RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 FOXD1Q16676 465 aa7.33□□□□□ -1.24
SNX1-205ENST00000559339 ARAP1Q96P48 1450 aa7.32□□□□□ -1.24
SNX1-205ENST00000559339 CEP170Q5SW79 1584 aa7.32□□□□□ -1.24
SNX1-205ENST00000559339 CUL7Q14999 1698 aa7.32□□□□□ -1.24
SNX1-205ENST00000559339 KIAA0586Q9BVV6 1533 aa7.31□□□□□ -1.24
SNX1-205ENST00000559339 PRG4Q92954 1404 aaPredicted RBP7.3□□□□□ -1.24
SNX1-205ENST00000559339 TRHP20396 242 aaPredicted RBP7.3□□□□□ -1.24
SNX1-205ENST00000559339 RAPGEF2Q9Y4G8 1499 aa7.29□□□□□ -1.24
SNX1-205ENST00000559339 CSRNP3Q8WYN3 585 aa7.28□□□□□ -1.24
SNX1-205ENST00000559339 RUSC2Q8N2Y8 1516 aa7.27□□□□□ -1.25
SNX1-205ENST00000559339 NPM1P06748 294 aaKnown RBP eCLIP7.27□□□□□ -1.25
SNX1-205ENST00000559339 EEA1Q15075 1411 aa7.27□□□□□ -1.25
SNX1-205ENST00000559339 CARMIL2Q6F5E8 1435 aa7.27□□□□□ -1.25
SNX1-205ENST00000559339 FAM9AQ8IZU1 332 aaPredicted RBP7.26□□□□□ -1.25
SNX1-205ENST00000559339 SHROOM2Q13796 1616 aa7.26□□□□□ -1.25
SNX1-205ENST00000559339 PTPRGP23470 1445 aa7.24□□□□□ -1.25
SNX1-205ENST00000559339 ERCC6L2Q5T890 1561 aa7.24□□□□□ -1.25
SNX1-205ENST00000559339 TTBK1Q5TCY1 1321 aaPredicted RBP7.24□□□□□ -1.25
SNX1-205ENST00000559339 PRXQ9BXM0 1461 aa7.24□□□□□ -1.25
SNX1-205ENST00000559339 IQGAP2Q13576 1575 aa7.23□□□□□ -1.25
SNX1-205ENST00000559339 TNIKQ9UKE5 1360 aa7.22□□□□□ -1.25
SNX1-205ENST00000559339 GOLGA3Q08378 1498 aa7.19□□□□□ -1.26
SNX1-205ENST00000559339 UGGT2Q9NYU1 1516 aa7.18□□□□□ -1.26
SNX1-205ENST00000559339 UBTFP17480 764 aaKnown RBP7.18□□□□□ -1.26
SNX1-205ENST00000559339 DISP1Q96F81 1524 aa7.17□□□□□ -1.26
SNX1-205ENST00000559339 RANGAP1P46060 587 aaPredicted RBP7.17□□□□□ -1.26
SNX1-205ENST00000559339 UACAQ9BZF9 1416 aa7.17□□□□□ -1.26
SNX1-205ENST00000559339 FAM69CQ0P6D2 419 aa7.16□□□□□ -1.26
SNX1-205ENST00000559339 P3H3Q8IVL6 736 aa7.15□□□□□ -1.26
SNX1-205ENST00000559339 EHMT2Q96KQ7 1210 aa7.15□□□□□ -1.26
SNX1-205ENST00000559339 UHRF1BP1LA0JNW5 1464 aa7.14□□□□□ -1.27
SNX1-205ENST00000559339 KIAA0556O60303 1618 aa7.14□□□□□ -1.27
SNX1-205ENST00000559339 ABCC2Q92887 1545 aa7.14□□□□□ -1.27
SNX1-205ENST00000559339 CTTNBP2Q8WZ74 1663 aa7.13□□□□□ -1.27
SNX1-205ENST00000559339 ADCY10Q96PN6 1610 aa7.13□□□□□ -1.27
SNX1-205ENST00000559339 MAPKBP1O60336 1514 aa7.13□□□□□ -1.27
SNX1-205ENST00000559339 ABCC10Q5T3U5 1492 aa7.12□□□□□ -1.27
SNX1-205ENST00000559339 ADRA2BP18089 450 aa7.12□□□□□ -1.27
SNX1-205ENST00000559339 KIF21BO75037 1637 aa7.12□□□□□ -1.27
SNX1-205ENST00000559339 PLB1Q6P1J6 1458 aa7.11□□□□□ -1.27
SNX1-205ENST00000559339 ASXL2Q76L83 1435 aa7.11□□□□□ -1.27
SNX1-205ENST00000559339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.11□□□□□ -1.27
SNX1-205ENST00000559339 HNRNPUL2Q1KMD3 747 aaKnown RBP7.11□□□□□ -1.27
SNX1-205ENST00000559339 KDM5BQ9UGL1 1544 aa7.1□□□□□ -1.27
SNX1-205ENST00000559339 ARID3CA6NKF2 412 aa7.08□□□□□ -1.28
SNX1-205ENST00000559339 KCNH8Q96L42 1107 aa7.08□□□□□ -1.28
SNX1-205ENST00000559339 PPP6R1Q9UPN7 881 aa7.08□□□□□ -1.28
SNX1-205ENST00000559339 EFCAB5A4FU69 1503 aa7.07□□□□□ -1.28
SNX1-205ENST00000559339 FHOD3Q2V2M9 1422 aa7.07□□□□□ -1.28
SNX1-205ENST00000559339 SAMD9Q5K651 1589 aa7.07□□□□□ -1.28
SNX1-205ENST00000559339 WDR7Q9Y4E6 1490 aa7.06□□□□□ -1.28
SNX1-205ENST00000559339 PLEKHD1A6NEE1 506 aa7.06□□□□□ -1.28
SNX1-205ENST00000559339 ATP1B4Q9UN42 357 aaPredicted RBP7.06□□□□□ -1.28
SNX1-205ENST00000559339 FMN1Q68DA7 1419 aa7.06□□□□□ -1.28
SNX1-205ENST00000559339 ABCA8O94911 1581 aa7.06□□□□□ -1.28
SNX1-205ENST00000559339 DIP2BQ9P265 1576 aa7.06□□□□□ -1.28
SNX1-205ENST00000559339 CDK11AQ9UQ88 783 aaPredicted RBP7.05□□□□□ -1.28
SNX1-205ENST00000559339 EPRSP07814 1512 aaKnown RBP7.05□□□□□ -1.28
SNX1-205ENST00000559339 ATP10BO94823 1461 aa7.04□□□□□ -1.28
SNX1-205ENST00000559339 ZCCHC11Q5TAX3 1644 aaKnown RBP7.04□□□□□ -1.28
SNX1-205ENST00000559339 KIF13AQ9H1H9 1805 aa7.03□□□□□ -1.28
SNX1-205ENST00000559339 TEX14Q8IWB6 1497 aa7.03□□□□□ -1.28
SNX1-205ENST00000559339 GLI2P10070 1586 aa7.03□□□□□ -1.28
SNX1-205ENST00000559339 CD109Q6YHK3 1445 aa7.02□□□□□ -1.29
SNX1-205ENST00000559339 RAPGEF6Q8TEU7 1601 aa7.02□□□□□ -1.29
SNX1-205ENST00000559339 NUP153P49790 1475 aaKnown RBP7.02□□□□□ -1.29
SNX1-205ENST00000559339 ARHGAP35Q9NRY4 1499 aa7.02□□□□□ -1.29
SNX1-205ENST00000559339 CLIP1P30622 1438 aa7.01□□□□□ -1.29
SNX1-205ENST00000559339 PIAS4Q8N2W9 510 aaPredicted RBP6.99□□□□□ -1.29
SNX1-205ENST00000559339 KDM6BO15054 1643 aa6.98□□□□□ -1.29
SNX1-205ENST00000559339 PHLDB1Q86UU1 1377 aa6.98□□□□□ -1.29
SNX1-205ENST00000559339 MAGI3Q5TCQ9 1506 aa6.98□□□□□ -1.29
SNX1-205ENST00000559339 TSPOAP1O95153 1857 aa6.98□□□□□ -1.29
SNX1-205ENST00000559339 MAP3K4Q9Y6R4 1608 aa6.98□□□□□ -1.29
SNX1-205ENST00000559339 HECW1Q76N89 1606 aa6.97□□□□□ -1.29
SNX1-205ENST00000559339 CASKIN1Q8WXD9 1431 aa6.96□□□□□ -1.3
SNX1-205ENST00000559339 LOC105371045A0A1W2PR82 267 aa6.96□□□□□ -1.3
SNX1-205ENST00000559339 CFAP43Q8NDM7 1665 aa6.96□□□□□ -1.3
SNX1-205ENST00000559339 CEP162Q5TB80 1403 aa6.95□□□□□ -1.3
SNX1-205ENST00000559339 CCDC18Q5T9S5 1454 aa6.95□□□□□ -1.3
SNX1-205ENST00000559339 CDK13Q14004 1512 aaKnown RBP6.95□□□□□ -1.3
SNX1-205ENST00000559339 FYCO1Q9BQS8 1478 aa6.94□□□□□ -1.3
SNX1-205ENST00000559339 ABCA9Q8IUA7 1624 aa6.94□□□□□ -1.3
SNX1-205ENST00000559339 TROQ12816 1431 aaPredicted RBP6.93□□□□□ -1.3
SNX1-205ENST00000559339 NEO1Q92859 1461 aa6.93□□□□□ -1.3
SNX1-205ENST00000559339 COL17A1Q9UMD9 1497 aaPredicted RBP6.93□□□□□ -1.3
SNX1-205ENST00000559339 EFCAB2Q5VUJ9 269 aa6.93□□□□□ -1.3
SNX1-205ENST00000559339 PPRC1Q5VV67 1664 aaKnown RBP6.93□□□□□ -1.3
SNX1-205ENST00000559339 FANCAO15360 1455 aa6.92□□□□□ -1.3
SNX1-205ENST00000559339 ARAP3Q8WWN8 1544 aa6.92□□□□□ -1.3
SNX1-205ENST00000559339 RAPGEF3O95398 923 aa6.92□□□□□ -1.3
SNX1-205ENST00000559339 PLCH2O75038 1416 aa6.92□□□□□ -1.3
SNX1-205ENST00000559339 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.91□□□□□ -1.3
SNX1-205ENST00000559339 MTUS2Q5JR59 1369 aa6.91□□□□□ -1.3
SNX1-205ENST00000559339 AKNAQ7Z591 1439 aa6.91□□□□□ -1.3
SNX1-205ENST00000559339 APLP2Q06481 763 aa6.9□□□□□ -1.3
SNX1-205ENST00000559339 DENND4BO75064 1496 aaPredicted RBP6.9□□□□□ -1.31
SNX1-205ENST00000559339 PCF11O94913 1555 aaKnown RBP6.9□□□□□ -1.31
SNX1-205ENST00000559339 KIF14Q15058 1648 aa6.9□□□□□ -1.31
SNX1-205ENST00000559339 MYT1LQ9UL68 1186 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms