RNA–Protein interactions for RNA: ENST00000558411.1

PCAT29-201, prostate cancer associated transcript 29, humanhuman

TSL 2 BASIC

Gene PCAT29, Length 2,121 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCAT29-201ENST00000558411 KANK4Q5T7N3 995 aaPredicted RBP15.68■□□□□ 0.1
PCAT29-201ENST00000558411 RAB3GAP2Q9H2M9 1393 aa15.68■□□□□ 0.1
PCAT29-201ENST00000558411 PEG3Q9GZU2 1588 aa15.67■□□□□ 0.1
PCAT29-201ENST00000558411 TRIM52Q96A61 297 aa15.67■□□□□ 0.1
PCAT29-201ENST00000558411 PRXQ9BXM0 1461 aa15.65■□□□□ 0.1
PCAT29-201ENST00000558411 TOP2BQ02880 1626 aa15.63■□□□□ 0.09
PCAT29-201ENST00000558411 SETD5Q9C0A6 1442 aa15.62■□□□□ 0.09
PCAT29-201ENST00000558411 MAP3K1Q13233 1512 aa15.6■□□□□ 0.09
PCAT29-201ENST00000558411 CC2D2AQ9P2K1 1620 aa15.59■□□□□ 0.09
PCAT29-201ENST00000558411 BIVM-ERCC5R4GMW8 1640 aa15.59■□□□□ 0.09
PCAT29-201ENST00000558411 PPP4R2Q9NY27 417 aa15.58■□□□□ 0.08
PCAT29-201ENST00000558411 ATAD2BQ9ULI0 1458 aa15.57■□□□□ 0.08
PCAT29-201ENST00000558411 RANGAP1P46060 587 aaPredicted RBP15.55■□□□□ 0.08
PCAT29-201ENST00000558411 NOP58Q9Y2X3 529 aaKnown RBP15.53■□□□□ 0.08
PCAT29-201ENST00000558411 DNAJC5BQ9UF47 199 aa15.51■□□□□ 0.07
PCAT29-201ENST00000558411 TIAM1Q13009 1591 aa15.5■□□□□ 0.07
PCAT29-201ENST00000558411 ARHGAP35Q9NRY4 1499 aa15.5■□□□□ 0.07
PCAT29-201ENST00000558411 SIN3AQ96ST3 1273 aa15.49■□□□□ 0.07
PCAT29-201ENST00000558411 HNRNPUQ00839 825 aaKnown RBP eCLIP15.48■□□□□ 0.07
PCAT29-201ENST00000558411 ANO8Q9HCE9 1232 aaPredicted RBP15.45■□□□□ 0.06
PCAT29-201ENST00000558411 NCAPD3P42695 1498 aa15.44■□□□□ 0.06
PCAT29-201ENST00000558411 IRX6P78412 446 aaPredicted RBP15.44■□□□□ 0.06
PCAT29-201ENST00000558411 LRRC9Q6ZRR7 1453 aa15.42■□□□□ 0.06
PCAT29-201ENST00000558411 FHAD1B1AJZ9 1412 aa15.41■□□□□ 0.06
PCAT29-201ENST00000558411 HMGXB3Q12766 1538 aa15.4■□□□□ 0.06
PCAT29-201ENST00000558411 CFAP43Q8NDM7 1665 aa15.39■□□□□ 0.05
PCAT29-201ENST00000558411 HIRIP3Q9BW71 556 aaPredicted RBP15.39■□□□□ 0.05
PCAT29-201ENST00000558411 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.39■□□□□ 0.05
PCAT29-201ENST00000558411 KIF27Q86VH2 1401 aa15.39■□□□□ 0.05
PCAT29-201ENST00000558411 NBR1Q14596 966 aa15.38■□□□□ 0.05
PCAT29-201ENST00000558411 RTL5Q5HYW3 569 aaPredicted RBP15.38■□□□□ 0.05
PCAT29-201ENST00000558411 TONSLQ96HA7 1378 aa15.38■□□□□ 0.05
PCAT29-201ENST00000558411 PAK3O75914 559 aaPredicted RBP15.37■□□□□ 0.05
PCAT29-201ENST00000558411 PHLDB1Q86UU1 1377 aa15.37■□□□□ 0.05
PCAT29-201ENST00000558411 IPO9Q96P70 1041 aaKnown RBP15.35■□□□□ 0.05
PCAT29-201ENST00000558411 ANP32AP39687 249 aaKnown RBP15.34■□□□□ 0.05
PCAT29-201ENST00000558411 SALL2Q9Y467 1007 aaPredicted RBP15.34■□□□□ 0.05
PCAT29-201ENST00000558411 NCOA2Q15596 1464 aa15.34■□□□□ 0.05
PCAT29-201ENST00000558411 B4GALNT3Q6L9W6 998 aa15.34■□□□□ 0.05
PCAT29-201ENST00000558411 ZBED9Q6R2W3 1325 aa15.33■□□□□ 0.05
PCAT29-201ENST00000558411 WASHC2AQ641Q2 1341 aa15.3■□□□□ 0.04
PCAT29-201ENST00000558411 ZBTB47Q9UFB7 747 aaPredicted RBP15.29■□□□□ 0.04
PCAT29-201ENST00000558411 KDM5BQ9UGL1 1544 aa15.29■□□□□ 0.04
PCAT29-201ENST00000558411 CNTLNQ9NXG0 1405 aa15.28■□□□□ 0.04
PCAT29-201ENST00000558411 FAM50AQ14320 339 aaKnown RBP15.28■□□□□ 0.04
PCAT29-201ENST00000558411 UACAQ9BZF9 1416 aa15.28■□□□□ 0.04
PCAT29-201ENST00000558411 CUX1P39880 1505 aa15.27■□□□□ 0.04
PCAT29-201ENST00000558411 UBE2Q2Q8WVN8 375 aa15.26■□□□□ 0.03
PCAT29-201ENST00000558411 USP35Q9P2H5 1018 aa15.26■□□□□ 0.03
PCAT29-201ENST00000558411 CCDC18Q5T9S5 1454 aa15.25■□□□□ 0.03
PCAT29-201ENST00000558411 C11orf95C9JLR9 678 aaPredicted RBP15.25■□□□□ 0.03
PCAT29-201ENST00000558411 SMG6Q86US8 1419 aaKnown RBP15.24■□□□□ 0.03
PCAT29-201ENST00000558411 IL27Q8NEV9 243 aa15.23■□□□□ 0.03
PCAT29-201ENST00000558411 RNF123Q5XPI4 1314 aa15.22■□□□□ 0.03
PCAT29-201ENST00000558411 HFM1A2PYH4 1435 aa15.22■□□□□ 0.03
PCAT29-201ENST00000558411 PCF11O94913 1555 aaKnown RBP15.22■□□□□ 0.03
PCAT29-201ENST00000558411 PTPN23Q9H3S7 1636 aa15.21■□□□□ 0.03
PCAT29-201ENST00000558411 WASHC2CQ9Y4E1 1318 aa15.2■□□□□ 0.02
PCAT29-201ENST00000558411 CCDC136Q96JN2 1154 aa15.2■□□□□ 0.02
PCAT29-201ENST00000558411 PRKRIP1Q9H875 184 aaPredicted RBP15.19■□□□□ 0.02
PCAT29-201ENST00000558411 FYCO1Q9BQS8 1478 aa15.18■□□□□ 0.02
PCAT29-201ENST00000558411 HSPA5P11021 654 aaKnown RBP15.17■□□□□ 0.02
PCAT29-201ENST00000558411 ABCA5Q8WWZ7 1642 aa15.17■□□□□ 0.02
PCAT29-201ENST00000558411 CCDC184Q52MB2 194 aa15.17■□□□□ 0.02
PCAT29-201ENST00000558411 POLR1AO95602 1720 aaPredicted RBP15.17■□□□□ 0.02
PCAT29-201ENST00000558411 NCOA1Q15788 1441 aa15.16■□□□□ 0.02
PCAT29-201ENST00000558411 AQRO60306 1485 aaKnown RBP eCLIP15.15■□□□□ 0.02
PCAT29-201ENST00000558411 MRS2Q9HD23 443 aa15.15■□□□□ 0.02
PCAT29-201ENST00000558411 FGD6Q6ZV73 1430 aa15.15■□□□□ 0.02
PCAT29-201ENST00000558411 EIF4G2P78344 907 aaKnown RBP eCLIP15.14■□□□□ 0.01
PCAT29-201ENST00000558411 FAM9BQ8IZU0 186 aa15.14■□□□□ 0.01
PCAT29-201ENST00000558411 CCDC7Q96M83 1385 aa15.13■□□□□ 0.01
PCAT29-201ENST00000558411 PPM1GO15355 546 aaPredicted RBP15.13■□□□□ 0.01
PCAT29-201ENST00000558411 NUDCQ9Y266 331 aa15.13■□□□□ 0.01
PCAT29-201ENST00000558411 IGF1RP08069 1367 aa15.12■□□□□ 0.01
PCAT29-201ENST00000558411 AKNAQ7Z591 1439 aa15.11■□□□□ 0.01
PCAT29-201ENST00000558411 NESP48681 1621 aa15.11■□□□□ 0.01
PCAT29-201ENST00000558411 HECW1Q76N89 1606 aa15.11■□□□□ 0.01
PCAT29-201ENST00000558411 NAIPQ13075 1403 aa15.11■□□□□ 0.01
PCAT29-201ENST00000558411 CASKIN1Q8WXD9 1431 aa15.11■□□□□ 0.01
PCAT29-201ENST00000558411 FMN1Q68DA7 1419 aa15.1■□□□□ 0.01
PCAT29-201ENST00000558411 EFCAB5A4FU69 1503 aa15.1■□□□□ 0.01
PCAT29-201ENST00000558411 RTN4Q9NQC3 1192 aaKnown RBP15.1■□□□□ 0.01
PCAT29-201ENST00000558411 NEFMP07197 916 aa15.09■□□□□ 0.01
PCAT29-201ENST00000558411 FGD5Q6ZNL6 1462 aa15.09■□□□□ 0.01
PCAT29-201ENST00000558411 TCERG1O14776 1098 aaKnown RBP15.07■□□□□ 0
PCAT29-201ENST00000558411 CARMIL1Q5VZK9 1371 aa15.07■□□□□ 0
PCAT29-201ENST00000558411 PTPRKQ15262 1439 aa15.06■□□□□ 0
PCAT29-201ENST00000558411 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.06■□□□□ 0
PCAT29-201ENST00000558411 PRDM2Q13029 1718 aa15.05■□□□□ 0
PCAT29-201ENST00000558411 CFTRP13569 1480 aa15.05■□□□□ -0
PCAT29-201ENST00000558411 GCC2Q8IWJ2 1684 aa15.05■□□□□ -0
PCAT29-201ENST00000558411 MS4A1P11836 297 aa15.04■□□□□ -0
PCAT29-201ENST00000558411 CADPSQ9ULU8 1353 aa15.04■□□□□ -0
PCAT29-201ENST00000558411 GSE1Q14687 1217 aa15□□□□□ -0.01
PCAT29-201ENST00000558411 DENND4BO75064 1496 aaPredicted RBP14.99□□□□□ -0.01
PCAT29-201ENST00000558411 DDRGK1Q96HY6 314 aa14.99□□□□□ -0.01
PCAT29-201ENST00000558411 LAS1LQ9Y4W2 734 aaKnown RBP14.99□□□□□ -0.01
PCAT29-201ENST00000558411 PDE4AP27815 886 aa14.99□□□□□ -0.01
PCAT29-201ENST00000558411 BACH2Q9BYV9 841 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms