RNA–Protein interactions for RNA: ENST00000558662.5

HMBOX1-212, Transcript of homeobox containing 1, humanhuman

TSL 5 BASIC

Gene HMBOX1, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMBOX1-212ENST00000558662 MAP3K1Q13233 1512 aa22.5■■□□□ 1.19
HMBOX1-212ENST00000558662 DDX10Q13206 875 aaKnown RBP22.5■■□□□ 1.19
HMBOX1-212ENST00000558662 WDR97A6NE52 1622 aa22.49■■□□□ 1.19
HMBOX1-212ENST00000558662 PPP4R2Q9NY27 417 aa22.49■■□□□ 1.19
HMBOX1-212ENST00000558662 RAB3GAP2Q9H2M9 1393 aa22.45■■□□□ 1.18
HMBOX1-212ENST00000558662 SETD5Q9C0A6 1442 aa22.43■■□□□ 1.18
HMBOX1-212ENST00000558662 PRXQ9BXM0 1461 aa22.42■■□□□ 1.18
HMBOX1-212ENST00000558662 NOP58Q9Y2X3 529 aaKnown RBP22.42■■□□□ 1.18
HMBOX1-212ENST00000558662 TOP2BQ02880 1626 aa22.39■■□□□ 1.18
HMBOX1-212ENST00000558662 TRIM52Q96A61 297 aa22.39■■□□□ 1.17
HMBOX1-212ENST00000558662 NCAPD3P42695 1498 aa22.37■■□□□ 1.17
HMBOX1-212ENST00000558662 HMGXB3Q12766 1538 aa22.36■■□□□ 1.17
HMBOX1-212ENST00000558662 BIVM-ERCC5R4GMW8 1640 aa22.35■■□□□ 1.17
HMBOX1-212ENST00000558662 KANK4Q5T7N3 995 aaPredicted RBP22.34■■□□□ 1.17
HMBOX1-212ENST00000558662 RTL5Q5HYW3 569 aaPredicted RBP22.27■■□□□ 1.16
HMBOX1-212ENST00000558662 ANO8Q9HCE9 1232 aaPredicted RBP22.24■■□□□ 1.15
HMBOX1-212ENST00000558662 TIAM1Q13009 1591 aa22.22■■□□□ 1.15
HMBOX1-212ENST00000558662 CC2D2AQ9P2K1 1620 aa22.22■■□□□ 1.15
HMBOX1-212ENST00000558662 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.22■■□□□ 1.15
HMBOX1-212ENST00000558662 HNRNPUQ00839 825 aaKnown RBP eCLIP22.21■■□□□ 1.15
HMBOX1-212ENST00000558662 UBE2Q2Q8WVN8 375 aa22.2■■□□□ 1.14
HMBOX1-212ENST00000558662 FHAD1B1AJZ9 1412 aa22.19■■□□□ 1.14
HMBOX1-212ENST00000558662 USP35Q9P2H5 1018 aa22.19■■□□□ 1.14
HMBOX1-212ENST00000558662 ANP32AP39687 249 aaKnown RBP22.18■■□□□ 1.14
HMBOX1-212ENST00000558662 IPO9Q96P70 1041 aaKnown RBP22.17■■□□□ 1.14
HMBOX1-212ENST00000558662 ARHGAP35Q9NRY4 1499 aa22.15■■□□□ 1.14
HMBOX1-212ENST00000558662 C11orf95C9JLR9 678 aaPredicted RBP22.12■■□□□ 1.13
HMBOX1-212ENST00000558662 WASHC2AQ641Q2 1341 aa22.12■■□□□ 1.13
HMBOX1-212ENST00000558662 ZBED9Q6R2W3 1325 aa22.1■■□□□ 1.13
HMBOX1-212ENST00000558662 LRRC9Q6ZRR7 1453 aa22.09■■□□□ 1.13
HMBOX1-212ENST00000558662 CFAP43Q8NDM7 1665 aa22.09■■□□□ 1.13
HMBOX1-212ENST00000558662 ZBTB47Q9UFB7 747 aaPredicted RBP22.09■■□□□ 1.13
HMBOX1-212ENST00000558662 TONSLQ96HA7 1378 aa22.08■■□□□ 1.13
HMBOX1-212ENST00000558662 NBR1Q14596 966 aa22.07■■□□□ 1.12
HMBOX1-212ENST00000558662 SIN3AQ96ST3 1273 aa22.07■■□□□ 1.12
HMBOX1-212ENST00000558662 SALL2Q9Y467 1007 aaPredicted RBP22.07■■□□□ 1.12
HMBOX1-212ENST00000558662 NCOA2Q15596 1464 aa22.07■■□□□ 1.12
HMBOX1-212ENST00000558662 KIF27Q86VH2 1401 aa22.04■■□□□ 1.12
HMBOX1-212ENST00000558662 PAK3O75914 559 aaPredicted RBP22.04■■□□□ 1.12
HMBOX1-212ENST00000558662 IRX6P78412 446 aaPredicted RBP22.01■■□□□ 1.11
HMBOX1-212ENST00000558662 WASHC2CQ9Y4E1 1318 aa21.99■■□□□ 1.11
HMBOX1-212ENST00000558662 RANGAP1P46060 587 aaPredicted RBP21.98■■□□□ 1.11
HMBOX1-212ENST00000558662 CNTLNQ9NXG0 1405 aa21.97■■□□□ 1.11
HMBOX1-212ENST00000558662 CCDC136Q96JN2 1154 aa21.97■■□□□ 1.11
HMBOX1-212ENST00000558662 B4GALNT3Q6L9W6 998 aa21.97■■□□□ 1.11
HMBOX1-212ENST00000558662 SMG6Q86US8 1419 aaKnown RBP21.96■■□□□ 1.11
HMBOX1-212ENST00000558662 UACAQ9BZF9 1416 aa21.96■■□□□ 1.11
HMBOX1-212ENST00000558662 RNF123Q5XPI4 1314 aa21.95■■□□□ 1.1
HMBOX1-212ENST00000558662 PPM1GO15355 546 aaPredicted RBP21.94■■□□□ 1.1
HMBOX1-212ENST00000558662 PHLDB1Q86UU1 1377 aa21.93■■□□□ 1.1
HMBOX1-212ENST00000558662 IL27Q8NEV9 243 aa21.88■■□□□ 1.09
HMBOX1-212ENST00000558662 POLR1AO95602 1720 aaPredicted RBP21.88■■□□□ 1.09
HMBOX1-212ENST00000558662 ABCA5Q8WWZ7 1642 aa21.88■■□□□ 1.09
HMBOX1-212ENST00000558662 KDM5BQ9UGL1 1544 aa21.88■■□□□ 1.09
HMBOX1-212ENST00000558662 HFM1A2PYH4 1435 aa21.86■■□□□ 1.09
HMBOX1-212ENST00000558662 CCDC18Q5T9S5 1454 aa21.85■■□□□ 1.09
HMBOX1-212ENST00000558662 HIRIP3Q9BW71 556 aaPredicted RBP21.84■■□□□ 1.09
HMBOX1-212ENST00000558662 CFTRP13569 1480 aa21.84■■□□□ 1.09
HMBOX1-212ENST00000558662 FAM50AQ14320 339 aaKnown RBP21.82■■□□□ 1.08
HMBOX1-212ENST00000558662 AQRO60306 1485 aaKnown RBP eCLIP21.81■■□□□ 1.082e-6■■■■□ 20.6
HMBOX1-212ENST00000558662 PRKRIP1Q9H875 184 aaPredicted RBP21.81■■□□□ 1.08
HMBOX1-212ENST00000558662 PTPN23Q9H3S7 1636 aa21.81■■□□□ 1.08
HMBOX1-212ENST00000558662 TCERG1O14776 1098 aaKnown RBP21.8■■□□□ 1.08
HMBOX1-212ENST00000558662 FYCO1Q9BQS8 1478 aa21.79■■□□□ 1.08
HMBOX1-212ENST00000558662 PRDM2Q13029 1718 aa21.79■■□□□ 1.08
HMBOX1-212ENST00000558662 NCOA1Q15788 1441 aa21.78■■□□□ 1.08
HMBOX1-212ENST00000558662 MS4A1P11836 297 aa21.78■■□□□ 1.08
HMBOX1-212ENST00000558662 EIF4G2P78344 907 aaKnown RBP eCLIP21.77■■□□□ 1.081e-6■■■□□ 15.8
HMBOX1-212ENST00000558662 NUDCQ9Y266 331 aa21.77■■□□□ 1.08
HMBOX1-212ENST00000558662 CUX1P39880 1505 aa21.77■■□□□ 1.08
HMBOX1-212ENST00000558662 NEFMP07197 916 aa21.75■■□□□ 1.07
HMBOX1-212ENST00000558662 RSPH6AQ9H0K4 717 aa21.75■■□□□ 1.07
HMBOX1-212ENST00000558662 MRS2Q9HD23 443 aa21.74■■□□□ 1.07
HMBOX1-212ENST00000558662 PCF11O94913 1555 aaKnown RBP21.74■■□□□ 1.07
HMBOX1-212ENST00000558662 DDRGK1Q96HY6 314 aa21.74■■□□□ 1.07
HMBOX1-212ENST00000558662 HSPA5P11021 654 aaKnown RBP21.73■■□□□ 1.07
HMBOX1-212ENST00000558662 CADPSQ9ULU8 1353 aa21.72■■□□□ 1.07
HMBOX1-212ENST00000558662 EFCAB5A4FU69 1503 aa21.72■■□□□ 1.07
HMBOX1-212ENST00000558662 CCDC7Q96M83 1385 aa21.71■■□□□ 1.07
HMBOX1-212ENST00000558662 FGD6Q6ZV73 1430 aa21.71■■□□□ 1.07
HMBOX1-212ENST00000558662 HECW1Q76N89 1606 aa21.71■■□□□ 1.07
HMBOX1-212ENST00000558662 FMN1Q68DA7 1419 aa21.7■■□□□ 1.06
HMBOX1-212ENST00000558662 CASKIN1Q8WXD9 1431 aa21.67■■□□□ 1.06
HMBOX1-212ENST00000558662 GSE1Q14687 1217 aa21.67■■□□□ 1.06
HMBOX1-212ENST00000558662 FAM9BQ8IZU0 186 aa21.66■■□□□ 1.06
HMBOX1-212ENST00000558662 NAIPQ13075 1403 aa21.64■■□□□ 1.05
HMBOX1-212ENST00000558662 AKNAQ7Z591 1439 aa21.63■■□□□ 1.05
HMBOX1-212ENST00000558662 RTN4Q9NQC3 1192 aaKnown RBP21.63■■□□□ 1.05
HMBOX1-212ENST00000558662 FGD5Q6ZNL6 1462 aa21.63■■□□□ 1.05
HMBOX1-212ENST00000558662 GCC2Q8IWJ2 1684 aa21.62■■□□□ 1.05
HMBOX1-212ENST00000558662 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.61■■□□□ 1.05
HMBOX1-212ENST00000558662 CCDC184Q52MB2 194 aa21.61■■□□□ 1.05
HMBOX1-212ENST00000558662 FAM43AQ8N2R8 423 aa21.61■■□□□ 1.05
HMBOX1-212ENST00000558662 DNAJC5BQ9UF47 199 aa21.61■■□□□ 1.05
HMBOX1-212ENST00000558662 BACH2Q9BYV9 841 aa21.6■■□□□ 1.05
HMBOX1-212ENST00000558662 LAMC3Q9Y6N6 1575 aa21.6■■□□□ 1.05
HMBOX1-212ENST00000558662 IGF1RP08069 1367 aa21.59■■□□□ 1.05
HMBOX1-212ENST00000558662 GLIPR1L2Q4G1C9 344 aa21.59■■□□□ 1.05
HMBOX1-212ENST00000558662 PDE4AP27815 886 aa21.57■■□□□ 1.04
HMBOX1-212ENST00000558662 ARID4BQ4LE39 1312 aaPredicted RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms