□□□ -1
SPG11-220ENST00000559933 TTLL13PA6NNM8 815 aa8.79□□□□□ -1
SPG11-220ENST00000559933 PELP1Q8IZL8 1130 aaKnown RBP8.79□□□□□ -1
SPG11-220ENST00000559933 TMEM106CQ9BVX2 250 aa8.79□□□□□ -1
SPG11-220ENST00000559933 PCDHB8Q9UN66 801 aa8.78□□□□□ -1
SPG11-220ENST00000559933 CUX2O14529 1486 aa8.77□□□□□ -1
SPG11-220ENST00000559933 RUSC2Q8N2Y8 1516 aa8.77□□□□□ -1.01
SPG11-220ENST00000559933 SOGA1O94964 1423 aa8.76□□□□□ -1.01
SPG11-220ENST00000559933 WDR97A6NE52 1622 aa8.76□□□□□ -1.01
SPG11-220ENST00000559933 SEC24BO95487 1268 aa8.75□□□□□ -1.01
SPG11-220ENST00000559933 TRIM35Q9UPQ4 493 aa8.75□□□□□ -1.01
SPG11-220ENST00000559933 TARBP1Q13395 1621 aaKnown RBP8.75□□□□□ -1.01
SPG11-220ENST00000559933 FAM9AQ8IZU1 332 aaPredicted RBP8.74□□□□□ -1.01
SPG11-220ENST00000559933 ZNF608Q9ULD9 1512 aaPredicted RBP8.74□□□□□ -1.01
SPG11-220ENST00000559933 GOLGA2Q08379 1002 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms