RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CLASP1Q7Z460 1538 aa22.93■■□□□ 1.26
VIPAS39-208ENST00000556412 KIAA0586Q9BVV6 1533 aa22.91■■□□□ 1.26
VIPAS39-208ENST00000556412 RANGAP1P46060 587 aaPredicted RBP22.86■■□□□ 1.25
VIPAS39-208ENST00000556412 JPH4Q96JJ6 628 aa22.86■■□□□ 1.25
VIPAS39-208ENST00000556412 DNAJC5Q9H3Z4 198 aa22.86■■□□□ 1.25
VIPAS39-208ENST00000556412 LOC105371045A0A1W2PR82 267 aa22.84■■□□□ 1.25
VIPAS39-208ENST00000556412 IQGAP2Q13576 1575 aa22.83■■□□□ 1.25
VIPAS39-208ENST00000556412 PRG4Q92954 1404 aaPredicted RBP22.79■■□□□ 1.24
VIPAS39-208ENST00000556412 CTTNBP2Q8WZ74 1663 aa22.77■■□□□ 1.24
VIPAS39-208ENST00000556412 ARHGEF11O15085 1522 aa22.74■■□□□ 1.23
VIPAS39-208ENST00000556412 SHROOM2Q13796 1616 aa22.73■■□□□ 1.23
VIPAS39-208ENST00000556412 TNIKQ9UKE5 1360 aa22.71■■□□□ 1.23
VIPAS39-208ENST00000556412 TTBK1Q5TCY1 1321 aaPredicted RBP22.7■■□□□ 1.22
VIPAS39-208ENST00000556412 ERCC6L2Q5T890 1561 aa22.7■■□□□ 1.22
VIPAS39-208ENST00000556412 UGGT2Q9NYU1 1516 aa22.7■■□□□ 1.22
VIPAS39-208ENST00000556412 CARMIL2Q6F5E8 1435 aa22.7■■□□□ 1.22
VIPAS39-208ENST00000556412 P3H3Q8IVL6 736 aa22.68■■□□□ 1.22
VIPAS39-208ENST00000556412 RIMBP3CA6NJZ7 1639 aa22.66■■□□□ 1.22
VIPAS39-208ENST00000556412 RIMBP3BA6NNM3 1639 aa22.66■■□□□ 1.22
VIPAS39-208ENST00000556412 RIMBP3Q9UFD9 1639 aa22.66■■□□□ 1.22
VIPAS39-208ENST00000556412 DISP1Q96F81 1524 aa22.65■■□□□ 1.22
VIPAS39-208ENST00000556412 CYB5RLQ6IPT4 315 aa22.61■■□□□ 1.21
VIPAS39-208ENST00000556412 KIAA0556O60303 1618 aa22.6■■□□□ 1.21
VIPAS39-208ENST00000556412 ARAP1Q96P48 1450 aa22.59■■□□□ 1.21
VIPAS39-208ENST00000556412 CLIP1P30622 1438 aa22.57■■□□□ 1.2
VIPAS39-208ENST00000556412 PTPRGP23470 1445 aa22.57■■□□□ 1.2
VIPAS39-208ENST00000556412 FHOD3Q2V2M9 1422 aa22.56■■□□□ 1.2
VIPAS39-208ENST00000556412 CEP162Q5TB80 1403 aa22.56■■□□□ 1.2
VIPAS39-208ENST00000556412 SAMD9Q5K651 1589 aa22.55■■□□□ 1.2
VIPAS39-208ENST00000556412 EFCAB5A4FU69 1503 aa22.55■■□□□ 1.2
VIPAS39-208ENST00000556412 ARHGAP35Q9NRY4 1499 aa22.54■■□□□ 1.2
VIPAS39-208ENST00000556412 PLB1Q6P1J6 1458 aa22.41■■□□□ 1.18
VIPAS39-208ENST00000556412 UACAQ9BZF9 1416 aa22.4■■□□□ 1.18
VIPAS39-208ENST00000556412 FMN1Q68DA7 1419 aa22.38■■□□□ 1.17
VIPAS39-208ENST00000556412 ATP1B4Q9UN42 357 aaPredicted RBP22.38■■□□□ 1.17
VIPAS39-208ENST00000556412 ARID3CA6NKF2 412 aa22.37■■□□□ 1.17
VIPAS39-208ENST00000556412 NPM1P06748 294 aaKnown RBP eCLIP22.33■■□□□ 1.16
VIPAS39-208ENST00000556412 ABCC2Q92887 1545 aa22.32■■□□□ 1.16
VIPAS39-208ENST00000556412 ABCA8O94911 1581 aa22.32■■□□□ 1.16
VIPAS39-208ENST00000556412 ADCY10Q96PN6 1610 aa22.31■■□□□ 1.16
VIPAS39-208ENST00000556412 UHRF1BP1LA0JNW5 1464 aa22.3■■□□□ 1.16
VIPAS39-208ENST00000556412 RAPGEF6Q8TEU7 1601 aa22.28■■□□□ 1.16
VIPAS39-208ENST00000556412 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.28■■□□□ 1.16
VIPAS39-208ENST00000556412 HNRNPUL2Q1KMD3 747 aaKnown RBP22.28■■□□□ 1.16
VIPAS39-208ENST00000556412 NUP153P49790 1475 aaKnown RBP22.24■■□□□ 1.15
VIPAS39-208ENST00000556412 VPS8Q8N3P4 1428 aa22.24■■□□□ 1.15
VIPAS39-208ENST00000556412 CASKIN1Q8WXD9 1431 aa22.23■■□□□ 1.15
VIPAS39-208ENST00000556412 PCF11O94913 1555 aaKnown RBP22.23■■□□□ 1.15
VIPAS39-208ENST00000556412 KDM5BQ9UGL1 1544 aa22.21■■□□□ 1.15
VIPAS39-208ENST00000556412 FYCO1Q9BQS8 1478 aa22.2■■□□□ 1.14
VIPAS39-208ENST00000556412 HECW1Q76N89 1606 aa22.19■■□□□ 1.14
VIPAS39-208ENST00000556412 ATP10BO94823 1461 aa22.19■■□□□ 1.14
VIPAS39-208ENST00000556412 CDK13Q14004 1512 aaKnown RBP22.16■■□□□ 1.14
VIPAS39-208ENST00000556412 ZCCHC11Q5TAX3 1644 aaKnown RBP22.15■■□□□ 1.14
VIPAS39-208ENST00000556412 EPRSP07814 1512 aaKnown RBP22.15■■□□□ 1.14
VIPAS39-208ENST00000556412 ASXL2Q76L83 1435 aa22.12■■□□□ 1.13
VIPAS39-208ENST00000556412 CCDC18Q5T9S5 1454 aa22.1■■□□□ 1.13
VIPAS39-208ENST00000556412 PLEKHD1A6NEE1 506 aa22.09■■□□□ 1.13
VIPAS39-208ENST00000556412 MAPKBP1O60336 1514 aa22.09■■□□□ 1.13
VIPAS39-208ENST00000556412 APLP2Q06481 763 aa22.08■■□□□ 1.13
VIPAS39-208ENST00000556412 CDK11AQ9UQ88 783 aaPredicted RBP22.08■■□□□ 1.13
VIPAS39-208ENST00000556412 KCNH8Q96L42 1107 aa22.08■■□□□ 1.12
VIPAS39-208ENST00000556412 TRHP20396 242 aaPredicted RBP22.07■■□□□ 1.12
VIPAS39-208ENST00000556412 WDR7Q9Y4E6 1490 aa22.05■■□□□ 1.12
VIPAS39-208ENST00000556412 LRRIQ1Q96JM4 1722 aa22.01■■□□□ 1.11
VIPAS39-208ENST00000556412 FAM69CQ0P6D2 419 aa22.01■■□□□ 1.11
VIPAS39-208ENST00000556412 MTUS2Q5JR59 1369 aa21.99■■□□□ 1.11
VIPAS39-208ENST00000556412 ABCC10Q5T3U5 1492 aa21.98■■□□□ 1.11
VIPAS39-208ENST00000556412 TIAM1Q13009 1591 aa21.97■■□□□ 1.11
VIPAS39-208ENST00000556412 TROQ12816 1431 aaPredicted RBP21.97■■□□□ 1.11
VIPAS39-208ENST00000556412 MAGI3Q5TCQ9 1506 aa21.95■■□□□ 1.1
VIPAS39-208ENST00000556412 KANK4Q5T7N3 995 aaPredicted RBP21.94■■□□□ 1.1
VIPAS39-208ENST00000556412 DIP2BQ9P265 1576 aa21.92■■□□□ 1.1
VIPAS39-208ENST00000556412 CFAP43Q8NDM7 1665 aa21.92■■□□□ 1.1
VIPAS39-208ENST00000556412 MAP3K1Q13233 1512 aa21.91■■□□□ 1.1
VIPAS39-208ENST00000556412 PPARGC1BQ86YN6 1023 aaKnown RBP21.9■■□□□ 1.1
VIPAS39-208ENST00000556412 LRRC9Q6ZRR7 1453 aa21.89■■□□□ 1.1
VIPAS39-208ENST00000556412 EHBP1L1Q8N3D4 1523 aa21.88■■□□□ 1.09
VIPAS39-208ENST00000556412 KIF14Q15058 1648 aa21.87■■□□□ 1.09
VIPAS39-208ENST00000556412 GLI2P10070 1586 aa21.84■■□□□ 1.09
VIPAS39-208ENST00000556412 CD109Q6YHK3 1445 aa21.84■■□□□ 1.09
VIPAS39-208ENST00000556412 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.83■■□□□ 1.09
VIPAS39-208ENST00000556412 TTC37Q6PGP7 1564 aa21.8■■□□□ 1.08
VIPAS39-208ENST00000556412 ABCA9Q8IUA7 1624 aa21.79■■□□□ 1.08
VIPAS39-208ENST00000556412 NCOA2Q15596 1464 aa21.79■■□□□ 1.08
VIPAS39-208ENST00000556412 KIF13AQ9H1H9 1805 aa21.78■■□□□ 1.08
VIPAS39-208ENST00000556412 CCNB3Q8WWL7 1395 aa21.78■■□□□ 1.08
VIPAS39-208ENST00000556412 MAP3K4Q9Y6R4 1608 aa21.75■■□□□ 1.07
VIPAS39-208ENST00000556412 SUPT6HQ7KZ85 1726 aaKnown RBP21.74■■□□□ 1.07
VIPAS39-208ENST00000556412 PLCH2O75038 1416 aa21.73■■□□□ 1.07
VIPAS39-208ENST00000556412 CFDP1Q9UEE9 299 aaPredicted RBP21.71■■□□□ 1.07
VIPAS39-208ENST00000556412 ZNF777Q9ULD5 760 aaPredicted RBP21.71■■□□□ 1.07
VIPAS39-208ENST00000556412 GPATCH8Q9UKJ3 1502 aaKnown RBP21.71■■□□□ 1.07
VIPAS39-208ENST00000556412 ARHGAP5Q13017 1502 aa21.7■■□□□ 1.06
VIPAS39-208ENST00000556412 TEX14Q8IWB6 1497 aa21.7■■□□□ 1.06
VIPAS39-208ENST00000556412 EFCAB2Q5VUJ9 269 aa21.69■■□□□ 1.06
VIPAS39-208ENST00000556412 PHLDB1Q86UU1 1377 aa21.68■■□□□ 1.06
VIPAS39-208ENST00000556412 TSPOAP1O95153 1857 aa21.68■■□□□ 1.06
VIPAS39-208ENST00000556412 FANCAO15360 1455 aa21.68■■□□□ 1.06
VIPAS39-208ENST00000556412 MYO5CQ9NQX4 1742 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms