RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ADCY10Q96PN6 1610 aa14.84□□□□□ -0.03
CCDC88C-214ENST00000557507 SUPT5HO00267 1087 aaKnown RBP14.83□□□□□ -0.04
CCDC88C-214ENST00000557507 TSPOAP1O95153 1857 aa14.82□□□□□ -0.04
CCDC88C-214ENST00000557507 MAPKBP1O60336 1514 aa14.82□□□□□ -0.04
CCDC88C-214ENST00000557507 ABCC10Q5T3U5 1492 aa14.79□□□□□ -0.04
CCDC88C-214ENST00000557507 JPH4Q96JJ6 628 aa14.76□□□□□ -0.05
CCDC88C-214ENST00000557507 KDM6BO15054 1643 aa14.76□□□□□ -0.05
CCDC88C-214ENST00000557507 CUL7Q14999 1698 aa14.74□□□□□ -0.05
CCDC88C-214ENST00000557507 FAM69CQ0P6D2 419 aa14.72□□□□□ -0.05
CCDC88C-214ENST00000557507 KIAA0586Q9BVV6 1533 aa14.69□□□□□ -0.06
CCDC88C-214ENST00000557507 PPRC1Q5VV67 1664 aaKnown RBP14.68□□□□□ -0.06
CCDC88C-214ENST00000557507 NPM1P06748 294 aaKnown RBP eCLIP14.65□□□□□ -0.06
CCDC88C-214ENST00000557507 IGF1RP08069 1367 aa14.61□□□□□ -0.07
CCDC88C-214ENST00000557507 KDM4FA0A1W2PPD8 638 aa14.61□□□□□ -0.07
CCDC88C-214ENST00000557507 KIF27Q86VH2 1401 aa14.6□□□□□ -0.07
CCDC88C-214ENST00000557507 ABCC2Q92887 1545 aa14.58□□□□□ -0.08
CCDC88C-214ENST00000557507 GLI2P10070 1586 aa14.58□□□□□ -0.08
CCDC88C-214ENST00000557507 IQGAP2Q13576 1575 aa14.58□□□□□ -0.08
CCDC88C-214ENST00000557507 PTPRGP23470 1445 aa14.56□□□□□ -0.08
CCDC88C-214ENST00000557507 MAP3K4Q9Y6R4 1608 aa14.55□□□□□ -0.08
CCDC88C-214ENST00000557507 ASXL2Q76L83 1435 aa14.54□□□□□ -0.08
CCDC88C-214ENST00000557507 ZCCHC11Q5TAX3 1644 aaKnown RBP14.52□□□□□ -0.08
CCDC88C-214ENST00000557507 TNIKQ9UKE5 1360 aa14.52□□□□□ -0.08
CCDC88C-214ENST00000557507 DISP1Q96F81 1524 aa14.51□□□□□ -0.09
CCDC88C-214ENST00000557507 UHRF1BP1LA0JNW5 1464 aa14.51□□□□□ -0.09
CCDC88C-214ENST00000557507 ADGRL1O94910 1474 aa14.51□□□□□ -0.09
CCDC88C-214ENST00000557507 PLB1Q6P1J6 1458 aa14.51□□□□□ -0.09
CCDC88C-214ENST00000557507 CARMIL2Q6F5E8 1435 aa14.51□□□□□ -0.09
CCDC88C-214ENST00000557507 CARMIL1Q5VZK9 1371 aa14.51□□□□□ -0.09
CCDC88C-214ENST00000557507 TTBK1Q5TCY1 1321 aaPredicted RBP14.51□□□□□ -0.09
CCDC88C-214ENST00000557507 KIAA0556O60303 1618 aa14.48□□□□□ -0.09
CCDC88C-214ENST00000557507 COL17A1Q9UMD9 1497 aaPredicted RBP14.47□□□□□ -0.09
CCDC88C-214ENST00000557507 UACAQ9BZF9 1416 aa14.47□□□□□ -0.09
CCDC88C-214ENST00000557507 EPRSP07814 1512 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-214ENST00000557507 KDM5BQ9UGL1 1544 aa14.46□□□□□ -0.09
CCDC88C-214ENST00000557507 CTTNBP2Q8WZ74 1663 aa14.46□□□□□ -0.09
CCDC88C-214ENST00000557507 UGGT2Q9NYU1 1516 aa14.46□□□□□ -0.1
CCDC88C-214ENST00000557507 HECW2Q9P2P5 1572 aa14.43□□□□□ -0.1
CCDC88C-214ENST00000557507 TEX14Q8IWB6 1497 aa14.42□□□□□ -0.1
CCDC88C-214ENST00000557507 ILDR1Q86SU0 546 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-214ENST00000557507 CFAP43Q8NDM7 1665 aa14.39□□□□□ -0.11
CCDC88C-214ENST00000557507 RAPGEF2Q9Y4G8 1499 aa14.38□□□□□ -0.11
CCDC88C-214ENST00000557507 WDR7Q9Y4E6 1490 aa14.37□□□□□ -0.11
CCDC88C-214ENST00000557507 KIF21BO75037 1637 aa14.36□□□□□ -0.11
CCDC88C-214ENST00000557507 ABCA8O94911 1581 aa14.34□□□□□ -0.11
CCDC88C-214ENST00000557507 MAGI3Q5TCQ9 1506 aa14.31□□□□□ -0.12
CCDC88C-214ENST00000557507 GOLGA3Q08378 1498 aa14.26□□□□□ -0.13
CCDC88C-214ENST00000557507 CD109Q6YHK3 1445 aa14.26□□□□□ -0.13
CCDC88C-214ENST00000557507 ADAMTSL3P82987 1691 aa14.22□□□□□ -0.13
CCDC88C-214ENST00000557507 ABCA9Q8IUA7 1624 aa14.22□□□□□ -0.13
CCDC88C-214ENST00000557507 ARAP3Q8WWN8 1544 aa14.2□□□□□ -0.14
CCDC88C-214ENST00000557507 PRXQ9BXM0 1461 aa14.19□□□□□ -0.14
CCDC88C-214ENST00000557507 KCNH8Q96L42 1107 aa14.19□□□□□ -0.14
CCDC88C-214ENST00000557507 FRMPD1Q5SYB0 1578 aa14.18□□□□□ -0.14
CCDC88C-214ENST00000557507 BCORL1Q5H9F3 1711 aa14.17□□□□□ -0.14
CCDC88C-214ENST00000557507 SAMD9Q5K651 1589 aa14.17□□□□□ -0.14
CCDC88C-214ENST00000557507 RAPGEF6Q8TEU7 1601 aa14.15□□□□□ -0.14
CCDC88C-214ENST00000557507 ATP10BO94823 1461 aa14.15□□□□□ -0.14
CCDC88C-214ENST00000557507 MADDQ8WXG6 1647 aa14.15□□□□□ -0.14
CCDC88C-214ENST00000557507 ARID3CA6NKF2 412 aa14.13□□□□□ -0.15
CCDC88C-214ENST00000557507 PTPRMP28827 1452 aa14.12□□□□□ -0.15
CCDC88C-214ENST00000557507 RICTORQ6R327 1708 aa14.12□□□□□ -0.15
CCDC88C-214ENST00000557507 RIMS1Q86UR5 1692 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-214ENST00000557507 ARHGEF40Q8TER5 1519 aa14.1□□□□□ -0.15
CCDC88C-214ENST00000557507 NEO1Q92859 1461 aa14.09□□□□□ -0.15
CCDC88C-214ENST00000557507 PCF11O94913 1555 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-214ENST00000557507 SIGLEC1Q9BZZ2 1709 aa14.08□□□□□ -0.16
CCDC88C-214ENST00000557507 P3H3Q8IVL6 736 aa14.07□□□□□ -0.16
CCDC88C-214ENST00000557507 PHLDB1Q86UU1 1377 aa14.06□□□□□ -0.16
CCDC88C-214ENST00000557507 NUP153P49790 1475 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-214ENST00000557507 LMTK3Q96Q04 1460 aa14.06□□□□□ -0.16
CCDC88C-214ENST00000557507 RAPGEF3O95398 923 aa14.05□□□□□ -0.16
CCDC88C-214ENST00000557507 FBXO41Q8TF61 875 aa14.04□□□□□ -0.16
CCDC88C-214ENST00000557507 CFAP74Q9C0B2 1584 aa14.04□□□□□ -0.16
CCDC88C-214ENST00000557507 TTC37Q6PGP7 1564 aa14.03□□□□□ -0.16
CCDC88C-214ENST00000557507 FER1L4A9Z1Z3 1794 aa14.02□□□□□ -0.16
CCDC88C-214ENST00000557507 ZMYM4Q5VZL5 1548 aa14□□□□□ -0.17
CCDC88C-214ENST00000557507 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14□□□□□ -0.17
CCDC88C-214ENST00000557507 FHOD3Q2V2M9 1422 aa13.98□□□□□ -0.17
CCDC88C-214ENST00000557507 DENND4BO75064 1496 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-214ENST00000557507 ARID4BQ4LE39 1312 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-214ENST00000557507 ZFYVE16Q7Z3T8 1539 aa13.96□□□□□ -0.17
CCDC88C-214ENST00000557507 FANCAO15360 1455 aa13.96□□□□□ -0.17
CCDC88C-214ENST00000557507 FAM9AQ8IZU1 332 aaPredicted RBP13.96□□□□□ -0.17
CCDC88C-214ENST00000557507 AKNAQ7Z591 1439 aa13.96□□□□□ -0.18
CCDC88C-214ENST00000557507 EFCAB5A4FU69 1503 aa13.95□□□□□ -0.18
CCDC88C-214ENST00000557507 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.95□□□□□ -0.18
CCDC88C-214ENST00000557507 HNRNPUL2Q1KMD3 747 aaKnown RBP13.95□□□□□ -0.18
CCDC88C-214ENST00000557507 HECW1Q76N89 1606 aa13.94□□□□□ -0.18
CCDC88C-214ENST00000557507 MYO5CQ9NQX4 1742 aa13.93□□□□□ -0.18
CCDC88C-214ENST00000557507 YEATS2Q9ULM3 1422 aa13.93□□□□□ -0.18
CCDC88C-214ENST00000557507 PREX1Q8TCU6 1659 aa13.92□□□□□ -0.18
CCDC88C-214ENST00000557507 CDK13Q14004 1512 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-214ENST00000557507 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
CCDC88C-214ENST00000557507 RANGAP1P46060 587 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-214ENST00000557507 CHIC1Q5VXU3 224 aa13.9□□□□□ -0.18
CCDC88C-214ENST00000557507 HSPA2P54652 639 aa13.89□□□□□ -0.19
CCDC88C-214ENST00000557507 POGZQ7Z3K3 1410 aa13.89□□□□□ -0.19
CCDC88C-214ENST00000557507 LRRIQ1Q96JM4 1722 aa13.88□□□□□ -0.19
CCDC88C-214ENST00000557507 MAGI2Q86UL8 1455 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms