RNA–Protein interactions for RNA: ENST00000559694.5

CARMIL3-202, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 5

Gene CARMIL3, Length 4,319 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-202ENST00000559694 PEG3Q9GZU2 1588 aa15.16■□□□□ 0.02
CARMIL3-202ENST00000559694 NEFLP07196 543 aa15.16■□□□□ 0.02
CARMIL3-202ENST00000559694 BCANQ96GW7 911 aa15.15■□□□□ 0.02
CARMIL3-202ENST00000559694 CFDP1Q9UEE9 299 aaPredicted RBP15.15■□□□□ 0.02
CARMIL3-202ENST00000559694 SCAF1Q9H7N4 1312 aaKnown RBP15.15■□□□□ 0.02
CARMIL3-202ENST00000559694 JPH4Q96JJ6 628 aa15.14■□□□□ 0.01
CARMIL3-202ENST00000559694 TRHP20396 242 aaPredicted RBP15.13■□□□□ 0.01
CARMIL3-202ENST00000559694 CFTRP13569 1480 aa15.12■□□□□ 0.01
CARMIL3-202ENST00000559694 RAD54L2Q9Y4B4 1467 aa15.12■□□□□ 0.01
CARMIL3-202ENST00000559694 CHGAP10645 457 aaKnown RBP15.12■□□□□ 0.01
CARMIL3-202ENST00000559694 FGD5Q6ZNL6 1462 aa15.11■□□□□ 0.01
CARMIL3-202ENST00000559694 HMGXB3Q12766 1538 aa15.11■□□□□ 0.01
CARMIL3-202ENST00000559694 RRP7BPQ9NSQ0 103 aa15.1■□□□□ 0.01
CARMIL3-202ENST00000559694 CARMIL2Q6F5E8 1435 aa15.1■□□□□ 0.01
CARMIL3-202ENST00000559694 RUSC2Q8N2Y8 1516 aa15.1■□□□□ 0.01
CARMIL3-202ENST00000559694 OSCARQ8IYS5 282 aa15.08■□□□□ 0.01
CARMIL3-202ENST00000559694 STAG3Q9UJ98 1225 aa15.08■□□□□ 0
CARMIL3-202ENST00000559694 RAPGEF2Q9Y4G8 1499 aa15.06■□□□□ 0
CARMIL3-202ENST00000559694 FHAD1B1AJZ9 1412 aa15.06■□□□□ 0
CARMIL3-202ENST00000559694 AQRO60306 1485 aaKnown RBP eCLIP15.06■□□□□ 0
CARMIL3-202ENST00000559694 GAPVD1Q14C86 1478 aa15.03■□□□□ -0
CARMIL3-202ENST00000559694 IGF1RP08069 1367 aa15.03■□□□□ -0
CARMIL3-202ENST00000559694 CYB5RLQ6IPT4 315 aa15.02□□□□□ -0.01
CARMIL3-202ENST00000559694 ARID4BQ4LE39 1312 aaPredicted RBP15□□□□□ -0.01
CARMIL3-202ENST00000559694 CCNB3Q8WWL7 1395 aa14.97□□□□□ -0.01
CARMIL3-202ENST00000559694 MRC2Q9UBG0 1479 aa14.96□□□□□ -0.01
CARMIL3-202ENST00000559694 KANK4Q5T7N3 995 aaPredicted RBP14.95□□□□□ -0.02
CARMIL3-202ENST00000559694 FHOD3Q2V2M9 1422 aa14.95□□□□□ -0.02
CARMIL3-202ENST00000559694 FMN1Q68DA7 1419 aa14.92□□□□□ -0.02
CARMIL3-202ENST00000559694 VPS8Q8N3P4 1428 aa14.92□□□□□ -0.02
CARMIL3-202ENST00000559694 TONSLQ96HA7 1378 aa14.91□□□□□ -0.02
CARMIL3-202ENST00000559694 TOPBP1Q92547 1522 aa14.91□□□□□ -0.02
CARMIL3-202ENST00000559694 ZNF316A6NFI3 1004 aaPredicted RBP14.91□□□□□ -0.02
CARMIL3-202ENST00000559694 KDM2AQ9Y2K7 1162 aa14.9□□□□□ -0.02
CARMIL3-202ENST00000559694 SENP3Q9H4L4 574 aaPredicted RBP14.9□□□□□ -0.02
CARMIL3-202ENST00000559694 PTPRGP23470 1445 aa14.89□□□□□ -0.03
CARMIL3-202ENST00000559694 SYNJ1O43426 1573 aa14.88□□□□□ -0.03
CARMIL3-202ENST00000559694 POLA1P09884 1462 aaPredicted RBP14.87□□□□□ -0.03
CARMIL3-202ENST00000559694 GRIN2BQ13224 1484 aa14.86□□□□□ -0.03
CARMIL3-202ENST00000559694 EFCAB2Q5VUJ9 269 aa14.85□□□□□ -0.03
CARMIL3-202ENST00000559694 MLECQ14165 292 aa14.85□□□□□ -0.03
CARMIL3-202ENST00000559694 IFT140Q96RY7 1462 aa14.84□□□□□ -0.03
CARMIL3-202ENST00000559694 CUX1P39880 1505 aa14.84□□□□□ -0.03
CARMIL3-202ENST00000559694 RGL3Q3MIN7 710 aa14.83□□□□□ -0.03
CARMIL3-202ENST00000559694 TOP2BQ02880 1626 aa14.83□□□□□ -0.04
CARMIL3-202ENST00000559694 LAMC3Q9Y6N6 1575 aa14.83□□□□□ -0.04
CARMIL3-202ENST00000559694 KIF21BO75037 1637 aa14.82□□□□□ -0.04
CARMIL3-202ENST00000559694 GGT6Q6P531 493 aa14.78□□□□□ -0.04
CARMIL3-202ENST00000559694 PPP1R15AO75807 674 aaPredicted RBP14.76□□□□□ -0.05
CARMIL3-202ENST00000559694 HNRNPMP52272 730 aaKnown RBP eCLIP14.76□□□□□ -0.05
CARMIL3-202ENST00000559694 DNMBPQ6XZF7 1577 aa14.75□□□□□ -0.05
CARMIL3-202ENST00000559694 ARHGAP35Q9NRY4 1499 aa14.74□□□□□ -0.05
CARMIL3-202ENST00000559694 ANP32CO43423 234 aa14.73□□□□□ -0.05
CARMIL3-202ENST00000559694 ERICH3Q5RHP9 1530 aa14.71□□□□□ -0.05
CARMIL3-202ENST00000559694 SNAPC4Q5SXM2 1469 aa14.71□□□□□ -0.05
CARMIL3-202ENST00000559694 BIVM-ERCC5R4GMW8 1640 aa14.71□□□□□ -0.06
CARMIL3-202ENST00000559694 PRG4Q92954 1404 aaPredicted RBP14.68□□□□□ -0.06
CARMIL3-202ENST00000559694 URB2Q14146 1524 aaKnown RBP14.68□□□□□ -0.06
CARMIL3-202ENST00000559694 FAM69CQ0P6D2 419 aa14.68□□□□□ -0.06
CARMIL3-202ENST00000559694 HIRIP3Q9BW71 556 aaPredicted RBP14.68□□□□□ -0.06
CARMIL3-202ENST00000559694 SIN3AQ96ST3 1273 aa14.68□□□□□ -0.06
CARMIL3-202ENST00000559694 CCDC18Q5T9S5 1454 aa14.66□□□□□ -0.06
CARMIL3-202ENST00000559694 SPAG9O60271 1321 aaKnown RBP14.66□□□□□ -0.06
CARMIL3-202ENST00000559694 KIF3BO15066 747 aa14.66□□□□□ -0.06
CARMIL3-202ENST00000559694 ABCA10Q8WWZ4 1543 aa14.64□□□□□ -0.07
CARMIL3-202ENST00000559694 DDX10Q13206 875 aaKnown RBP14.63□□□□□ -0.07
CARMIL3-202ENST00000559694 KANK1Q14678 1352 aa14.62□□□□□ -0.07
CARMIL3-202ENST00000559694 PRXQ9BXM0 1461 aa14.62□□□□□ -0.07
CARMIL3-202ENST00000559694 ZNF608Q9ULD9 1512 aaPredicted RBP14.62□□□□□ -0.07
CARMIL3-202ENST00000559694 RSPH4AQ5TD94 716 aa14.62□□□□□ -0.07
CARMIL3-202ENST00000559694 C14orf37Q86TY3 774 aa14.61□□□□□ -0.07
CARMIL3-202ENST00000559694 FOXD1Q16676 465 aa14.61□□□□□ -0.07
CARMIL3-202ENST00000559694 PKD2Q13563 968 aa14.6□□□□□ -0.07
CARMIL3-202ENST00000559694 ANKRD30AQ9BXX3 1397 aa14.59□□□□□ -0.07
CARMIL3-202ENST00000559694 MIER1Q8N108 512 aa14.58□□□□□ -0.07
CARMIL3-202ENST00000559694 EIF4G2P78344 907 aaKnown RBP eCLIP14.58□□□□□ -0.08
CARMIL3-202ENST00000559694 NUP155O75694 1391 aa14.58□□□□□ -0.08
CARMIL3-202ENST00000559694 SETD5Q9C0A6 1442 aa14.57□□□□□ -0.08
CARMIL3-202ENST00000559694 ZNF644Q9H582 1327 aaPredicted RBP14.55□□□□□ -0.08
CARMIL3-202ENST00000559694 SLC24A1O60721 1099 aa14.55□□□□□ -0.08
CARMIL3-202ENST00000559694 DCAF11Q8TEB1 546 aa14.55□□□□□ -0.08
CARMIL3-202ENST00000559694 CLSPNQ9HAW4 1339 aa14.55□□□□□ -0.08
CARMIL3-202ENST00000559694 PLEKHG5O94827 1062 aa14.55□□□□□ -0.08
CARMIL3-202ENST00000559694 RTL5Q5HYW3 569 aaPredicted RBP14.54□□□□□ -0.08
CARMIL3-202ENST00000559694 NEFMP07197 916 aa14.54□□□□□ -0.08
CARMIL3-202ENST00000559694 WASHC2CQ9Y4E1 1318 aa14.53□□□□□ -0.08
CARMIL3-202ENST00000559694 CARD11Q9BXL7 1154 aa14.53□□□□□ -0.08
CARMIL3-202ENST00000559694 PRDM2Q13029 1718 aa14.53□□□□□ -0.08
CARMIL3-202ENST00000559694 MPHOSPH9Q99550 1183 aa14.53□□□□□ -0.08
CARMIL3-202ENST00000559694 KIAA0586Q9BVV6 1533 aa14.52□□□□□ -0.08
CARMIL3-202ENST00000559694 SYNJ2O15056 1496 aa14.52□□□□□ -0.09
CARMIL3-202ENST00000559694 TMC1Q8TDI8 760 aa14.52□□□□□ -0.09
CARMIL3-202ENST00000559694 ARAP1Q96P48 1450 aa14.51□□□□□ -0.09
CARMIL3-202ENST00000559694 RAB3GAP2Q9H2M9 1393 aa14.51□□□□□ -0.09
CARMIL3-202ENST00000559694 FKBP8Q14318 412 aa14.49□□□□□ -0.09
CARMIL3-202ENST00000559694 POGKQ9P215 609 aa14.49□□□□□ -0.09
CARMIL3-202ENST00000559694 MAGI1Q96QZ7 1491 aaPredicted RBP14.48□□□□□ -0.09
CARMIL3-202ENST00000559694 HDGFP51858 240 aaKnown RBP14.48□□□□□ -0.09
CARMIL3-202ENST00000559694 CASKIN1Q8WXD9 1431 aa14.48□□□□□ -0.09
CARMIL3-202ENST00000559694 AFAP1Q8N556 730 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms