RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 CHMP7Q8WUX9 453 aaPredicted RBP23.08■■□□□ 1.28
VPS33B-205ENST00000556096 SYNJ2O15056 1496 aa23.05■■□□□ 1.28
VPS33B-205ENST00000556096 FHAD1B1AJZ9 1412 aa23.03■■□□□ 1.28
VPS33B-205ENST00000556096 VPS8Q8N3P4 1428 aa22.98■■□□□ 1.27
VPS33B-205ENST00000556096 GRIN2AQ12879 1464 aa22.96■■□□□ 1.27
VPS33B-205ENST00000556096 OSCARQ8IYS5 282 aa22.96■■□□□ 1.27
VPS33B-205ENST00000556096 CTTNBP2Q8WZ74 1663 aa22.95■■□□□ 1.26
VPS33B-205ENST00000556096 RANGAP1P46060 587 aaPredicted RBP22.91■■□□□ 1.26
VPS33B-205ENST00000556096 ARAP1Q96P48 1450 aa22.9■■□□□ 1.26
VPS33B-205ENST00000556096 CEP170Q5SW79 1584 aa22.88■■□□□ 1.25
VPS33B-205ENST00000556096 PPARGC1BQ86YN6 1023 aaKnown RBP22.87■■□□□ 1.25
VPS33B-205ENST00000556096 ARHGAP35Q9NRY4 1499 aa22.87■■□□□ 1.25
VPS33B-205ENST00000556096 NUP160Q12769 1436 aa22.81■■□□□ 1.24
VPS33B-205ENST00000556096 CLASP1Q7Z460 1538 aa22.79■■□□□ 1.24
VPS33B-205ENST00000556096 APLP2Q06481 763 aa22.76■■□□□ 1.23
VPS33B-205ENST00000556096 IQGAP2Q13576 1575 aa22.76■■□□□ 1.23
VPS33B-205ENST00000556096 EFCAB5A4FU69 1503 aa22.72■■□□□ 1.23
VPS33B-205ENST00000556096 KIAA0586Q9BVV6 1533 aa22.71■■□□□ 1.23
VPS33B-205ENST00000556096 HRCP23327 699 aa22.65■■□□□ 1.22
VPS33B-205ENST00000556096 SAMD9Q5K651 1589 aa22.65■■□□□ 1.22
VPS33B-205ENST00000556096 JPH4Q96JJ6 628 aa22.63■■□□□ 1.21
VPS33B-205ENST00000556096 ERCC6L2Q5T890 1561 aa22.63■■□□□ 1.21
VPS33B-205ENST00000556096 TTBK1Q5TCY1 1321 aaPredicted RBP22.62■■□□□ 1.21
VPS33B-205ENST00000556096 UGGT2Q9NYU1 1516 aa22.62■■□□□ 1.21
VPS33B-205ENST00000556096 ARHGEF11O15085 1522 aa22.61■■□□□ 1.21
VPS33B-205ENST00000556096 RIMBP3CA6NJZ7 1639 aa22.61■■□□□ 1.21
VPS33B-205ENST00000556096 RIMBP3BA6NNM3 1639 aa22.61■■□□□ 1.21
VPS33B-205ENST00000556096 SHROOM2Q13796 1616 aa22.61■■□□□ 1.21
VPS33B-205ENST00000556096 RIMBP3Q9UFD9 1639 aa22.61■■□□□ 1.21
VPS33B-205ENST00000556096 MAP3K1Q13233 1512 aa22.59■■□□□ 1.21
VPS33B-205ENST00000556096 PRG4Q92954 1404 aaPredicted RBP22.58■■□□□ 1.2
VPS33B-205ENST00000556096 FHOD3Q2V2M9 1422 aa22.56■■□□□ 1.2
VPS33B-205ENST00000556096 P3H3Q8IVL6 736 aa22.56■■□□□ 1.2
VPS33B-205ENST00000556096 KIAA0556O60303 1618 aa22.54■■□□□ 1.2
VPS33B-205ENST00000556096 DISP1Q96F81 1524 aa22.53■■□□□ 1.2
VPS33B-205ENST00000556096 FMN1Q68DA7 1419 aa22.52■■□□□ 1.2
VPS33B-205ENST00000556096 KANK4Q5T7N3 995 aaPredicted RBP22.51■■□□□ 1.19
VPS33B-205ENST00000556096 CASKIN1Q8WXD9 1431 aa22.5■■□□□ 1.19
VPS33B-205ENST00000556096 FYCO1Q9BQS8 1478 aa22.5■■□□□ 1.19
VPS33B-205ENST00000556096 TIAM1Q13009 1591 aa22.49■■□□□ 1.19
VPS33B-205ENST00000556096 PCF11O94913 1555 aaKnown RBP22.49■■□□□ 1.19
VPS33B-205ENST00000556096 CYB5RLQ6IPT4 315 aa22.45■■□□□ 1.19
VPS33B-205ENST00000556096 CFAP43Q8NDM7 1665 aa22.42■■□□□ 1.18
VPS33B-205ENST00000556096 CARMIL2Q6F5E8 1435 aa22.42■■□□□ 1.18
VPS33B-205ENST00000556096 LRRC9Q6ZRR7 1453 aa22.4■■□□□ 1.18
VPS33B-205ENST00000556096 ZEB1P37275 1124 aaPredicted RBP22.34■■□□□ 1.17
VPS33B-205ENST00000556096 RRBP1Q9P2E9 1410 aaKnown RBP22.34■■□□□ 1.17
VPS33B-205ENST00000556096 ATP1B4Q9UN42 357 aaPredicted RBP22.34■■□□□ 1.17
VPS33B-205ENST00000556096 PTPRGP23470 1445 aa22.33■■□□□ 1.16
VPS33B-205ENST00000556096 LRRIQ1Q96JM4 1722 aa22.32■■□□□ 1.16
VPS33B-205ENST00000556096 RAPGEF6Q8TEU7 1601 aa22.28■■□□□ 1.16
VPS33B-205ENST00000556096 HECW1Q76N89 1606 aa22.27■■□□□ 1.16
VPS33B-205ENST00000556096 CCDC18Q5T9S5 1454 aa22.24■■□□□ 1.15
VPS33B-205ENST00000556096 CCNB3Q8WWL7 1395 aa22.24■■□□□ 1.15
VPS33B-205ENST00000556096 PLB1Q6P1J6 1458 aa22.23■■□□□ 1.15
VPS33B-205ENST00000556096 HNRNPUL2Q1KMD3 747 aaKnown RBP22.23■■□□□ 1.15
VPS33B-205ENST00000556096 ABCA8O94911 1581 aa22.22■■□□□ 1.15
VPS33B-205ENST00000556096 ADCY10Q96PN6 1610 aa22.2■■□□□ 1.14
VPS33B-205ENST00000556096 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.2■■□□□ 1.14
VPS33B-205ENST00000556096 PHLDB1Q86UU1 1377 aa22.19■■□□□ 1.14
VPS33B-205ENST00000556096 ARID3CA6NKF2 412 aa22.19■■□□□ 1.14
VPS33B-205ENST00000556096 NUP153P49790 1475 aaKnown RBP22.18■■□□□ 1.14
VPS33B-205ENST00000556096 MTUS2Q5JR59 1369 aa22.18■■□□□ 1.14
VPS33B-205ENST00000556096 UACAQ9BZF9 1416 aa22.17■■□□□ 1.14
VPS33B-205ENST00000556096 CCER1Q8TC90 406 aaPredicted RBP22.17■■□□□ 1.14
VPS33B-205ENST00000556096 EPRSP07814 1512 aaKnown RBP22.16■■□□□ 1.14
VPS33B-205ENST00000556096 CDK13Q14004 1512 aaKnown RBP22.15■■□□□ 1.14
VPS33B-205ENST00000556096 EHBP1L1Q8N3D4 1523 aa22.15■■□□□ 1.14
VPS33B-205ENST00000556096 ABCC2Q92887 1545 aa22.12■■□□□ 1.13
VPS33B-205ENST00000556096 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.1■■□□□ 1.13
VPS33B-205ENST00000556096 SUPT6HQ7KZ85 1726 aaKnown RBP22.09■■□□□ 1.13
VPS33B-205ENST00000556096 UHRF1BP1LA0JNW5 1464 aa22.07■■□□□ 1.12
VPS33B-205ENST00000556096 MAGI3Q5TCQ9 1506 aa22.07■■□□□ 1.12
VPS33B-205ENST00000556096 NCOA2Q15596 1464 aa22.07■■□□□ 1.12
VPS33B-205ENST00000556096 NPM1P06748 294 aaKnown RBP eCLIP22.06■■□□□ 1.12
VPS33B-205ENST00000556096 ZCCHC11Q5TAX3 1644 aaKnown RBP22.03■■□□□ 1.12
VPS33B-205ENST00000556096 ATP10BO94823 1461 aa22.03■■□□□ 1.12
VPS33B-205ENST00000556096 FGD6Q6ZV73 1430 aa22.03■■□□□ 1.12
VPS33B-205ENST00000556096 MYOM3Q5VTT5 1437 aa22.01■■□□□ 1.11
VPS33B-205ENST00000556096 KDM5BQ9UGL1 1544 aa22■■□□□ 1.11
VPS33B-205ENST00000556096 FAM50AQ14320 339 aaKnown RBP21.99■■□□□ 1.11
VPS33B-205ENST00000556096 CDK11AQ9UQ88 783 aaPredicted RBP21.99■■□□□ 1.11
VPS33B-205ENST00000556096 ITGAEP38570 1179 aa21.94■■□□□ 1.1
VPS33B-205ENST00000556096 ASXL2Q76L83 1435 aa21.93■■□□□ 1.1
VPS33B-205ENST00000556096 TRHP20396 242 aaPredicted RBP21.92■■□□□ 1.1
VPS33B-205ENST00000556096 TROQ12816 1431 aaPredicted RBP21.91■■□□□ 1.1
VPS33B-205ENST00000556096 MAPKBP1O60336 1514 aa21.91■■□□□ 1.1
VPS33B-205ENST00000556096 MIA2Q96PC5 1412 aa21.9■■□□□ 1.1
VPS33B-205ENST00000556096 KIF14Q15058 1648 aa21.89■■□□□ 1.1
VPS33B-205ENST00000556096 TCOF1Q13428 1488 aaKnown RBP21.89■■□□□ 1.09
VPS33B-205ENST00000556096 PTPN23Q9H3S7 1636 aa21.88■■□□□ 1.09
VPS33B-205ENST00000556096 KCNH8Q96L42 1107 aa21.88■■□□□ 1.09
VPS33B-205ENST00000556096 SETD5Q9C0A6 1442 aa21.88■■□□□ 1.09
VPS33B-205ENST00000556096 CLSPNQ9HAW4 1339 aa21.87■■□□□ 1.09
VPS33B-205ENST00000556096 PLEKHD1A6NEE1 506 aa21.86■■□□□ 1.09
VPS33B-205ENST00000556096 DHX57Q6P158 1386 aaKnown RBP21.85■■□□□ 1.09
VPS33B-205ENST00000556096 WDR7Q9Y4E6 1490 aa21.84■■□□□ 1.09
VPS33B-205ENST00000556096 RAB3GAP2Q9H2M9 1393 aa21.84■■□□□ 1.09
VPS33B-205ENST00000556096 FAM69CQ0P6D2 419 aa21.82■■□□□ 1.08
VPS33B-205ENST00000556096 DIP2BQ9P265 1576 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms