RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 ADAMTS12P58397 1594 aa14.31□□□□□ -0.12
TRAF3-205ENST00000558700 CSRNP3Q8WYN3 585 aa14.31□□□□□ -0.12
TRAF3-205ENST00000558700 GRIN2AQ12879 1464 aa14.25□□□□□ -0.13
TRAF3-205ENST00000558700 ERICH3Q5RHP9 1530 aa14.25□□□□□ -0.13
TRAF3-205ENST00000558700 CYB5RLQ6IPT4 315 aa14.24□□□□□ -0.13
TRAF3-205ENST00000558700 FHAD1B1AJZ9 1412 aa14.21□□□□□ -0.13
TRAF3-205ENST00000558700 CEP170Q5SW79 1584 aa14.21□□□□□ -0.14
TRAF3-205ENST00000558700 NUP160Q12769 1436 aa14.19□□□□□ -0.14
TRAF3-205ENST00000558700 SHROOM2Q13796 1616 aa14.16□□□□□ -0.14
TRAF3-205ENST00000558700 RUSC2Q8N2Y8 1516 aa14.12□□□□□ -0.15
TRAF3-205ENST00000558700 CUL7Q14999 1698 aa14.11□□□□□ -0.15
TRAF3-205ENST00000558700 ERCC6L2Q5T890 1561 aa14.11□□□□□ -0.15
TRAF3-205ENST00000558700 NPM3O75607 178 aaKnown RBP14.09□□□□□ -0.15
TRAF3-205ENST00000558700 KIF27Q86VH2 1401 aa14.07□□□□□ -0.16
TRAF3-205ENST00000558700 TRHP20396 242 aaPredicted RBP14.07□□□□□ -0.16
TRAF3-205ENST00000558700 PRG4Q92954 1404 aaPredicted RBP14.01□□□□□ -0.17
TRAF3-205ENST00000558700 KIAA0586Q9BVV6 1533 aa13.98□□□□□ -0.17
TRAF3-205ENST00000558700 IGF1RP08069 1367 aa13.97□□□□□ -0.17
TRAF3-205ENST00000558700 SCAF1Q9H7N4 1312 aaKnown RBP13.97□□□□□ -0.17
TRAF3-205ENST00000558700 CNKSR2Q8WXI2 1034 aa13.94□□□□□ -0.18
TRAF3-205ENST00000558700 JPH4Q96JJ6 628 aa13.94□□□□□ -0.18
TRAF3-205ENST00000558700 CARMIL1Q5VZK9 1371 aa13.92□□□□□ -0.18
TRAF3-205ENST00000558700 KIF13AQ9H1H9 1805 aa13.91□□□□□ -0.18
TRAF3-205ENST00000558700 IQGAP2Q13576 1575 aa13.91□□□□□ -0.18
TRAF3-205ENST00000558700 ADCY10Q96PN6 1610 aa13.9□□□□□ -0.18
TRAF3-205ENST00000558700 MAPKBP1O60336 1514 aa13.89□□□□□ -0.19
TRAF3-205ENST00000558700 RAPGEF2Q9Y4G8 1499 aa13.85□□□□□ -0.19
TRAF3-205ENST00000558700 CARMIL2Q6F5E8 1435 aa13.84□□□□□ -0.19
TRAF3-205ENST00000558700 CTTNBP2Q8WZ74 1663 aa13.84□□□□□ -0.19
TRAF3-205ENST00000558700 DIP2BQ9P265 1576 aa13.83□□□□□ -0.19
TRAF3-205ENST00000558700 ABCC10Q5T3U5 1492 aa13.81□□□□□ -0.2
TRAF3-205ENST00000558700 NPM1P06748 294 aaKnown RBP eCLIP13.8□□□□□ -0.2
TRAF3-205ENST00000558700 TNIKQ9UKE5 1360 aa13.8□□□□□ -0.2
TRAF3-205ENST00000558700 PTPRGP23470 1445 aa13.8□□□□□ -0.2
TRAF3-205ENST00000558700 UGGT2Q9NYU1 1516 aa13.8□□□□□ -0.2
TRAF3-205ENST00000558700 KIAA0556O60303 1618 aa13.79□□□□□ -0.2
TRAF3-205ENST00000558700 ABCC2Q92887 1545 aa13.77□□□□□ -0.21
TRAF3-205ENST00000558700 DISP1Q96F81 1524 aa13.77□□□□□ -0.21
TRAF3-205ENST00000558700 UHRF1BP1LA0JNW5 1464 aa13.75□□□□□ -0.21
TRAF3-205ENST00000558700 ZBTB22O15209 634 aa13.72□□□□□ -0.21
TRAF3-205ENST00000558700 FAM69CQ0P6D2 419 aa13.72□□□□□ -0.21
TRAF3-205ENST00000558700 UACAQ9BZF9 1416 aa13.72□□□□□ -0.21
TRAF3-205ENST00000558700 PRXQ9BXM0 1461 aa13.71□□□□□ -0.21
TRAF3-205ENST00000558700 TTBK1Q5TCY1 1321 aaPredicted RBP13.7□□□□□ -0.22
TRAF3-205ENST00000558700 TSPOAP1O95153 1857 aa13.7□□□□□ -0.22
TRAF3-205ENST00000558700 GOLGA3Q08378 1498 aa13.7□□□□□ -0.22
TRAF3-205ENST00000558700 KDM6BO15054 1643 aa13.7□□□□□ -0.22
TRAF3-205ENST00000558700 PLB1Q6P1J6 1458 aa13.69□□□□□ -0.22
TRAF3-205ENST00000558700 ZCCHC11Q5TAX3 1644 aaKnown RBP13.69□□□□□ -0.22
TRAF3-205ENST00000558700 KDM5BQ9UGL1 1544 aa13.69□□□□□ -0.22
TRAF3-205ENST00000558700 GLI2P10070 1586 aa13.68□□□□□ -0.22
TRAF3-205ENST00000558700 ASXL2Q76L83 1435 aa13.68□□□□□ -0.22
TRAF3-205ENST00000558700 MSH5O43196 834 aa13.68□□□□□ -0.22
TRAF3-205ENST00000558700 PPRC1Q5VV67 1664 aaKnown RBP13.64□□□□□ -0.23
TRAF3-205ENST00000558700 EEA1Q15075 1411 aa13.64□□□□□ -0.23
TRAF3-205ENST00000558700 MAP3K4Q9Y6R4 1608 aa13.63□□□□□ -0.23
TRAF3-205ENST00000558700 ABCA8O94911 1581 aa13.62□□□□□ -0.23
TRAF3-205ENST00000558700 FOXD4L1Q9NU39 408 aa13.62□□□□□ -0.23
TRAF3-205ENST00000558700 EPRSP07814 1512 aaKnown RBP13.6□□□□□ -0.23
TRAF3-205ENST00000558700 WDR7Q9Y4E6 1490 aa13.6□□□□□ -0.23
TRAF3-205ENST00000558700 SAMD9Q5K651 1589 aa13.59□□□□□ -0.23
TRAF3-205ENST00000558700 TEX14Q8IWB6 1497 aa13.58□□□□□ -0.24
TRAF3-205ENST00000558700 CFAP43Q8NDM7 1665 aa13.56□□□□□ -0.24
TRAF3-205ENST00000558700 KIF21BO75037 1637 aa13.55□□□□□ -0.24
TRAF3-205ENST00000558700 RAPGEF6Q8TEU7 1601 aa13.52□□□□□ -0.25
TRAF3-205ENST00000558700 FAM9AQ8IZU1 332 aaPredicted RBP13.51□□□□□ -0.25
TRAF3-205ENST00000558700 EFCAB5A4FU69 1503 aa13.49□□□□□ -0.25
TRAF3-205ENST00000558700 MAGI3Q5TCQ9 1506 aa13.48□□□□□ -0.25
TRAF3-205ENST00000558700 RNF216Q9NWF9 866 aaPredicted RBP13.47□□□□□ -0.25
TRAF3-205ENST00000558700 CD109Q6YHK3 1445 aa13.46□□□□□ -0.26
TRAF3-205ENST00000558700 ATP10BO94823 1461 aa13.45□□□□□ -0.26
TRAF3-205ENST00000558700 ABCA9Q8IUA7 1624 aa13.45□□□□□ -0.26
TRAF3-205ENST00000558700 MAPK8IP2Q13387 824 aaPredicted RBP13.44□□□□□ -0.26
TRAF3-205ENST00000558700 P3H3Q8IVL6 736 aa13.44□□□□□ -0.26
TRAF3-205ENST00000558700 FHOD3Q2V2M9 1422 aa13.44□□□□□ -0.26
TRAF3-205ENST00000558700 COL17A1Q9UMD9 1497 aaPredicted RBP13.43□□□□□ -0.26
TRAF3-205ENST00000558700 NUP153P49790 1475 aaKnown RBP13.42□□□□□ -0.26
TRAF3-205ENST00000558700 KCNH8Q96L42 1107 aa13.4□□□□□ -0.26
TRAF3-205ENST00000558700 ADGRL1O94910 1474 aa13.4□□□□□ -0.26
TRAF3-205ENST00000558700 ARID3CA6NKF2 412 aa13.39□□□□□ -0.27
TRAF3-205ENST00000558700 ARAP3Q8WWN8 1544 aa13.37□□□□□ -0.27
TRAF3-205ENST00000558700 RANGAP1P46060 587 aaPredicted RBP13.36□□□□□ -0.27
TRAF3-205ENST00000558700 CFAP74Q9C0B2 1584 aa13.36□□□□□ -0.27
TRAF3-205ENST00000558700 HECW1Q76N89 1606 aa13.35□□□□□ -0.27
TRAF3-205ENST00000558700 KDM4FA0A1W2PPD8 638 aa13.35□□□□□ -0.27
TRAF3-205ENST00000558700 NEO1Q92859 1461 aa13.35□□□□□ -0.27
TRAF3-205ENST00000558700 PHLDB1Q86UU1 1377 aa13.34□□□□□ -0.27
TRAF3-205ENST00000558700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.34□□□□□ -0.27
TRAF3-205ENST00000558700 HNRNPUL2Q1KMD3 747 aaKnown RBP13.34□□□□□ -0.27
TRAF3-205ENST00000558700 FMN1Q68DA7 1419 aa13.32□□□□□ -0.28
TRAF3-205ENST00000558700 CDK13Q14004 1512 aaKnown RBP13.31□□□□□ -0.28
TRAF3-205ENST00000558700 FRMPD1Q5SYB0 1578 aa13.31□□□□□ -0.28
TRAF3-205ENST00000558700 TTC37Q6PGP7 1564 aa13.31□□□□□ -0.28
TRAF3-205ENST00000558700 ARHGAP35Q9NRY4 1499 aa13.3□□□□□ -0.28
TRAF3-205ENST00000558700 UBTFP17480 764 aaKnown RBP13.3□□□□□ -0.28
TRAF3-205ENST00000558700 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.29□□□□□ -0.28
TRAF3-205ENST00000558700 ARHGEF40Q8TER5 1519 aa13.28□□□□□ -0.28
TRAF3-205ENST00000558700 PLEKHD1A6NEE1 506 aa13.27□□□□□ -0.29
TRAF3-205ENST00000558700 KIF14Q15058 1648 aa13.26□□□□□ -0.29
TRAF3-205ENST00000558700 RICTORQ6R327 1708 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms