RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 PBRM1Q86U86 1689 aa9.45□□□□□ -0.9
SPG11-208ENST00000558155 ABCA10Q8WWZ4 1543 aa9.43□□□□□ -0.9
SPG11-208ENST00000558155 CNKSR2Q8WXI2 1034 aa9.43□□□□□ -0.9
SPG11-208ENST00000558155 RNF216Q9NWF9 866 aaPredicted RBP9.42□□□□□ -0.9
SPG11-208ENST00000558155 NPM1P06748 294 aaKnown RBP eCLIP9.41□□□□□ -0.9
SPG11-208ENST00000558155 GRIN2AQ12879 1464 aa9.4□□□□□ -0.9
SPG11-208ENST00000558155 ERCC6L2Q5T890 1561 aa9.4□□□□□ -0.9
SPG11-208ENST00000558155 CEP170Q5SW79 1584 aa9.39□□□□□ -0.91
SPG11-208ENST00000558155 NUP160Q12769 1436 aa9.39□□□□□ -0.91
SPG11-208ENST00000558155 ABCA5Q8WWZ7 1642 aa9.38□□□□□ -0.91
SPG11-208ENST00000558155 FAM69CQ0P6D2 419 aa9.38□□□□□ -0.91
SPG11-208ENST00000558155 JPH4Q96JJ6 628 aa9.38□□□□□ -0.91
SPG11-208ENST00000558155 WRNQ14191 1432 aaPredicted RBP eCLIP9.38□□□□□ -0.91
SPG11-208ENST00000558155 C1QBPQ07021 282 aaKnown RBP9.37□□□□□ -0.91
SPG11-208ENST00000558155 FHAD1B1AJZ9 1412 aa9.37□□□□□ -0.91
SPG11-208ENST00000558155 PRG4Q92954 1404 aaPredicted RBP9.35□□□□□ -0.91
SPG11-208ENST00000558155 KIF13AQ9H1H9 1805 aa9.35□□□□□ -0.91
SPG11-208ENST00000558155 SHROOM2Q13796 1616 aa9.34□□□□□ -0.91
SPG11-208ENST00000558155 ADAMTS12P58397 1594 aa9.33□□□□□ -0.92
SPG11-208ENST00000558155 ABCC10Q5T3U5 1492 aa9.32□□□□□ -0.92
SPG11-208ENST00000558155 KDM4FA0A1W2PPD8 638 aa9.31□□□□□ -0.92
SPG11-208ENST00000558155 ERICH3Q5RHP9 1530 aa9.31□□□□□ -0.92
SPG11-208ENST00000558155 SUPT5HO00267 1087 aaKnown RBP9.29□□□□□ -0.92
SPG11-208ENST00000558155 ILDR1Q86SU0 546 aaPredicted RBP9.28□□□□□ -0.92
SPG11-208ENST00000558155 TOP2BQ02880 1626 aa9.27□□□□□ -0.92
SPG11-208ENST00000558155 MAPKBP1O60336 1514 aa9.26□□□□□ -0.93
SPG11-208ENST00000558155 BIVM-ERCC5R4GMW8 1640 aa9.26□□□□□ -0.93
SPG11-208ENST00000558155 KDM6BO15054 1643 aa9.24□□□□□ -0.93
SPG11-208ENST00000558155 DIP2BQ9P265 1576 aa9.24□□□□□ -0.93
SPG11-208ENST00000558155 TSPOAP1O95153 1857 aa9.23□□□□□ -0.93
SPG11-208ENST00000558155 ADCY10Q96PN6 1610 aa9.21□□□□□ -0.93
SPG11-208ENST00000558155 PTPRGP23470 1445 aa9.21□□□□□ -0.94
SPG11-208ENST00000558155 KIAA0586Q9BVV6 1533 aa9.21□□□□□ -0.94
SPG11-208ENST00000558155 TTBK1Q5TCY1 1321 aaPredicted RBP9.2□□□□□ -0.94
SPG11-208ENST00000558155 RUSC2Q8N2Y8 1516 aa9.19□□□□□ -0.94
SPG11-208ENST00000558155 IGF1RP08069 1367 aa9.17□□□□□ -0.94
SPG11-208ENST00000558155 PLB1Q6P1J6 1458 aa9.15□□□□□ -0.94
SPG11-208ENST00000558155 CARMIL2Q6F5E8 1435 aa9.15□□□□□ -0.94
SPG11-208ENST00000558155 TNIKQ9UKE5 1360 aa9.15□□□□□ -0.94
SPG11-208ENST00000558155 KIF27Q86VH2 1401 aa9.14□□□□□ -0.95
SPG11-208ENST00000558155 ASXL2Q76L83 1435 aa9.14□□□□□ -0.95
SPG11-208ENST00000558155 ABCC2Q92887 1545 aa9.13□□□□□ -0.95
SPG11-208ENST00000558155 ADGRL1O94910 1474 aa9.13□□□□□ -0.95
SPG11-208ENST00000558155 CARMIL1Q5VZK9 1371 aa9.12□□□□□ -0.95
SPG11-208ENST00000558155 GLI2P10070 1586 aa9.12□□□□□ -0.95
SPG11-208ENST00000558155 CUL7Q14999 1698 aa9.11□□□□□ -0.95
SPG11-208ENST00000558155 UACAQ9BZF9 1416 aa9.1□□□□□ -0.95
SPG11-208ENST00000558155 UHRF1BP1LA0JNW5 1464 aa9.09□□□□□ -0.95
SPG11-208ENST00000558155 TEX14Q8IWB6 1497 aa9.09□□□□□ -0.95
SPG11-208ENST00000558155 COL17A1Q9UMD9 1497 aaPredicted RBP9.08□□□□□ -0.96
SPG11-208ENST00000558155 PPRC1Q5VV67 1664 aaKnown RBP9.08□□□□□ -0.96
SPG11-208ENST00000558155 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.08□□□□□ -0.969e-6■□□□□ 10.7
SPG11-208ENST00000558155 EPRSP07814 1512 aaKnown RBP9.06□□□□□ -0.96
SPG11-208ENST00000558155 HECW2Q9P2P5 1572 aa9.06□□□□□ -0.96
SPG11-208ENST00000558155 KDM5BQ9UGL1 1544 aa9.05□□□□□ -0.96
SPG11-208ENST00000558155 IQGAP2Q13576 1575 aa9.05□□□□□ -0.96
SPG11-208ENST00000558155 NPM3O75607 178 aaKnown RBP9.04□□□□□ -0.96
SPG11-208ENST00000558155 FBXO41Q8TF61 875 aa9.04□□□□□ -0.96
SPG11-208ENST00000558155 KCNH8Q96L42 1107 aa9.04□□□□□ -0.96
SPG11-208ENST00000558155 MAP3K4Q9Y6R4 1608 aa9.04□□□□□ -0.96
SPG11-208ENST00000558155 NCBP3Q53F19 620 aaKnown RBP9.03□□□□□ -0.96
SPG11-208ENST00000558155 FAM9AQ8IZU1 332 aaPredicted RBP9.03□□□□□ -0.96
SPG11-208ENST00000558155 DISP1Q96F81 1524 aa9.02□□□□□ -0.97
SPG11-208ENST00000558155 CD109Q6YHK3 1445 aa9.01□□□□□ -0.97
SPG11-208ENST00000558155 ZCCHC11Q5TAX3 1644 aaKnown RBP9□□□□□ -0.97
SPG11-208ENST00000558155 WDR7Q9Y4E6 1490 aa8.99□□□□□ -0.97
SPG11-208ENST00000558155 UGGT2Q9NYU1 1516 aa8.99□□□□□ -0.97
SPG11-208ENST00000558155 RAPGEF2Q9Y4G8 1499 aa8.98□□□□□ -0.97
SPG11-208ENST00000558155 MAGI3Q5TCQ9 1506 aa8.98□□□□□ -0.97
SPG11-208ENST00000558155 KIAA0556O60303 1618 aa8.95□□□□□ -0.98
SPG11-208ENST00000558155 CFAP43Q8NDM7 1665 aa8.95□□□□□ -0.98
SPG11-208ENST00000558155 U3KPZ7 1027 aaPredicted RBP8.95□□□□□ -0.98
SPG11-208ENST00000558155 PHLDB1Q86UU1 1377 aa8.94□□□□□ -0.98
SPG11-208ENST00000558155 GOLGA3Q08378 1498 aa8.94□□□□□ -0.98
SPG11-208ENST00000558155 ARAP3Q8WWN8 1544 aa8.92□□□□□ -0.98
SPG11-208ENST00000558155 ARID4BQ4LE39 1312 aaPredicted RBP8.92□□□□□ -0.98
SPG11-208ENST00000558155 SPINK5Q9NQ38 1064 aaPredicted RBP8.92□□□□□ -0.98
SPG11-208ENST00000558155 KIF21BO75037 1637 aa8.91□□□□□ -0.98
SPG11-208ENST00000558155 PTPRMP28827 1452 aa8.9□□□□□ -0.98
SPG11-208ENST00000558155 RAPGEF3O95398 923 aa8.9□□□□□ -0.98
SPG11-208ENST00000558155 DSG3P32926 999 aa8.9□□□□□ -0.98
SPG11-208ENST00000558155 POTEHQ6S545 545 aa8.9□□□□□ -0.98
SPG11-208ENST00000558155 ABCA8O94911 1581 aa8.9□□□□□ -0.99
SPG11-208ENST00000558155 ARID3CA6NKF2 412 aa8.89□□□□□ -0.99
SPG11-208ENST00000558155 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.88□□□□□ -0.99
SPG11-208ENST00000558155 HNRNPUL2Q1KMD3 747 aaKnown RBP8.88□□□□□ -0.99
SPG11-208ENST00000558155 P3H3Q8IVL6 736 aa8.88□□□□□ -0.99
SPG11-208ENST00000558155 ADAMTSL3P82987 1691 aa8.87□□□□□ -0.99
SPG11-208ENST00000558155 CTTNBP2Q8WZ74 1663 aa8.87□□□□□ -0.99
SPG11-208ENST00000558155 ATP10BO94823 1461 aa8.86□□□□□ -0.99
SPG11-208ENST00000558155 NEO1Q92859 1461 aa8.85□□□□□ -0.99
SPG11-208ENST00000558155 CERKQ8TCT0 537 aa8.84□□□□□ -0.99
SPG11-208ENST00000558155 BCORL1Q5H9F3 1711 aa8.83□□□□□ -1
SPG11-208ENST00000558155 PCF11O94913 1555 aaKnown RBP8.83□□□□□ -1
SPG11-208ENST00000558155 PLEKHD1A6NEE1 506 aa8.83□□□□□ -1
SPG11-208ENST00000558155 ABCA9Q8IUA7 1624 aa8.83□□□□□ -1
SPG11-208ENST00000558155 LMTK3Q96Q04 1460 aa8.83□□□□□ -1
SPG11-208ENST00000558155 CAPN15O75808 1086 aa8.82□□□□□ -1
SPG11-208ENST00000558155 HSPA2P54652 639 aa8.82□□□□□ -1
SPG11-208ENST00000558155 POGZQ7Z3K3 1410 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 249.6 ms