RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 ARAP1Q96P48 1450 aa16.37■□□□□ 0.21
SPG11-214ENST00000558989 CUL7Q14999 1698 aa16.37■□□□□ 0.21
SPG11-214ENST00000558989 NUP160Q12769 1436 aa16.35■□□□□ 0.21
SPG11-214ENST00000558989 ERCC6L2Q5T890 1561 aa16.34■□□□□ 0.21
SPG11-214ENST00000558989 CARMIL1Q5VZK9 1371 aa16.31■□□□□ 0.2
SPG11-214ENST00000558989 CSRNP3Q8WYN3 585 aa16.28■□□□□ 0.2
SPG11-214ENST00000558989 SHROOM2Q13796 1616 aa16.27■□□□□ 0.2
SPG11-214ENST00000558989 RTN4Q9NQC3 1192 aaKnown RBP16.26■□□□□ 0.19
SPG11-214ENST00000558989 AMER1Q5JTC6 1135 aaPredicted RBP16.25■□□□□ 0.19
SPG11-214ENST00000558989 KCNA4P22459 653 aa16.24■□□□□ 0.19
SPG11-214ENST00000558989 JPH4Q96JJ6 628 aa16.24■□□□□ 0.19
SPG11-214ENST00000558989 PRG4Q92954 1404 aaPredicted RBP16.24■□□□□ 0.19
SPG11-214ENST00000558989 FAM9AQ8IZU1 332 aaPredicted RBP16.22■□□□□ 0.19
SPG11-214ENST00000558989 TTBK1Q5TCY1 1321 aaPredicted RBP16.21■□□□□ 0.19
SPG11-214ENST00000558989 RAPGEF2Q9Y4G8 1499 aa16.2■□□□□ 0.18
SPG11-214ENST00000558989 KIAA0586Q9BVV6 1533 aa16.19■□□□□ 0.18
SPG11-214ENST00000558989 TRHP20396 242 aaPredicted RBP16.17■□□□□ 0.18
SPG11-214ENST00000558989 IQGAP2Q13576 1575 aa16.15■□□□□ 0.18
SPG11-214ENST00000558989 CTTNBP2Q8WZ74 1663 aa16.13■□□□□ 0.17
SPG11-214ENST00000558989 PRXQ9BXM0 1461 aa16.08■□□□□ 0.17
SPG11-214ENST00000558989 CARMIL2Q6F5E8 1435 aa16.05■□□□□ 0.16
SPG11-214ENST00000558989 RANGAP1P46060 587 aaPredicted RBP16.04■□□□□ 0.16
SPG11-214ENST00000558989 EEA1Q15075 1411 aa16.02■□□□□ 0.16
SPG11-214ENST00000558989 ADCY10Q96PN6 1610 aa16.02■□□□□ 0.15
SPG11-214ENST00000558989 DISP1Q96F81 1524 aa16.02■□□□□ 0.15
SPG11-214ENST00000558989 PTPRGP23470 1445 aa16.01■□□□□ 0.15
SPG11-214ENST00000558989 TNIKQ9UKE5 1360 aa16■□□□□ 0.15
SPG11-214ENST00000558989 KIAA0556O60303 1618 aa16■□□□□ 0.15
SPG11-214ENST00000558989 UGGT2Q9NYU1 1516 aa16■□□□□ 0.15
SPG11-214ENST00000558989 NPM1P06748 294 aaKnown RBP eCLIP15.98■□□□□ 0.15
SPG11-214ENST00000558989 P3H3Q8IVL6 736 aa15.98■□□□□ 0.15
SPG11-214ENST00000558989 KIF21BO75037 1637 aa15.93■□□□□ 0.14
SPG11-214ENST00000558989 KIF13AQ9H1H9 1805 aa15.93■□□□□ 0.14
SPG11-214ENST00000558989 GOLGA3Q08378 1498 aa15.91■□□□□ 0.14
SPG11-214ENST00000558989 UBTFP17480 764 aaKnown RBP15.91■□□□□ 0.14
SPG11-214ENST00000558989 UACAQ9BZF9 1416 aa15.89■□□□□ 0.13
SPG11-214ENST00000558989 ARID3CA6NKF2 412 aa15.87■□□□□ 0.13
SPG11-214ENST00000558989 TSPOAP1O95153 1857 aa15.87■□□□□ 0.13
SPG11-214ENST00000558989 PLB1Q6P1J6 1458 aa15.87■□□□□ 0.13
SPG11-214ENST00000558989 ABCC2Q92887 1545 aa15.86■□□□□ 0.13
SPG11-214ENST00000558989 FAM69CQ0P6D2 419 aa15.86■□□□□ 0.13
SPG11-214ENST00000558989 NCBP3Q53F19 620 aaKnown RBP15.85■□□□□ 0.13
SPG11-214ENST00000558989 MAPKBP1O60336 1514 aa15.85■□□□□ 0.13
SPG11-214ENST00000558989 ZCCHC11Q5TAX3 1644 aaKnown RBP15.84■□□□□ 0.13
SPG11-214ENST00000558989 SAMD9Q5K651 1589 aa15.84■□□□□ 0.13
SPG11-214ENST00000558989 DIP2BQ9P265 1576 aa15.82■□□□□ 0.12
SPG11-214ENST00000558989 UHRF1BP1LA0JNW5 1464 aa15.82■□□□□ 0.12
SPG11-214ENST00000558989 FHOD3Q2V2M9 1422 aa15.81■□□□□ 0.12
SPG11-214ENST00000558989 ABCC10Q5T3U5 1492 aa15.8■□□□□ 0.12
SPG11-214ENST00000558989 ASXL2Q76L83 1435 aa15.8■□□□□ 0.12
SPG11-214ENST00000558989 ABCA8O94911 1581 aa15.8■□□□□ 0.12
SPG11-214ENST00000558989 KDM5BQ9UGL1 1544 aa15.78■□□□□ 0.12
SPG11-214ENST00000558989 SLC4A1APQ9BWU0 796 aaKnown RBP15.75■□□□□ 0.11
SPG11-214ENST00000558989 RAPGEF6Q8TEU7 1601 aa15.75■□□□□ 0.11
SPG11-214ENST00000558989 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.75■□□□□ 0.11
SPG11-214ENST00000558989 HNRNPUL2Q1KMD3 747 aaKnown RBP15.75■□□□□ 0.11
SPG11-214ENST00000558989 KCNH8Q96L42 1107 aa15.73■□□□□ 0.11
SPG11-214ENST00000558989 EFCAB5A4FU69 1503 aa15.72■□□□□ 0.11
SPG11-214ENST00000558989 ATP1B4Q9UN42 357 aaPredicted RBP15.71■□□□□ 0.11
SPG11-214ENST00000558989 EPRSP07814 1512 aaKnown RBP15.69■□□□□ 0.1
SPG11-214ENST00000558989 ARHGAP35Q9NRY4 1499 aa15.69■□□□□ 0.1
SPG11-214ENST00000558989 ATP10BO94823 1461 aa15.68■□□□□ 0.1
SPG11-214ENST00000558989 WDR7Q9Y4E6 1490 aa15.68■□□□□ 0.1
SPG11-214ENST00000558989 PPRC1Q5VV67 1664 aaKnown RBP15.67■□□□□ 0.1
SPG11-214ENST00000558989 GLI2P10070 1586 aa15.65■□□□□ 0.1
SPG11-214ENST00000558989 NUP153P49790 1475 aaKnown RBP15.65■□□□□ 0.1
SPG11-214ENST00000558989 MAP3K4Q9Y6R4 1608 aa15.64■□□□□ 0.09
SPG11-214ENST00000558989 KDM6BO15054 1643 aa15.63■□□□□ 0.09
SPG11-214ENST00000558989 CDK13Q14004 1512 aaKnown RBP15.61■□□□□ 0.09
SPG11-214ENST00000558989 LOC105371045A0A1W2PR82 267 aa15.61■□□□□ 0.09
SPG11-214ENST00000558989 CFAP43Q8NDM7 1665 aa15.59■□□□□ 0.09
SPG11-214ENST00000558989 FMN1Q68DA7 1419 aa15.59■□□□□ 0.09
SPG11-214ENST00000558989 LRRIQ1Q96JM4 1722 aa15.58■□□□□ 0.09
SPG11-214ENST00000558989 HECW1Q76N89 1606 aa15.58■□□□□ 0.08
SPG11-214ENST00000558989 CLIP1P30622 1438 aa15.58■□□□□ 0.08
SPG11-214ENST00000558989 CD109Q6YHK3 1445 aa15.57■□□□□ 0.08
SPG11-214ENST00000558989 DAXXQ9UER7 740 aaPredicted RBP15.57■□□□□ 0.08
SPG11-214ENST00000558989 PLEKHD1A6NEE1 506 aa15.56■□□□□ 0.08
SPG11-214ENST00000558989 PCF11O94913 1555 aaKnown RBP15.55■□□□□ 0.08
SPG11-214ENST00000558989 TEX14Q8IWB6 1497 aa15.54■□□□□ 0.08
SPG11-214ENST00000558989 ABCA9Q8IUA7 1624 aa15.52■□□□□ 0.08
SPG11-214ENST00000558989 SENP3Q9H4L4 574 aaPredicted RBP15.51■□□□□ 0.07
SPG11-214ENST00000558989 COL17A1Q9UMD9 1497 aaPredicted RBP15.5■□□□□ 0.07
SPG11-214ENST00000558989 CEP162Q5TB80 1403 aa15.5■□□□□ 0.07
SPG11-214ENST00000558989 MAGI3Q5TCQ9 1506 aa15.48■□□□□ 0.07
SPG11-214ENST00000558989 TTC37Q6PGP7 1564 aa15.48■□□□□ 0.07
SPG11-214ENST00000558989 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.47■□□□□ 0.07
SPG11-214ENST00000558989 CASKIN1Q8WXD9 1431 aa15.46■□□□□ 0.07
SPG11-214ENST00000558989 KIF14Q15058 1648 aa15.46■□□□□ 0.07
SPG11-214ENST00000558989 CDK11AQ9UQ88 783 aaPredicted RBP15.44■□□□□ 0.06
SPG11-214ENST00000558989 FYCO1Q9BQS8 1478 aa15.42■□□□□ 0.06
SPG11-214ENST00000558989 MYO5CQ9NQX4 1742 aa15.41■□□□□ 0.06
SPG11-214ENST00000558989 CCDC18Q5T9S5 1454 aa15.41■□□□□ 0.06
SPG11-214ENST00000558989 TROQ12816 1431 aaPredicted RBP15.4■□□□□ 0.06
SPG11-214ENST00000558989 RAPGEF3O95398 923 aa15.39■□□□□ 0.05
SPG11-214ENST00000558989 FANCAO15360 1455 aa15.38■□□□□ 0.05
SPG11-214ENST00000558989 NEO1Q92859 1461 aa15.36■□□□□ 0.05
SPG11-214ENST00000558989 AKNAQ7Z591 1439 aa15.35■□□□□ 0.05
SPG11-214ENST00000558989 ARAP3Q8WWN8 1544 aa15.35■□□□□ 0.05
SPG11-214ENST00000558989 CFAP74Q9C0B2 1584 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms