RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 NUP160Q12769 1436 aa19.82■□□□□ 0.76
SLIRP-205ENST00000556310 TRIM41Q8WV44 630 aa19.76■□□□□ 0.75
SLIRP-205ENST00000556310 ARAP1Q96P48 1450 aa19.75■□□□□ 0.75
SLIRP-205ENST00000556310 IGF1RP08069 1367 aa19.75■□□□□ 0.75
SLIRP-205ENST00000556310 SHROOM2Q13796 1616 aa19.73■□□□□ 0.75
SLIRP-205ENST00000556310 RUSC2Q8N2Y8 1516 aa19.71■□□□□ 0.75
SLIRP-205ENST00000556310 MSH5O43196 834 aa19.71■□□□□ 0.75
SLIRP-205ENST00000556310 CARMIL1Q5VZK9 1371 aa19.64■□□□□ 0.73
SLIRP-205ENST00000556310 ERCC6L2Q5T890 1561 aa19.63■□□□□ 0.73
SLIRP-205ENST00000556310 CYB5RLQ6IPT4 315 aa19.63■□□□□ 0.73
SLIRP-205ENST00000556310 KIAA0586Q9BVV6 1533 aa19.59■□□□□ 0.73
SLIRP-205ENST00000556310 RAPGEF2Q9Y4G8 1499 aa19.55■□□□□ 0.72
SLIRP-205ENST00000556310 PRG4Q92954 1404 aaPredicted RBP19.54■□□□□ 0.72
SLIRP-205ENST00000556310 JPH4Q96JJ6 628 aa19.52■□□□□ 0.72
SLIRP-205ENST00000556310 IQGAP2Q13576 1575 aa19.51■□□□□ 0.71
SLIRP-205ENST00000556310 PRXQ9BXM0 1461 aa19.47■□□□□ 0.71
SLIRP-205ENST00000556310 CTTNBP2Q8WZ74 1663 aa19.46■□□□□ 0.71
SLIRP-205ENST00000556310 EEA1Q15075 1411 aa19.45■□□□□ 0.7
SLIRP-205ENST00000556310 PPP4R3CPQ6ZMV5 832 aa19.44■□□□□ 0.7
SLIRP-205ENST00000556310 UGGT2Q9NYU1 1516 aa19.39■□□□□ 0.69
SLIRP-205ENST00000556310 CARMIL2Q6F5E8 1435 aa19.37■□□□□ 0.69
SLIRP-205ENST00000556310 DISP1Q96F81 1524 aa19.35■□□□□ 0.69
SLIRP-205ENST00000556310 CSRNP3Q8WYN3 585 aa19.34■□□□□ 0.69
SLIRP-205ENST00000556310 KIAA0556O60303 1618 aa19.33■□□□□ 0.68
SLIRP-205ENST00000556310 ADCY10Q96PN6 1610 aa19.33■□□□□ 0.68
SLIRP-205ENST00000556310 TNIKQ9UKE5 1360 aa19.31■□□□□ 0.68
SLIRP-205ENST00000556310 KIF21BO75037 1637 aa19.29■□□□□ 0.68
SLIRP-205ENST00000556310 PTPRGP23470 1445 aa19.28■□□□□ 0.68
SLIRP-205ENST00000556310 KCNA4P22459 653 aa19.28■□□□□ 0.68
SLIRP-205ENST00000556310 TRHP20396 242 aaPredicted RBP19.26■□□□□ 0.67
SLIRP-205ENST00000556310 GOLGA3Q08378 1498 aa19.26■□□□□ 0.67
SLIRP-205ENST00000556310 MAPKBP1O60336 1514 aa19.23■□□□□ 0.67
SLIRP-205ENST00000556310 FAM9AQ8IZU1 332 aaPredicted RBP19.22■□□□□ 0.67
SLIRP-205ENST00000556310 UHRF1BP1LA0JNW5 1464 aa19.2■□□□□ 0.66
SLIRP-205ENST00000556310 ABCC2Q92887 1545 aa19.2■□□□□ 0.66
SLIRP-205ENST00000556310 KIF13AQ9H1H9 1805 aa19.18■□□□□ 0.66
SLIRP-205ENST00000556310 SAMD9Q5K651 1589 aa19.18■□□□□ 0.66
SLIRP-205ENST00000556310 UACAQ9BZF9 1416 aa19.17■□□□□ 0.66
SLIRP-205ENST00000556310 TTBK1Q5TCY1 1321 aaPredicted RBP19.17■□□□□ 0.66
SLIRP-205ENST00000556310 NPM1P06748 294 aaKnown RBP eCLIP19.16■□□□□ 0.66
SLIRP-205ENST00000556310 DIP2BQ9P265 1576 aa19.12■□□□□ 0.65
SLIRP-205ENST00000556310 ABCA8O94911 1581 aa19.11■□□□□ 0.65
SLIRP-205ENST00000556310 ABCC10Q5T3U5 1492 aa19.11■□□□□ 0.65
SLIRP-205ENST00000556310 KDM5BQ9UGL1 1544 aa19.1■□□□□ 0.65
SLIRP-205ENST00000556310 SCAF1Q9H7N4 1312 aaKnown RBP19.1■□□□□ 0.65
SLIRP-205ENST00000556310 ZCCHC11Q5TAX3 1644 aaKnown RBP19.1■□□□□ 0.65
SLIRP-205ENST00000556310 PLB1Q6P1J6 1458 aa19.09■□□□□ 0.65
SLIRP-205ENST00000556310 EFCAB5A4FU69 1503 aa19.08■□□□□ 0.64
SLIRP-205ENST00000556310 ASXL2Q76L83 1435 aa19.04■□□□□ 0.64
SLIRP-205ENST00000556310 NCBP3Q53F19 620 aaKnown RBP19.01■□□□□ 0.63
SLIRP-205ENST00000556310 RAPGEF6Q8TEU7 1601 aa19■□□□□ 0.63
SLIRP-205ENST00000556310 P3H3Q8IVL6 736 aa19■□□□□ 0.63
SLIRP-205ENST00000556310 FHOD3Q2V2M9 1422 aa19■□□□□ 0.63
SLIRP-205ENST00000556310 GLI2P10070 1586 aa18.99■□□□□ 0.63
SLIRP-205ENST00000556310 FAM69CQ0P6D2 419 aa18.99■□□□□ 0.63
SLIRP-205ENST00000556310 UBTFP17480 764 aaKnown RBP18.98■□□□□ 0.63
SLIRP-205ENST00000556310 EHMT2Q96KQ7 1210 aa18.96■□□□□ 0.63
SLIRP-205ENST00000556310 WDR7Q9Y4E6 1490 aa18.96■□□□□ 0.63
SLIRP-205ENST00000556310 RANGAP1P46060 587 aaPredicted RBP18.95■□□□□ 0.62
SLIRP-205ENST00000556310 EPRSP07814 1512 aaKnown RBP18.95■□□□□ 0.62
SLIRP-205ENST00000556310 TSPOAP1O95153 1857 aa18.94■□□□□ 0.62
SLIRP-205ENST00000556310 MAP3K4Q9Y6R4 1608 aa18.92■□□□□ 0.62
SLIRP-205ENST00000556310 ARHGAP35Q9NRY4 1499 aa18.91■□□□□ 0.62
SLIRP-205ENST00000556310 PPRC1Q5VV67 1664 aaKnown RBP18.9■□□□□ 0.62
SLIRP-205ENST00000556310 ATP10BO94823 1461 aa18.9■□□□□ 0.62
SLIRP-205ENST00000556310 NUP153P49790 1475 aaKnown RBP18.9■□□□□ 0.62
SLIRP-205ENST00000556310 MAPK8IP2Q13387 824 aaPredicted RBP18.88■□□□□ 0.61
SLIRP-205ENST00000556310 CFAP43Q8NDM7 1665 aa18.86■□□□□ 0.61
SLIRP-205ENST00000556310 FMN1Q68DA7 1419 aa18.85■□□□□ 0.61
SLIRP-205ENST00000556310 KDM6BO15054 1643 aa18.83■□□□□ 0.61
SLIRP-205ENST00000556310 CNKSR2Q8WXI2 1034 aa18.83■□□□□ 0.6
SLIRP-205ENST00000556310 HECW1Q76N89 1606 aa18.82■□□□□ 0.6
SLIRP-205ENST00000556310 ARID3CA6NKF2 412 aa18.82■□□□□ 0.6
SLIRP-205ENST00000556310 TEX14Q8IWB6 1497 aa18.8■□□□□ 0.6
SLIRP-205ENST00000556310 ABCA9Q8IUA7 1624 aa18.78■□□□□ 0.6
SLIRP-205ENST00000556310 CDK13Q14004 1512 aaKnown RBP18.76■□□□□ 0.59
SLIRP-205ENST00000556310 MAGI3Q5TCQ9 1506 aa18.76■□□□□ 0.59
SLIRP-205ENST00000556310 CLIP1P30622 1438 aa18.75■□□□□ 0.59
SLIRP-205ENST00000556310 CD109Q6YHK3 1445 aa18.74■□□□□ 0.59
SLIRP-205ENST00000556310 PCF11O94913 1555 aaKnown RBP18.74■□□□□ 0.59
SLIRP-205ENST00000556310 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.74■□□□□ 0.59
SLIRP-205ENST00000556310 HNRNPUL2Q1KMD3 747 aaKnown RBP18.74■□□□□ 0.59
SLIRP-205ENST00000556310 KCNH8Q96L42 1107 aa18.74■□□□□ 0.59
SLIRP-205ENST00000556310 LRRIQ1Q96JM4 1722 aa18.73■□□□□ 0.59
SLIRP-205ENST00000556310 NPM3O75607 178 aaKnown RBP18.72■□□□□ 0.59
SLIRP-205ENST00000556310 CASKIN1Q8WXD9 1431 aa18.69■□□□□ 0.58
SLIRP-205ENST00000556310 FYCO1Q9BQS8 1478 aa18.68■□□□□ 0.58
SLIRP-205ENST00000556310 PLEKHD1A6NEE1 506 aa18.67■□□□□ 0.58
SLIRP-205ENST00000556310 CEP162Q5TB80 1403 aa18.66■□□□□ 0.58
SLIRP-205ENST00000556310 CCDC18Q5T9S5 1454 aa18.65■□□□□ 0.58
SLIRP-205ENST00000556310 COL17A1Q9UMD9 1497 aaPredicted RBP18.65■□□□□ 0.58
SLIRP-205ENST00000556310 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.65■□□□□ 0.58
SLIRP-205ENST00000556310 TTC37Q6PGP7 1564 aa18.65■□□□□ 0.58
SLIRP-205ENST00000556310 ATP1B4Q9UN42 357 aaPredicted RBP18.64■□□□□ 0.57
SLIRP-205ENST00000556310 KIF14Q15058 1648 aa18.62■□□□□ 0.57
SLIRP-205ENST00000556310 CFAP74Q9C0B2 1584 aa18.61■□□□□ 0.57
SLIRP-205ENST00000556310 NEO1Q92859 1461 aa18.61■□□□□ 0.57
SLIRP-205ENST00000556310 TROQ12816 1431 aaPredicted RBP18.6■□□□□ 0.57
SLIRP-205ENST00000556310 ARAP3Q8WWN8 1544 aa18.59■□□□□ 0.57
SLIRP-205ENST00000556310 PHLDB1Q86UU1 1377 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms