RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 LOC105371045A0A1W2PR82 267 aa20.06■□□□□ 0.8
TPM1-209ENST00000558072 UBTFP17480 764 aaKnown RBP20.03■□□□□ 0.8
TPM1-209ENST00000558072 OSCARQ8IYS5 282 aa20.03■□□□□ 0.8
TPM1-209ENST00000558072 IQGAP2Q13576 1575 aa20.02■□□□□ 0.8
TPM1-209ENST00000558072 ERCC6L2Q5T890 1561 aa20■□□□□ 0.79
TPM1-209ENST00000558072 RANGAP1P46060 587 aaPredicted RBP19.99■□□□□ 0.79
TPM1-209ENST00000558072 KIAA0586Q9BVV6 1533 aa19.98■□□□□ 0.79
TPM1-209ENST00000558072 TNIKQ9UKE5 1360 aa19.97■□□□□ 0.79
TPM1-209ENST00000558072 SHROOM2Q13796 1616 aa19.97■□□□□ 0.79
TPM1-209ENST00000558072 PRG4Q92954 1404 aaPredicted RBP19.88■□□□□ 0.77
TPM1-209ENST00000558072 RIMBP3CA6NJZ7 1639 aa19.87■□□□□ 0.77
TPM1-209ENST00000558072 RIMBP3BA6NNM3 1639 aa19.87■□□□□ 0.77
TPM1-209ENST00000558072 RIMBP3Q9UFD9 1639 aa19.87■□□□□ 0.77
TPM1-209ENST00000558072 UGGT2Q9NYU1 1516 aa19.87■□□□□ 0.77
TPM1-209ENST00000558072 ARHGEF11O15085 1522 aa19.86■□□□□ 0.77
TPM1-209ENST00000558072 DISP1Q96F81 1524 aa19.86■□□□□ 0.77
TPM1-209ENST00000558072 JPH4Q96JJ6 628 aa19.86■□□□□ 0.77
TPM1-209ENST00000558072 KIAA0556O60303 1618 aa19.86■□□□□ 0.77
TPM1-209ENST00000558072 SAMD9Q5K651 1589 aa19.83■□□□□ 0.77
TPM1-209ENST00000558072 P3H3Q8IVL6 736 aa19.83■□□□□ 0.77
TPM1-209ENST00000558072 TTBK1Q5TCY1 1321 aaPredicted RBP19.81■□□□□ 0.76
TPM1-209ENST00000558072 CEP162Q5TB80 1403 aa19.8■□□□□ 0.76
TPM1-209ENST00000558072 ARHGAP35Q9NRY4 1499 aa19.79■□□□□ 0.76
TPM1-209ENST00000558072 FHOD3Q2V2M9 1422 aa19.79■□□□□ 0.76
TPM1-209ENST00000558072 ARAP1Q96P48 1450 aa19.77■□□□□ 0.76
TPM1-209ENST00000558072 CLIP1P30622 1438 aa19.76■□□□□ 0.75
TPM1-209ENST00000558072 DNAJC5Q9H3Z4 198 aa19.75■□□□□ 0.75
TPM1-209ENST00000558072 EFCAB5A4FU69 1503 aa19.74■□□□□ 0.75
TPM1-209ENST00000558072 CARMIL2Q6F5E8 1435 aa19.72■□□□□ 0.75
TPM1-209ENST00000558072 PLB1Q6P1J6 1458 aa19.63■□□□□ 0.73
TPM1-209ENST00000558072 PTPRGP23470 1445 aa19.63■□□□□ 0.73
TPM1-209ENST00000558072 PCF11O94913 1555 aaKnown RBP19.62■□□□□ 0.73
TPM1-209ENST00000558072 ADCY10Q96PN6 1610 aa19.61■□□□□ 0.73
TPM1-209ENST00000558072 CYB5RLQ6IPT4 315 aa19.6■□□□□ 0.73
TPM1-209ENST00000558072 ABCA8O94911 1581 aa19.59■□□□□ 0.73
TPM1-209ENST00000558072 FMN1Q68DA7 1419 aa19.58■□□□□ 0.72
TPM1-209ENST00000558072 RAPGEF6Q8TEU7 1601 aa19.58■□□□□ 0.72
TPM1-209ENST00000558072 ARID3CA6NKF2 412 aa19.57■□□□□ 0.72
TPM1-209ENST00000558072 LRRIQ1Q96JM4 1722 aa19.56■□□□□ 0.72
TPM1-209ENST00000558072 ABCC2Q92887 1545 aa19.53■□□□□ 0.72
TPM1-209ENST00000558072 UACAQ9BZF9 1416 aa19.52■□□□□ 0.72
TPM1-209ENST00000558072 VPS8Q8N3P4 1428 aa19.51■□□□□ 0.71
TPM1-209ENST00000558072 NUP153P49790 1475 aaKnown RBP19.5■□□□□ 0.71
TPM1-209ENST00000558072 CDK13Q14004 1512 aaKnown RBP19.5■□□□□ 0.71
TPM1-209ENST00000558072 ZCCHC11Q5TAX3 1644 aaKnown RBP19.48■□□□□ 0.71
TPM1-209ENST00000558072 HECW1Q76N89 1606 aa19.48■□□□□ 0.71
TPM1-209ENST00000558072 ATP1B4Q9UN42 357 aaPredicted RBP19.48■□□□□ 0.71
TPM1-209ENST00000558072 APLP2Q06481 763 aa19.47■□□□□ 0.71
TPM1-209ENST00000558072 UHRF1BP1LA0JNW5 1464 aa19.46■□□□□ 0.71
TPM1-209ENST00000558072 CASKIN1Q8WXD9 1431 aa19.44■□□□□ 0.7
TPM1-209ENST00000558072 FYCO1Q9BQS8 1478 aa19.44■□□□□ 0.7
TPM1-209ENST00000558072 ATP10BO94823 1461 aa19.41■□□□□ 0.7
TPM1-209ENST00000558072 EPRSP07814 1512 aaKnown RBP19.4■□□□□ 0.7
TPM1-209ENST00000558072 KDM5BQ9UGL1 1544 aa19.39■□□□□ 0.69
TPM1-209ENST00000558072 CFAP43Q8NDM7 1665 aa19.38■□□□□ 0.69
TPM1-209ENST00000558072 MAGI3Q5TCQ9 1506 aa19.36■□□□□ 0.69
TPM1-209ENST00000558072 MAP3K1Q13233 1512 aa19.34■□□□□ 0.69
TPM1-209ENST00000558072 CCDC18Q5T9S5 1454 aa19.34■□□□□ 0.69
TPM1-209ENST00000558072 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.33■□□□□ 0.68
TPM1-209ENST00000558072 HNRNPUL2Q1KMD3 747 aaKnown RBP19.33■□□□□ 0.68
TPM1-209ENST00000558072 TIAM1Q13009 1591 aa19.32■□□□□ 0.68
TPM1-209ENST00000558072 CDK11AQ9UQ88 783 aaPredicted RBP19.32■□□□□ 0.68
TPM1-209ENST00000558072 ASXL2Q76L83 1435 aa19.31■□□□□ 0.68
TPM1-209ENST00000558072 MAPKBP1O60336 1514 aa19.28■□□□□ 0.68
TPM1-209ENST00000558072 KIF14Q15058 1648 aa19.28■□□□□ 0.68
TPM1-209ENST00000558072 PPARGC1BQ86YN6 1023 aaKnown RBP19.27■□□□□ 0.68
TPM1-209ENST00000558072 NPM1P06748 294 aaKnown RBP eCLIP19.26■□□□□ 0.67
TPM1-209ENST00000558072 WDR7Q9Y4E6 1490 aa19.25■□□□□ 0.67
TPM1-209ENST00000558072 KANK4Q5T7N3 995 aaPredicted RBP19.24■□□□□ 0.67
TPM1-209ENST00000558072 DIP2BQ9P265 1576 aa19.23■□□□□ 0.67
TPM1-209ENST00000558072 KIF13AQ9H1H9 1805 aa19.22■□□□□ 0.67
TPM1-209ENST00000558072 TTC37Q6PGP7 1564 aa19.2■□□□□ 0.66
TPM1-209ENST00000558072 KCNH8Q96L42 1107 aa19.2■□□□□ 0.66
TPM1-209ENST00000558072 EHBP1L1Q8N3D4 1523 aa19.2■□□□□ 0.66
TPM1-209ENST00000558072 TROQ12816 1431 aaPredicted RBP19.19■□□□□ 0.66
TPM1-209ENST00000558072 PLEKHD1A6NEE1 506 aa19.19■□□□□ 0.66
TPM1-209ENST00000558072 LRRC9Q6ZRR7 1453 aa19.19■□□□□ 0.66
TPM1-209ENST00000558072 MTUS2Q5JR59 1369 aa19.18■□□□□ 0.66
TPM1-209ENST00000558072 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.15■□□□□ 0.66
TPM1-209ENST00000558072 ABCC10Q5T3U5 1492 aa19.15■□□□□ 0.66
TPM1-209ENST00000558072 TSPOAP1O95153 1857 aa19.12■□□□□ 0.65
TPM1-209ENST00000558072 SUPT6HQ7KZ85 1726 aaKnown RBP19.12■□□□□ 0.65
TPM1-209ENST00000558072 ABCA9Q8IUA7 1624 aa19.11■□□□□ 0.65
TPM1-209ENST00000558072 MAP3K4Q9Y6R4 1608 aa19.1■□□□□ 0.65
TPM1-209ENST00000558072 NCOA2Q15596 1464 aa19.09■□□□□ 0.65
TPM1-209ENST00000558072 PPRC1Q5VV67 1664 aaKnown RBP19.09■□□□□ 0.65
TPM1-209ENST00000558072 FAM69CQ0P6D2 419 aa19.09■□□□□ 0.65
TPM1-209ENST00000558072 CDC42BPAQ5VT25 1732 aa19.08■□□□□ 0.65
TPM1-209ENST00000558072 GLI2P10070 1586 aa19.08■□□□□ 0.65
TPM1-209ENST00000558072 TRHP20396 242 aaPredicted RBP19.08■□□□□ 0.64
TPM1-209ENST00000558072 MYO5CQ9NQX4 1742 aa19.06■□□□□ 0.64
TPM1-209ENST00000558072 PREX2Q70Z35 1606 aa19.04■□□□□ 0.64
TPM1-209ENST00000558072 CDC42BPBQ9Y5S2 1711 aa19.04■□□□□ 0.64
TPM1-209ENST00000558072 PHLDB1Q86UU1 1377 aa19.03■□□□□ 0.64
TPM1-209ENST00000558072 CD109Q6YHK3 1445 aa19■□□□□ 0.63
TPM1-209ENST00000558072 GPATCH8Q9UKJ3 1502 aaKnown RBP19■□□□□ 0.63
TPM1-209ENST00000558072 ITSN2Q9NZM3 1697 aa18.99■□□□□ 0.63
TPM1-209ENST00000558072 CCNB3Q8WWL7 1395 aa18.98■□□□□ 0.63
TPM1-209ENST00000558072 ARHGAP5Q13017 1502 aa18.98■□□□□ 0.63
TPM1-209ENST00000558072 SAMD9LQ8IVG5 1584 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms