RNA–Protein interactions for RNA: ENST00000558298.5

RTF1-205, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 5

Gene RTF1, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-205ENST00000558298 KIAA0586Q9BVV6 1533 aa13.23□□□□□ -0.29
RTF1-205ENST00000558298 CARMIL1Q5VZK9 1371 aa13.2□□□□□ -0.3
RTF1-205ENST00000558298 PELP1Q8IZL8 1130 aaKnown RBP13.2□□□□□ -0.3
RTF1-205ENST00000558298 PRXQ9BXM0 1461 aa13.2□□□□□ -0.3
RTF1-205ENST00000558298 RAPGEF2Q9Y4G8 1499 aa13.18□□□□□ -0.3
RTF1-205ENST00000558298 PRG4Q92954 1404 aaPredicted RBP13.18□□□□□ -0.3
RTF1-205ENST00000558298 CHIC1Q5VXU3 224 aa13.14□□□□□ -0.31
RTF1-205ENST00000558298 JPH4Q96JJ6 628 aa13.14□□□□□ -0.31
RTF1-205ENST00000558298 IQGAP2Q13576 1575 aa13.14□□□□□ -0.31
RTF1-205ENST00000558298 CTTNBP2Q8WZ74 1663 aa13.13□□□□□ -0.31
RTF1-205ENST00000558298 KIF21BO75037 1637 aa13.13□□□□□ -0.31
RTF1-205ENST00000558298 UGGT2Q9NYU1 1516 aa13.1□□□□□ -0.31
RTF1-205ENST00000558298 ADCY10Q96PN6 1610 aa13.09□□□□□ -0.31
RTF1-205ENST00000558298 DISP1Q96F81 1524 aa13.08□□□□□ -0.31
RTF1-205ENST00000558298 KIAA0556O60303 1618 aa13.06□□□□□ -0.32
RTF1-205ENST00000558298 CSRNP3Q8WYN3 585 aa13.05□□□□□ -0.32
RTF1-205ENST00000558298 MAPKBP1O60336 1514 aa13.04□□□□□ -0.32
RTF1-205ENST00000558298 KIF13AQ9H1H9 1805 aa13.03□□□□□ -0.32
RTF1-205ENST00000558298 UHRF1BP1LA0JNW5 1464 aa13□□□□□ -0.33
RTF1-205ENST00000558298 CARMIL2Q6F5E8 1435 aa13□□□□□ -0.33
RTF1-205ENST00000558298 TNIKQ9UKE5 1360 aa13□□□□□ -0.33
RTF1-205ENST00000558298 GOLGA3Q08378 1498 aa12.98□□□□□ -0.33
RTF1-205ENST00000558298 SAMD9Q5K651 1589 aa12.98□□□□□ -0.33
RTF1-205ENST00000558298 PTPRGP23470 1445 aa12.97□□□□□ -0.33
RTF1-205ENST00000558298 DIP2BQ9P265 1576 aa12.97□□□□□ -0.33
RTF1-205ENST00000558298 ABCC2Q92887 1545 aa12.97□□□□□ -0.33
RTF1-205ENST00000558298 MYT1Q01538 1121 aa12.96□□□□□ -0.33
RTF1-205ENST00000558298 ABCC10Q5T3U5 1492 aa12.95□□□□□ -0.34
RTF1-205ENST00000558298 EFCAB5A4FU69 1503 aa12.94□□□□□ -0.34
RTF1-205ENST00000558298 KDM5BQ9UGL1 1544 aa12.93□□□□□ -0.34
RTF1-205ENST00000558298 TRHP20396 242 aaPredicted RBP12.93□□□□□ -0.34
RTF1-205ENST00000558298 UACAQ9BZF9 1416 aa12.93□□□□□ -0.34
RTF1-205ENST00000558298 ABCA8O94911 1581 aa12.93□□□□□ -0.34
RTF1-205ENST00000558298 ZCCHC11Q5TAX3 1644 aaKnown RBP12.89□□□□□ -0.35
RTF1-205ENST00000558298 PLB1Q6P1J6 1458 aa12.88□□□□□ -0.35
RTF1-205ENST00000558298 GLI2P10070 1586 aa12.88□□□□□ -0.35
RTF1-205ENST00000558298 HRCP23327 699 aa12.86□□□□□ -0.35
RTF1-205ENST00000558298 PPRC1Q5VV67 1664 aaKnown RBP12.86□□□□□ -0.35
RTF1-205ENST00000558298 ASXL2Q76L83 1435 aa12.85□□□□□ -0.35
RTF1-205ENST00000558298 MAP3K4Q9Y6R4 1608 aa12.82□□□□□ -0.36
RTF1-205ENST00000558298 NPM1P06748 294 aaKnown RBP eCLIP12.82□□□□□ -0.36
RTF1-205ENST00000558298 EPRSP07814 1512 aaKnown RBP12.81□□□□□ -0.36
RTF1-205ENST00000558298 FAM9AQ8IZU1 332 aaPredicted RBP12.8□□□□□ -0.36
RTF1-205ENST00000558298 RAPGEF6Q8TEU7 1601 aa12.8□□□□□ -0.36
RTF1-205ENST00000558298 WDR7Q9Y4E6 1490 aa12.79□□□□□ -0.36
RTF1-205ENST00000558298 ARHGAP35Q9NRY4 1499 aa12.78□□□□□ -0.36
RTF1-205ENST00000558298 FAM69CQ0P6D2 419 aa12.78□□□□□ -0.36
RTF1-205ENST00000558298 TTBK1Q5TCY1 1321 aaPredicted RBP12.77□□□□□ -0.37
RTF1-205ENST00000558298 FHOD3Q2V2M9 1422 aa12.76□□□□□ -0.37
RTF1-205ENST00000558298 NUP153P49790 1475 aaKnown RBP12.76□□□□□ -0.37
RTF1-205ENST00000558298 ATP10BO94823 1461 aa12.75□□□□□ -0.37
RTF1-205ENST00000558298 TSPOAP1O95153 1857 aa12.75□□□□□ -0.37
RTF1-205ENST00000558298 FMN1Q68DA7 1419 aa12.75□□□□□ -0.37
RTF1-205ENST00000558298 CFAP43Q8NDM7 1665 aa12.74□□□□□ -0.37
RTF1-205ENST00000558298 KDM6BO15054 1643 aa12.73□□□□□ -0.37
RTF1-205ENST00000558298 UBTFP17480 764 aaKnown RBP12.72□□□□□ -0.37
RTF1-205ENST00000558298 HECW1Q76N89 1606 aa12.71□□□□□ -0.37
RTF1-205ENST00000558298 ABCA9Q8IUA7 1624 aa12.7□□□□□ -0.38
RTF1-205ENST00000558298 MAGI3Q5TCQ9 1506 aa12.7□□□□□ -0.38
RTF1-205ENST00000558298 P3H3Q8IVL6 736 aa12.69□□□□□ -0.38
RTF1-205ENST00000558298 CLIP1P30622 1438 aa12.68□□□□□ -0.38
RTF1-205ENST00000558298 TEX14Q8IWB6 1497 aa12.67□□□□□ -0.38
RTF1-205ENST00000558298 COL17A1Q9UMD9 1497 aaPredicted RBP12.67□□□□□ -0.38
RTF1-205ENST00000558298 FYCO1Q9BQS8 1478 aa12.66□□□□□ -0.38
RTF1-205ENST00000558298 LRRIQ1Q96JM4 1722 aa12.66□□□□□ -0.38
RTF1-205ENST00000558298 CASKIN1Q8WXD9 1431 aa12.65□□□□□ -0.38
RTF1-205ENST00000558298 CEP162Q5TB80 1403 aa12.64□□□□□ -0.39
RTF1-205ENST00000558298 CCDC18Q5T9S5 1454 aa12.64□□□□□ -0.39
RTF1-205ENST00000558298 PCF11O94913 1555 aaKnown RBP12.64□□□□□ -0.39
RTF1-205ENST00000558298 CD109Q6YHK3 1445 aa12.62□□□□□ -0.39
RTF1-205ENST00000558298 CDK13Q14004 1512 aaKnown RBP12.62□□□□□ -0.39
RTF1-205ENST00000558298 ARAP3Q8WWN8 1544 aa12.6□□□□□ -0.39
RTF1-205ENST00000558298 TTC37Q6PGP7 1564 aa12.6□□□□□ -0.39
RTF1-205ENST00000558298 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.59□□□□□ -0.39
RTF1-205ENST00000558298 RANGAP1P46060 587 aaPredicted RBP12.59□□□□□ -0.39
RTF1-205ENST00000558298 ARID3CA6NKF2 412 aa12.57□□□□□ -0.4
RTF1-205ENST00000558298 NEO1Q92859 1461 aa12.57□□□□□ -0.4
RTF1-205ENST00000558298 FRMPD1Q5SYB0 1578 aa12.56□□□□□ -0.4
RTF1-205ENST00000558298 EHMT2Q96KQ7 1210 aa12.55□□□□□ -0.4
RTF1-205ENST00000558298 KCNH8Q96L42 1107 aa12.55□□□□□ -0.4
RTF1-205ENST00000558298 VPS8Q8N3P4 1428 aa12.54□□□□□ -0.4
RTF1-205ENST00000558298 MAP3K1Q13233 1512 aa12.54□□□□□ -0.4
RTF1-205ENST00000558298 KIF14Q15058 1648 aa12.54□□□□□ -0.4
RTF1-205ENST00000558298 PHLDB1Q86UU1 1377 aa12.54□□□□□ -0.4
RTF1-205ENST00000558298 TROQ12816 1431 aaPredicted RBP12.54□□□□□ -0.4
RTF1-205ENST00000558298 CFAP74Q9C0B2 1584 aa12.53□□□□□ -0.4
RTF1-205ENST00000558298 RICTORQ6R327 1708 aa12.51□□□□□ -0.41
RTF1-205ENST00000558298 PLEKHD1A6NEE1 506 aa12.5□□□□□ -0.41
RTF1-205ENST00000558298 CDK11AQ9UQ88 783 aaPredicted RBP12.5□□□□□ -0.41
RTF1-205ENST00000558298 MYO5CQ9NQX4 1742 aa12.5□□□□□ -0.41
RTF1-205ENST00000558298 EHBP1L1Q8N3D4 1523 aa12.49□□□□□ -0.41
RTF1-205ENST00000558298 ZEB1P37275 1124 aaPredicted RBP12.49□□□□□ -0.41
RTF1-205ENST00000558298 ZMYM4Q5VZL5 1548 aa12.48□□□□□ -0.41
RTF1-205ENST00000558298 FANCAO15360 1455 aa12.48□□□□□ -0.41
RTF1-205ENST00000558298 PLCH2O75038 1416 aa12.48□□□□□ -0.41
RTF1-205ENST00000558298 TIAM1Q13009 1591 aa12.47□□□□□ -0.41
RTF1-205ENST00000558298 LOC105371045A0A1W2PR82 267 aa12.47□□□□□ -0.41
RTF1-205ENST00000558298 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.47□□□□□ -0.41
RTF1-205ENST00000558298 HNRNPUL2Q1KMD3 747 aaKnown RBP12.47□□□□□ -0.41
RTF1-205ENST00000558298 PREX2Q70Z35 1606 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms