RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 ERCC6L2Q5T890 1561 aa34.92■■■■□ 3.18
CCDC88C-210ENST00000555995 JPH4Q96JJ6 628 aa34.91■■■■□ 3.18
CCDC88C-210ENST00000555995 RAPGEF2Q9Y4G8 1499 aa34.9■■■■□ 3.18
CCDC88C-210ENST00000555995 PRG4Q92954 1404 aaPredicted RBP34.89■■■■□ 3.18
CCDC88C-210ENST00000555995 IQGAP2Q13576 1575 aa34.79■■■■□ 3.16
CCDC88C-210ENST00000555995 EEA1Q15075 1411 aa34.74■■■■□ 3.15
CCDC88C-210ENST00000555995 PRXQ9BXM0 1461 aa34.69■■■■□ 3.14
CCDC88C-210ENST00000555995 CTTNBP2Q8WZ74 1663 aa34.67■■■■□ 3.14
CCDC88C-210ENST00000555995 CARMIL2Q6F5E8 1435 aa34.66■■■■□ 3.14
CCDC88C-210ENST00000555995 UGGT2Q9NYU1 1516 aa34.57■■■■□ 3.12
CCDC88C-210ENST00000555995 CSRNP3Q8WYN3 585 aa34.56■■■■□ 3.12
CCDC88C-210ENST00000555995 TRHP20396 242 aaPredicted RBP34.52■■■■□ 3.12
CCDC88C-210ENST00000555995 TNIKQ9UKE5 1360 aa34.5■■■■□ 3.11
CCDC88C-210ENST00000555995 CHIC1Q5VXU3 224 aa34.5■■■■□ 3.11
CCDC88C-210ENST00000555995 PTPRGP23470 1445 aa34.47■■■■□ 3.11
CCDC88C-210ENST00000555995 DISP1Q96F81 1524 aa34.46■■■■□ 3.11
CCDC88C-210ENST00000555995 KIAA0556O60303 1618 aa34.45■■■■□ 3.11
CCDC88C-210ENST00000555995 GOLGA3Q08378 1498 aa34.43■■■■□ 3.1
CCDC88C-210ENST00000555995 ADCY10Q96PN6 1610 aa34.43■■■■□ 3.1
CCDC88C-210ENST00000555995 NPM1P06748 294 aaKnown RBP eCLIP34.38■■■■□ 3.09
CCDC88C-210ENST00000555995 KIF21BO75037 1637 aa34.36■■■■□ 3.09
CCDC88C-210ENST00000555995 MAPKBP1O60336 1514 aa34.33■■■■□ 3.09
CCDC88C-210ENST00000555995 UHRF1BP1LA0JNW5 1464 aa34.28■■■■□ 3.08
CCDC88C-210ENST00000555995 FAM9AQ8IZU1 332 aaPredicted RBP34.27■■■■□ 3.08
CCDC88C-210ENST00000555995 UACAQ9BZF9 1416 aa34.25■■■■□ 3.07
CCDC88C-210ENST00000555995 TTBK1Q5TCY1 1321 aaPredicted RBP34.24■■■■□ 3.07
CCDC88C-210ENST00000555995 ABCC2Q92887 1545 aa34.24■■■■□ 3.07
CCDC88C-210ENST00000555995 KIF13AQ9H1H9 1805 aa34.18■■■■□ 3.06
CCDC88C-210ENST00000555995 SAMD9Q5K651 1589 aa34.15■■■■□ 3.06
CCDC88C-210ENST00000555995 ABCC10Q5T3U5 1492 aa34.14■■■■□ 3.06
CCDC88C-210ENST00000555995 DIP2BQ9P265 1576 aa34.1■■■■□ 3.05
CCDC88C-210ENST00000555995 KDM5BQ9UGL1 1544 aa34.09■■■■□ 3.05
CCDC88C-210ENST00000555995 PLB1Q6P1J6 1458 aa34.05■■■■□ 3.04
CCDC88C-210ENST00000555995 ABCA8O94911 1581 aa34.05■■■■□ 3.04
CCDC88C-210ENST00000555995 ZCCHC11Q5TAX3 1644 aaKnown RBP34.03■■■■□ 3.04
CCDC88C-210ENST00000555995 EFCAB5A4FU69 1503 aa34.03■■■■□ 3.04
CCDC88C-210ENST00000555995 ASXL2Q76L83 1435 aa33.99■■■■□ 3.03
CCDC88C-210ENST00000555995 FAM69CQ0P6D2 419 aa33.98■■■■□ 3.03
CCDC88C-210ENST00000555995 UBTFP17480 764 aaKnown RBP33.94■■■■□ 3.02
CCDC88C-210ENST00000555995 P3H3Q8IVL6 736 aa33.91■■■■□ 3.02
CCDC88C-210ENST00000555995 GLI2P10070 1586 aa33.9■■■■□ 3.02
CCDC88C-210ENST00000555995 RAPGEF6Q8TEU7 1601 aa33.88■■■■□ 3.01
CCDC88C-210ENST00000555995 WDR7Q9Y4E6 1490 aa33.84■■■■□ 3.01
CCDC88C-210ENST00000555995 FHOD3Q2V2M9 1422 aa33.84■■■■□ 3.01
CCDC88C-210ENST00000555995 RANGAP1P46060 587 aaPredicted RBP33.83■■■■□ 3.01
CCDC88C-210ENST00000555995 EPRSP07814 1512 aaKnown RBP33.81■■■■□ 3
CCDC88C-210ENST00000555995 TSPOAP1O95153 1857 aa33.78■■■■□ 3
CCDC88C-210ENST00000555995 EHMT2Q96KQ7 1210 aa33.77■■■■□ 3
CCDC88C-210ENST00000555995 MAP3K4Q9Y6R4 1608 aa33.73■■■□□ 2.99
CCDC88C-210ENST00000555995 ATP10BO94823 1461 aa33.7■■■□□ 2.99
CCDC88C-210ENST00000555995 FMN1Q68DA7 1419 aa33.68■■■□□ 2.98
CCDC88C-210ENST00000555995 NUP153P49790 1475 aaKnown RBP33.67■■■□□ 2.98
CCDC88C-210ENST00000555995 ARHGAP35Q9NRY4 1499 aa33.67■■■□□ 2.98
CCDC88C-210ENST00000555995 CFAP43Q8NDM7 1665 aa33.66■■■□□ 2.98
CCDC88C-210ENST00000555995 PPRC1Q5VV67 1664 aaKnown RBP33.65■■■□□ 2.98
CCDC88C-210ENST00000555995 TEX14Q8IWB6 1497 aa33.64■■■□□ 2.98
CCDC88C-210ENST00000555995 KDM6BO15054 1643 aa33.64■■■□□ 2.98
CCDC88C-210ENST00000555995 HECW1Q76N89 1606 aa33.58■■■□□ 2.97
CCDC88C-210ENST00000555995 ARID3CA6NKF2 412 aa33.56■■■□□ 2.96
CCDC88C-210ENST00000555995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.55■■■□□ 2.96
CCDC88C-210ENST00000555995 HNRNPUL2Q1KMD3 747 aaKnown RBP33.55■■■□□ 2.96
CCDC88C-210ENST00000555995 KCNH8Q96L42 1107 aa33.52■■■□□ 2.96
CCDC88C-210ENST00000555995 MAGI3Q5TCQ9 1506 aa33.51■■■□□ 2.95
CCDC88C-210ENST00000555995 CD109Q6YHK3 1445 aa33.51■■■□□ 2.95
CCDC88C-210ENST00000555995 ABCA9Q8IUA7 1624 aa33.5■■■□□ 2.95
CCDC88C-210ENST00000555995 PLEKHD1A6NEE1 506 aa33.44■■■□□ 2.94
CCDC88C-210ENST00000555995 CLIP1P30622 1438 aa33.44■■■□□ 2.94
CCDC88C-210ENST00000555995 CDK13Q14004 1512 aaKnown RBP33.39■■■□□ 2.94
CCDC88C-210ENST00000555995 CDK11AQ9UQ88 783 aaPredicted RBP33.34■■■□□ 2.93
CCDC88C-210ENST00000555995 CASKIN1Q8WXD9 1431 aa33.34■■■□□ 2.93
CCDC88C-210ENST00000555995 ATP1B4Q9UN42 357 aaPredicted RBP33.33■■■□□ 2.93
CCDC88C-210ENST00000555995 PCF11O94913 1555 aaKnown RBP33.33■■■□□ 2.93
CCDC88C-210ENST00000555995 CCDC18Q5T9S5 1454 aa33.31■■■□□ 2.92
CCDC88C-210ENST00000555995 PHLDB1Q86UU1 1377 aa33.3■■■□□ 2.92
CCDC88C-210ENST00000555995 FYCO1Q9BQS8 1478 aa33.3■■■□□ 2.92
CCDC88C-210ENST00000555995 LRRIQ1Q96JM4 1722 aa33.26■■■□□ 2.92
CCDC88C-210ENST00000555995 NEO1Q92859 1461 aa33.25■■■□□ 2.91
CCDC88C-210ENST00000555995 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.24■■■□□ 2.91
CCDC88C-210ENST00000555995 CFAP74Q9C0B2 1584 aa33.24■■■□□ 2.91
CCDC88C-210ENST00000555995 CEP162Q5TB80 1403 aa33.23■■■□□ 2.91
CCDC88C-210ENST00000555995 COL17A1Q9UMD9 1497 aaPredicted RBP33.23■■■□□ 2.91
CCDC88C-210ENST00000555995 ARAP3Q8WWN8 1544 aa33.22■■■□□ 2.91
CCDC88C-210ENST00000555995 TTC37Q6PGP7 1564 aa33.21■■■□□ 2.91
CCDC88C-210ENST00000555995 KIF14Q15058 1648 aa33.2■■■□□ 2.91
CCDC88C-210ENST00000555995 TROQ12816 1431 aaPredicted RBP33.19■■■□□ 2.9
CCDC88C-210ENST00000555995 MYO5CQ9NQX4 1742 aa33.12■■■□□ 2.89
CCDC88C-210ENST00000555995 FANCAO15360 1455 aa33.1■■■□□ 2.89
CCDC88C-210ENST00000555995 PLCH2O75038 1416 aa33.04■■■□□ 2.88
CCDC88C-210ENST00000555995 AKNAQ7Z591 1439 aa33.02■■■□□ 2.88
CCDC88C-210ENST00000555995 AEBP2Q6ZN18 517 aaPredicted RBP32.99■■■□□ 2.87
CCDC88C-210ENST00000555995 LOC105371045A0A1W2PR82 267 aa32.98■■■□□ 2.87
CCDC88C-210ENST00000555995 DENND4BO75064 1496 aaPredicted RBP32.98■■■□□ 2.87
CCDC88C-210ENST00000555995 RICTORQ6R327 1708 aa32.95■■■□□ 2.87
CCDC88C-210ENST00000555995 FRMPD1Q5SYB0 1578 aa32.95■■■□□ 2.86
CCDC88C-210ENST00000555995 ADGRL1O94910 1474 aa32.93■■■□□ 2.86
CCDC88C-210ENST00000555995 ARHGAP5Q13017 1502 aa32.92■■■□□ 2.86
CCDC88C-210ENST00000555995 PREX2Q70Z35 1606 aa32.92■■■□□ 2.86
CCDC88C-210ENST00000555995 EFCAB2Q5VUJ9 269 aa32.92■■■□□ 2.86
CCDC88C-210ENST00000555995 VPS8Q8N3P4 1428 aa32.88■■■□□ 2.85
CCDC88C-210ENST00000555995 MTUS2Q5JR59 1369 aa32.87■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms