RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 KIAA0586Q9BVV6 1533 aa23.19■■□□□ 1.3
VPS33B-206ENST00000557358 PRG4Q92954 1404 aaPredicted RBP23.17■■□□□ 1.3
VPS33B-206ENST00000557358 RAPGEF2Q9Y4G8 1499 aa23.17■■□□□ 1.3
VPS33B-206ENST00000557358 ERCC6L2Q5T890 1561 aa23.1■■□□□ 1.29
VPS33B-206ENST00000557358 EEA1Q15075 1411 aa23.07■■□□□ 1.28
VPS33B-206ENST00000557358 TRHP20396 242 aaPredicted RBP23.05■■□□□ 1.28
VPS33B-206ENST00000557358 CARMIL2Q6F5E8 1435 aa23.05■■□□□ 1.28
VPS33B-206ENST00000557358 IQGAP2Q13576 1575 aa23.05■■□□□ 1.28
VPS33B-206ENST00000557358 CSRNP3Q8WYN3 585 aa23.03■■□□□ 1.28
VPS33B-206ENST00000557358 PRXQ9BXM0 1461 aa22.98■■□□□ 1.27
VPS33B-206ENST00000557358 CHIC1Q5VXU3 224 aa22.98■■□□□ 1.27
VPS33B-206ENST00000557358 NPM1P06748 294 aaKnown RBP eCLIP22.97■■□□□ 1.27
VPS33B-206ENST00000557358 CTTNBP2Q8WZ74 1663 aa22.93■■□□□ 1.26
VPS33B-206ENST00000557358 PTPRGP23470 1445 aa22.92■■□□□ 1.26
VPS33B-206ENST00000557358 TNIKQ9UKE5 1360 aa22.92■■□□□ 1.26
VPS33B-206ENST00000557358 FAM9AQ8IZU1 332 aaPredicted RBP22.91■■□□□ 1.26
VPS33B-206ENST00000557358 TTBK1Q5TCY1 1321 aaPredicted RBP22.9■■□□□ 1.26
VPS33B-206ENST00000557358 UGGT2Q9NYU1 1516 aa22.88■■□□□ 1.25
VPS33B-206ENST00000557358 GOLGA3Q08378 1498 aa22.86■■□□□ 1.25
VPS33B-206ENST00000557358 DISP1Q96F81 1524 aa22.82■■□□□ 1.24
VPS33B-206ENST00000557358 KIAA0556O60303 1618 aa22.79■■□□□ 1.24
VPS33B-206ENST00000557358 ADCY10Q96PN6 1610 aa22.78■■□□□ 1.24
VPS33B-206ENST00000557358 KIF21BO75037 1637 aa22.75■■□□□ 1.23
VPS33B-206ENST00000557358 UACAQ9BZF9 1416 aa22.74■■□□□ 1.23
VPS33B-206ENST00000557358 MAPKBP1O60336 1514 aa22.71■■□□□ 1.23
VPS33B-206ENST00000557358 UHRF1BP1LA0JNW5 1464 aa22.7■■□□□ 1.22
VPS33B-206ENST00000557358 ABCC2Q92887 1545 aa22.69■■□□□ 1.22
VPS33B-206ENST00000557358 UBTFP17480 764 aaKnown RBP22.69■■□□□ 1.22
VPS33B-206ENST00000557358 RANGAP1P46060 587 aaPredicted RBP22.65■■□□□ 1.22
VPS33B-206ENST00000557358 FAM69CQ0P6D2 419 aa22.64■■□□□ 1.21
VPS33B-206ENST00000557358 P3H3Q8IVL6 736 aa22.63■■□□□ 1.21
VPS33B-206ENST00000557358 ABCC10Q5T3U5 1492 aa22.62■■□□□ 1.21
VPS33B-206ENST00000557358 EHMT2Q96KQ7 1210 aa22.62■■□□□ 1.21
VPS33B-206ENST00000557358 PLB1Q6P1J6 1458 aa22.6■■□□□ 1.21
VPS33B-206ENST00000557358 KIF13AQ9H1H9 1805 aa22.58■■□□□ 1.21
VPS33B-206ENST00000557358 SAMD9Q5K651 1589 aa22.58■■□□□ 1.2
VPS33B-206ENST00000557358 KDM5BQ9UGL1 1544 aa22.57■■□□□ 1.2
VPS33B-206ENST00000557358 ASXL2Q76L83 1435 aa22.56■■□□□ 1.2
VPS33B-206ENST00000557358 DIP2BQ9P265 1576 aa22.55■■□□□ 1.2
VPS33B-206ENST00000557358 EFCAB5A4FU69 1503 aa22.54■■□□□ 1.2
VPS33B-206ENST00000557358 ABCA8O94911 1581 aa22.54■■□□□ 1.2
VPS33B-206ENST00000557358 ZCCHC11Q5TAX3 1644 aaKnown RBP22.53■■□□□ 1.2
VPS33B-206ENST00000557358 FHOD3Q2V2M9 1422 aa22.47■■□□□ 1.19
VPS33B-206ENST00000557358 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
VPS33B-206ENST00000557358 HNRNPUL2Q1KMD3 747 aaKnown RBP22.45■■□□□ 1.18
VPS33B-206ENST00000557358 RAPGEF6Q8TEU7 1601 aa22.45■■□□□ 1.18
VPS33B-206ENST00000557358 WDR7Q9Y4E6 1490 aa22.44■■□□□ 1.18
VPS33B-206ENST00000557358 TSPOAP1O95153 1857 aa22.43■■□□□ 1.18
VPS33B-206ENST00000557358 GLI2P10070 1586 aa22.42■■□□□ 1.18
VPS33B-206ENST00000557358 ARID3CA6NKF2 412 aa22.41■■□□□ 1.18
VPS33B-206ENST00000557358 EPRSP07814 1512 aaKnown RBP22.41■■□□□ 1.18
VPS33B-206ENST00000557358 KCNH8Q96L42 1107 aa22.39■■□□□ 1.17
VPS33B-206ENST00000557358 FMN1Q68DA7 1419 aa22.38■■□□□ 1.17
VPS33B-206ENST00000557358 ATP10BO94823 1461 aa22.36■■□□□ 1.17
VPS33B-206ENST00000557358 TEX14Q8IWB6 1497 aa22.34■■□□□ 1.17
VPS33B-206ENST00000557358 ATP1B4Q9UN42 357 aaPredicted RBP22.33■■□□□ 1.17
VPS33B-206ENST00000557358 ARHGAP35Q9NRY4 1499 aa22.32■■□□□ 1.16
VPS33B-206ENST00000557358 NUP153P49790 1475 aaKnown RBP22.31■■□□□ 1.16
VPS33B-206ENST00000557358 PLEKHD1A6NEE1 506 aa22.3■■□□□ 1.16
VPS33B-206ENST00000557358 KDM6BO15054 1643 aa22.29■■□□□ 1.16
VPS33B-206ENST00000557358 MAP3K4Q9Y6R4 1608 aa22.29■■□□□ 1.16
VPS33B-206ENST00000557358 CD109Q6YHK3 1445 aa22.28■■□□□ 1.16
VPS33B-206ENST00000557358 CFAP43Q8NDM7 1665 aa22.26■■□□□ 1.15
VPS33B-206ENST00000557358 CDK11AQ9UQ88 783 aaPredicted RBP22.25■■□□□ 1.15
VPS33B-206ENST00000557358 HECW1Q76N89 1606 aa22.24■■□□□ 1.15
VPS33B-206ENST00000557358 CLIP1P30622 1438 aa22.23■■□□□ 1.15
VPS33B-206ENST00000557358 PPRC1Q5VV67 1664 aaKnown RBP22.21■■□□□ 1.15
VPS33B-206ENST00000557358 MAGI3Q5TCQ9 1506 aa22.2■■□□□ 1.14
VPS33B-206ENST00000557358 ABCA9Q8IUA7 1624 aa22.16■■□□□ 1.14
VPS33B-206ENST00000557358 CDK13Q14004 1512 aaKnown RBP22.14■■□□□ 1.13
VPS33B-206ENST00000557358 PHLDB1Q86UU1 1377 aa22.12■■□□□ 1.13
VPS33B-206ENST00000557358 CASKIN1Q8WXD9 1431 aa22.12■■□□□ 1.13
VPS33B-206ENST00000557358 CCDC18Q5T9S5 1454 aa22.11■■□□□ 1.13
VPS33B-206ENST00000557358 CEP162Q5TB80 1403 aa22.08■■□□□ 1.13
VPS33B-206ENST00000557358 FYCO1Q9BQS8 1478 aa22.08■■□□□ 1.12
VPS33B-206ENST00000557358 PCF11O94913 1555 aaKnown RBP22.07■■□□□ 1.12
VPS33B-206ENST00000557358 AEBP2Q6ZN18 517 aaPredicted RBP22.05■■□□□ 1.12
VPS33B-206ENST00000557358 NEO1Q92859 1461 aa22.04■■□□□ 1.12
VPS33B-206ENST00000557358 LOC105371045A0A1W2PR82 267 aa22.03■■□□□ 1.12
VPS33B-206ENST00000557358 TROQ12816 1431 aaPredicted RBP22.03■■□□□ 1.12
VPS33B-206ENST00000557358 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.02■■□□□ 1.12
VPS33B-206ENST00000557358 CFAP74Q9C0B2 1584 aa22.01■■□□□ 1.11
VPS33B-206ENST00000557358 KIF14Q15058 1648 aa22.01■■□□□ 1.11
VPS33B-206ENST00000557358 COL17A1Q9UMD9 1497 aaPredicted RBP22.01■■□□□ 1.11
VPS33B-206ENST00000557358 ARAP3Q8WWN8 1544 aa22.01■■□□□ 1.11
VPS33B-206ENST00000557358 FANCAO15360 1455 aa21.97■■□□□ 1.11
VPS33B-206ENST00000557358 TTC37Q6PGP7 1564 aa21.97■■□□□ 1.11
VPS33B-206ENST00000557358 LRRIQ1Q96JM4 1722 aa21.96■■□□□ 1.11
VPS33B-206ENST00000557358 EFCAB2Q5VUJ9 269 aa21.94■■□□□ 1.1
VPS33B-206ENST00000557358 PLCH2O75038 1416 aa21.94■■□□□ 1.1
VPS33B-206ENST00000557358 MYO5CQ9NQX4 1742 aa21.94■■□□□ 1.1
VPS33B-206ENST00000557358 AKNAQ7Z591 1439 aa21.93■■□□□ 1.1
VPS33B-206ENST00000557358 DENND4BO75064 1496 aaPredicted RBP21.9■■□□□ 1.1
VPS33B-206ENST00000557358 MTUS2Q5JR59 1369 aa21.9■■□□□ 1.1
VPS33B-206ENST00000557358 RAPGEF3O95398 923 aa21.89■■□□□ 1.09
VPS33B-206ENST00000557358 ARHGAP5Q13017 1502 aa21.87■■□□□ 1.09
VPS33B-206ENST00000557358 ADGRL1O94910 1474 aa21.86■■□□□ 1.09
VPS33B-206ENST00000557358 VPS8Q8N3P4 1428 aa21.83■■□□□ 1.09
VPS33B-206ENST00000557358 SCAPERQ9BY12 1400 aa21.82■■□□□ 1.08
VPS33B-206ENST00000557358 APLP2Q06481 763 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms