RNA–Protein interactions for RNA: ENST00000554811.5

XRCC3-208, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 2

Gene XRCC3, Length 3,668 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-208ENST00000554811 CLSPNQ9HAW4 1339 aa16.74■□□□□ 0.27
XRCC3-208ENST00000554811 TOP2BQ02880 1626 aa16.74■□□□□ 0.27
XRCC3-208ENST00000554811 PRXQ9BXM0 1461 aa16.73■□□□□ 0.27
XRCC3-208ENST00000554811 TONSLQ96HA7 1378 aa16.73■□□□□ 0.27
XRCC3-208ENST00000554811 ARHGAP35Q9NRY4 1499 aa16.73■□□□□ 0.27
XRCC3-208ENST00000554811 FHOD3Q2V2M9 1422 aa16.72■□□□□ 0.27
XRCC3-208ENST00000554811 ZNF326Q5BKZ1 582 aaKnown RBP16.7■□□□□ 0.26
XRCC3-208ENST00000554811 IGF1RP08069 1367 aa16.7■□□□□ 0.26
XRCC3-208ENST00000554811 PHLDB1Q86UU1 1377 aa16.69■□□□□ 0.26
XRCC3-208ENST00000554811 MTUS2Q5JR59 1369 aa16.69■□□□□ 0.26
XRCC3-208ENST00000554811 SETD5Q9C0A6 1442 aa16.69■□□□□ 0.26
XRCC3-208ENST00000554811 HNRNPUQ00839 825 aaKnown RBP eCLIP16.68■□□□□ 0.26
XRCC3-208ENST00000554811 PEG3Q9GZU2 1588 aa16.65■□□□□ 0.26
XRCC3-208ENST00000554811 FOXD1Q16676 465 aa16.64■□□□□ 0.25
XRCC3-208ENST00000554811 TSHZ2Q9NRE2 1034 aa16.64■□□□□ 0.25
XRCC3-208ENST00000554811 RRBP1Q9P2E9 1410 aaKnown RBP16.61■□□□□ 0.25
XRCC3-208ENST00000554811 TDRD9Q8NDG6 1382 aaKnown RBP16.61■□□□□ 0.25
XRCC3-208ENST00000554811 RAD54L2Q9Y4B4 1467 aa16.61■□□□□ 0.25
XRCC3-208ENST00000554811 FAM9BQ8IZU0 186 aa16.6■□□□□ 0.25
XRCC3-208ENST00000554811 FGD5Q6ZNL6 1462 aa16.6■□□□□ 0.25
XRCC3-208ENST00000554811 ERICH3Q5RHP9 1530 aa16.59■□□□□ 0.25
XRCC3-208ENST00000554811 CADPSQ9ULU8 1353 aa16.58■□□□□ 0.25
XRCC3-208ENST00000554811 NCAPD3P42695 1498 aa16.57■□□□□ 0.24
XRCC3-208ENST00000554811 PPP1R15AO75807 674 aaPredicted RBP16.56■□□□□ 0.24
XRCC3-208ENST00000554811 ERICH6Q7L0X2 663 aa16.56■□□□□ 0.24
XRCC3-208ENST00000554811 ZNF777Q9ULD5 760 aaPredicted RBP16.56■□□□□ 0.24
XRCC3-208ENST00000554811 FBLN2P98095 1184 aa16.56■□□□□ 0.24
XRCC3-208ENST00000554811 CFTRP13569 1480 aa16.55■□□□□ 0.24
XRCC3-208ENST00000554811 WDR97A6NE52 1622 aa16.53■□□□□ 0.24
XRCC3-208ENST00000554811 FHAD1B1AJZ9 1412 aa16.53■□□□□ 0.24
XRCC3-208ENST00000554811 LRRC9Q6ZRR7 1453 aa16.52■□□□□ 0.23
XRCC3-208ENST00000554811 BIVM-ERCC5R4GMW8 1640 aa16.49■□□□□ 0.23
XRCC3-208ENST00000554811 NESP48681 1621 aa16.48■□□□□ 0.23
XRCC3-208ENST00000554811 DNAJC5BQ9UF47 199 aa16.48■□□□□ 0.23
XRCC3-208ENST00000554811 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
XRCC3-208ENST00000554811 TIAM1Q13009 1591 aa16.44■□□□□ 0.22
XRCC3-208ENST00000554811 HSPA5P11021 654 aaKnown RBP16.44■□□□□ 0.22
XRCC3-208ENST00000554811 MRS2Q9HD23 443 aa16.43■□□□□ 0.22
XRCC3-208ENST00000554811 MAPKBP1O60336 1514 aa16.43■□□□□ 0.22
XRCC3-208ENST00000554811 PRKCSHP14314 528 aaPredicted RBP16.42■□□□□ 0.22
XRCC3-208ENST00000554811 SALL2Q9Y467 1007 aaPredicted RBP16.42■□□□□ 0.22
XRCC3-208ENST00000554811 EIF4G2P78344 907 aaKnown RBP eCLIP16.4■□□□□ 0.22
XRCC3-208ENST00000554811 RBM19Q9Y4C8 960 aaKnown RBP16.4■□□□□ 0.22
XRCC3-208ENST00000554811 CDK11AQ9UQ88 783 aaPredicted RBP16.39■□□□□ 0.21
XRCC3-208ENST00000554811 HMGXB3Q12766 1538 aa16.39■□□□□ 0.21
XRCC3-208ENST00000554811 ANP32EQ9BTT0 268 aa16.39■□□□□ 0.21
XRCC3-208ENST00000554811 SLC4A1APQ9BWU0 796 aaKnown RBP16.38■□□□□ 0.21
XRCC3-208ENST00000554811 PCF11O94913 1555 aaKnown RBP16.38■□□□□ 0.21
XRCC3-208ENST00000554811 CCDC18Q5T9S5 1454 aa16.37■□□□□ 0.21
XRCC3-208ENST00000554811 KDM2AQ9Y2K7 1162 aa16.36■□□□□ 0.21
XRCC3-208ENST00000554811 L3MBTL2Q969R5 705 aa16.35■□□□□ 0.21
XRCC3-208ENST00000554811 CCDC184Q52MB2 194 aa16.35■□□□□ 0.21
XRCC3-208ENST00000554811 B4GALNT3Q6L9W6 998 aa16.34■□□□□ 0.21
XRCC3-208ENST00000554811 FGD6Q6ZV73 1430 aa16.34■□□□□ 0.21
XRCC3-208ENST00000554811 CCER2I3L3R5 266 aa16.33■□□□□ 0.2
XRCC3-208ENST00000554811 MPHOSPH9Q99550 1183 aa16.31■□□□□ 0.2
XRCC3-208ENST00000554811 FMN1Q68DA7 1419 aa16.31■□□□□ 0.2
XRCC3-208ENST00000554811 ZNF644Q9H582 1327 aaPredicted RBP16.31■□□□□ 0.2
XRCC3-208ENST00000554811 POLA1P09884 1462 aaPredicted RBP16.3■□□□□ 0.2
XRCC3-208ENST00000554811 BCL11AQ9H165 835 aa16.3■□□□□ 0.2
XRCC3-208ENST00000554811 TIMELESSQ9UNS1 1208 aa16.29■□□□□ 0.2
XRCC3-208ENST00000554811 PTPRKQ15262 1439 aa16.28■□□□□ 0.2
XRCC3-208ENST00000554811 WASHC2AQ641Q2 1341 aa16.28■□□□□ 0.2
XRCC3-208ENST00000554811 CC2D2AQ9P2K1 1620 aa16.26■□□□□ 0.19
XRCC3-208ENST00000554811 CASKIN1Q8WXD9 1431 aa16.25■□□□□ 0.19
XRCC3-208ENST00000554811 TOPBP1Q92547 1522 aa16.24■□□□□ 0.19
XRCC3-208ENST00000554811 NCOA2Q15596 1464 aa16.24■□□□□ 0.19
XRCC3-208ENST00000554811 C11orf95C9JLR9 678 aaPredicted RBP16.22■□□□□ 0.19
XRCC3-208ENST00000554811 AQRO60306 1485 aaKnown RBP eCLIP16.22■□□□□ 0.196e-6■■■■□ 25.1
XRCC3-208ENST00000554811 CFDP1Q9UEE9 299 aaPredicted RBP16.21■□□□□ 0.19
XRCC3-208ENST00000554811 FYCO1Q9BQS8 1478 aa16.21■□□□□ 0.18
XRCC3-208ENST00000554811 UACAQ9BZF9 1416 aa16.2■□□□□ 0.18
XRCC3-208ENST00000554811 NBR1Q14596 966 aa16.2■□□□□ 0.18
XRCC3-208ENST00000554811 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.2■□□□□ 0.18
XRCC3-208ENST00000554811 MYOM3Q5VTT5 1437 aa16.19■□□□□ 0.18
XRCC3-208ENST00000554811 GAPVD1Q14C86 1478 aa16.19■□□□□ 0.18
XRCC3-208ENST00000554811 RGL3Q3MIN7 710 aa16.18■□□□□ 0.18
XRCC3-208ENST00000554811 NPM2Q86SE8 214 aaKnown RBP16.18■□□□□ 0.18
XRCC3-208ENST00000554811 NAIPQ13075 1403 aa16.18■□□□□ 0.18
XRCC3-208ENST00000554811 NBPF8Q3BBV2 869 aa16.17■□□□□ 0.18
XRCC3-208ENST00000554811 TMC1Q8TDI8 760 aa16.17■□□□□ 0.18
XRCC3-208ENST00000554811 CHMP7Q8WUX9 453 aaPredicted RBP16.16■□□□□ 0.18
XRCC3-208ENST00000554811 PDS5BQ9NTI5 1447 aa16.15■□□□□ 0.18
XRCC3-208ENST00000554811 PRKRIP1Q9H875 184 aaPredicted RBP16.15■□□□□ 0.18
XRCC3-208ENST00000554811 HFM1A2PYH4 1435 aa16.14■□□□□ 0.17
XRCC3-208ENST00000554811 PKD2Q13563 968 aa16.14■□□□□ 0.17
XRCC3-208ENST00000554811 CCDC136Q96JN2 1154 aa16.14■□□□□ 0.17
XRCC3-208ENST00000554811 CDK13Q14004 1512 aaKnown RBP16.11■□□□□ 0.17
XRCC3-208ENST00000554811 MYT1LQ9UL68 1186 aa16.11■□□□□ 0.17
XRCC3-208ENST00000554811 ABCA10Q8WWZ4 1543 aa16.11■□□□□ 0.17
XRCC3-208ENST00000554811 CARD11Q9BXL7 1154 aa16.1■□□□□ 0.17
XRCC3-208ENST00000554811 PPP4R2Q9NY27 417 aa16.1■□□□□ 0.17
XRCC3-208ENST00000554811 DNMBPQ6XZF7 1577 aa16.1■□□□□ 0.17
XRCC3-208ENST00000554811 MAP3K1Q13233 1512 aa16.09■□□□□ 0.17
XRCC3-208ENST00000554811 URB2Q14146 1524 aaKnown RBP16.08■□□□□ 0.16
XRCC3-208ENST00000554811 KIF7Q2M1P5 1343 aa16.08■□□□□ 0.16
XRCC3-208ENST00000554811 DCAF11Q8TEB1 546 aa16.07■□□□□ 0.16
XRCC3-208ENST00000554811 MSH5O43196 834 aa16.07■□□□□ 0.16
XRCC3-208ENST00000554811 EFCAB5A4FU69 1503 aa16.06■□□□□ 0.16
XRCC3-208ENST00000554811 PTPN23Q9H3S7 1636 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms