RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 KIF27Q86VH2 1401 aa11.58□□□□□ -0.56
SLIRP-203ENST00000554074 IGF1RP08069 1367 aa11.54□□□□□ -0.56
SLIRP-203ENST00000554074 PRG4Q92954 1404 aaPredicted RBP11.53□□□□□ -0.56
SLIRP-203ENST00000554074 JPH4Q96JJ6 628 aa11.53□□□□□ -0.56
SLIRP-203ENST00000554074 KIAA0586Q9BVV6 1533 aa11.52□□□□□ -0.57
SLIRP-203ENST00000554074 KIF13AQ9H1H9 1805 aa11.5□□□□□ -0.57
SLIRP-203ENST00000554074 CARMIL1Q5VZK9 1371 aa11.46□□□□□ -0.57
SLIRP-203ENST00000554074 ADCY10Q96PN6 1610 aa11.45□□□□□ -0.58
SLIRP-203ENST00000554074 MAPKBP1O60336 1514 aa11.44□□□□□ -0.58
SLIRP-203ENST00000554074 IQGAP2Q13576 1575 aa11.43□□□□□ -0.58
SLIRP-203ENST00000554074 RAPGEF2Q9Y4G8 1499 aa11.39□□□□□ -0.59
SLIRP-203ENST00000554074 CARMIL2Q6F5E8 1435 aa11.39□□□□□ -0.59
SLIRP-203ENST00000554074 ABCC10Q5T3U5 1492 aa11.38□□□□□ -0.59
SLIRP-203ENST00000554074 DIP2BQ9P265 1576 aa11.38□□□□□ -0.59
SLIRP-203ENST00000554074 CTTNBP2Q8WZ74 1663 aa11.38□□□□□ -0.59
SLIRP-203ENST00000554074 NPM1P06748 294 aaKnown RBP eCLIP11.37□□□□□ -0.59
SLIRP-203ENST00000554074 PTPRGP23470 1445 aa11.36□□□□□ -0.59
SLIRP-203ENST00000554074 UGGT2Q9NYU1 1516 aa11.36□□□□□ -0.59
SLIRP-203ENST00000554074 TNIKQ9UKE5 1360 aa11.36□□□□□ -0.59
SLIRP-203ENST00000554074 DISP1Q96F81 1524 aa11.35□□□□□ -0.59
SLIRP-203ENST00000554074 UHRF1BP1LA0JNW5 1464 aa11.34□□□□□ -0.59
SLIRP-203ENST00000554074 KIAA0556O60303 1618 aa11.33□□□□□ -0.6
SLIRP-203ENST00000554074 ABCC2Q92887 1545 aa11.33□□□□□ -0.6
SLIRP-203ENST00000554074 TSPOAP1O95153 1857 aa11.32□□□□□ -0.6
SLIRP-203ENST00000554074 FAM69CQ0P6D2 419 aa11.31□□□□□ -0.6
SLIRP-203ENST00000554074 UACAQ9BZF9 1416 aa11.3□□□□□ -0.6
SLIRP-203ENST00000554074 PRXQ9BXM0 1461 aa11.3□□□□□ -0.6
SLIRP-203ENST00000554074 GLI2P10070 1586 aa11.28□□□□□ -0.6
SLIRP-203ENST00000554074 PLB1Q6P1J6 1458 aa11.28□□□□□ -0.6
SLIRP-203ENST00000554074 KDM5BQ9UGL1 1544 aa11.28□□□□□ -0.6
SLIRP-203ENST00000554074 GOLGA3Q08378 1498 aa11.27□□□□□ -0.6
SLIRP-203ENST00000554074 ZCCHC11Q5TAX3 1644 aaKnown RBP11.27□□□□□ -0.61
SLIRP-203ENST00000554074 KDM6BO15054 1643 aa11.26□□□□□ -0.61
SLIRP-203ENST00000554074 PPRC1Q5VV67 1664 aaKnown RBP11.26□□□□□ -0.61
SLIRP-203ENST00000554074 ASXL2Q76L83 1435 aa11.26□□□□□ -0.61
SLIRP-203ENST00000554074 MAP3K4Q9Y6R4 1608 aa11.24□□□□□ -0.61
SLIRP-203ENST00000554074 ABCA8O94911 1581 aa11.22□□□□□ -0.61
SLIRP-203ENST00000554074 TTBK1Q5TCY1 1321 aaPredicted RBP11.22□□□□□ -0.61
SLIRP-203ENST00000554074 EPRSP07814 1512 aaKnown RBP11.21□□□□□ -0.61
SLIRP-203ENST00000554074 EEA1Q15075 1411 aa11.21□□□□□ -0.61
SLIRP-203ENST00000554074 CSRNP3Q8WYN3 585 aa11.18□□□□□ -0.62
SLIRP-203ENST00000554074 SAMD9Q5K651 1589 aa11.18□□□□□ -0.62
SLIRP-203ENST00000554074 WDR7Q9Y4E6 1490 aa11.18□□□□□ -0.62
SLIRP-203ENST00000554074 CFAP43Q8NDM7 1665 aa11.17□□□□□ -0.62
SLIRP-203ENST00000554074 TEX14Q8IWB6 1497 aa11.17□□□□□ -0.62
SLIRP-203ENST00000554074 SENP3Q9H4L4 574 aaPredicted RBP11.16□□□□□ -0.62
SLIRP-203ENST00000554074 KIF21BO75037 1637 aa11.13□□□□□ -0.63
SLIRP-203ENST00000554074 FAM9AQ8IZU1 332 aaPredicted RBP11.12□□□□□ -0.63
SLIRP-203ENST00000554074 MAGI3Q5TCQ9 1506 aa11.12□□□□□ -0.63
SLIRP-203ENST00000554074 RAPGEF6Q8TEU7 1601 aa11.12□□□□□ -0.63
SLIRP-203ENST00000554074 ATP10BO94823 1461 aa11.09□□□□□ -0.63
SLIRP-203ENST00000554074 COL17A1Q9UMD9 1497 aaPredicted RBP11.09□□□□□ -0.63
SLIRP-203ENST00000554074 EFCAB5A4FU69 1503 aa11.09□□□□□ -0.63
SLIRP-203ENST00000554074 CD109Q6YHK3 1445 aa11.09□□□□□ -0.63
SLIRP-203ENST00000554074 ABCA9Q8IUA7 1624 aa11.08□□□□□ -0.64
SLIRP-203ENST00000554074 PHF23Q9BUL5 403 aaPredicted RBP11.07□□□□□ -0.64
SLIRP-203ENST00000554074 KDM4FA0A1W2PPD8 638 aa11.05□□□□□ -0.64
SLIRP-203ENST00000554074 ILDR1Q86SU0 546 aaPredicted RBP11.05□□□□□ -0.64
SLIRP-203ENST00000554074 P3H3Q8IVL6 736 aa11.05□□□□□ -0.64
SLIRP-203ENST00000554074 KCNH8Q96L42 1107 aa11.04□□□□□ -0.64
SLIRP-203ENST00000554074 NUP153P49790 1475 aaKnown RBP11.04□□□□□ -0.64
SLIRP-203ENST00000554074 ARAP3Q8WWN8 1544 aa11.04□□□□□ -0.64
SLIRP-203ENST00000554074 PHLDB1Q86UU1 1377 aa11.03□□□□□ -0.64
SLIRP-203ENST00000554074 FHOD3Q2V2M9 1422 aa11.02□□□□□ -0.64
SLIRP-203ENST00000554074 ADGRL1O94910 1474 aa11.01□□□□□ -0.65
SLIRP-203ENST00000554074 NEO1Q92859 1461 aa11□□□□□ -0.65
SLIRP-203ENST00000554074 ARID3CA6NKF2 412 aa10.98□□□□□ -0.65
SLIRP-203ENST00000554074 CFAP74Q9C0B2 1584 aa10.97□□□□□ -0.65
SLIRP-203ENST00000554074 HECW1Q76N89 1606 aa10.95□□□□□ -0.66
SLIRP-203ENST00000554074 FMN1Q68DA7 1419 aa10.95□□□□□ -0.66
SLIRP-203ENST00000554074 PLEKHD1A6NEE1 506 aa10.95□□□□□ -0.66
SLIRP-203ENST00000554074 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.95□□□□□ -0.66
SLIRP-203ENST00000554074 HNRNPUL2Q1KMD3 747 aaKnown RBP10.95□□□□□ -0.66
SLIRP-203ENST00000554074 RICTORQ6R327 1708 aa10.95□□□□□ -0.66
SLIRP-203ENST00000554074 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.94□□□□□ -0.66
SLIRP-203ENST00000554074 RANGAP1P46060 587 aaPredicted RBP10.94□□□□□ -0.66
SLIRP-203ENST00000554074 FRMPD1Q5SYB0 1578 aa10.94□□□□□ -0.66
SLIRP-203ENST00000554074 ARHGAP35Q9NRY4 1499 aa10.93□□□□□ -0.66
SLIRP-203ENST00000554074 UBTFP17480 764 aaKnown RBP10.93□□□□□ -0.66
SLIRP-203ENST00000554074 TTC37Q6PGP7 1564 aa10.93□□□□□ -0.66
SLIRP-203ENST00000554074 CDK13Q14004 1512 aaKnown RBP10.92□□□□□ -0.66
SLIRP-203ENST00000554074 LRRIQ1Q96JM4 1722 aa10.91□□□□□ -0.66
SLIRP-203ENST00000554074 MYO5CQ9NQX4 1742 aa10.91□□□□□ -0.66
SLIRP-203ENST00000554074 ADAMTSL3P82987 1691 aa10.9□□□□□ -0.66
SLIRP-203ENST00000554074 FANCAO15360 1455 aa10.9□□□□□ -0.66
SLIRP-203ENST00000554074 ZMYM4Q5VZL5 1548 aa10.89□□□□□ -0.67
SLIRP-203ENST00000554074 ARHGEF40Q8TER5 1519 aa10.89□□□□□ -0.67
SLIRP-203ENST00000554074 BCORL1Q5H9F3 1711 aa10.89□□□□□ -0.67
SLIRP-203ENST00000554074 DENND4BO75064 1496 aaPredicted RBP10.88□□□□□ -0.67
SLIRP-203ENST00000554074 AKNAQ7Z591 1439 aa10.88□□□□□ -0.67
SLIRP-203ENST00000554074 RAPGEF3O95398 923 aa10.87□□□□□ -0.67
SLIRP-203ENST00000554074 KIF14Q15058 1648 aa10.87□□□□□ -0.67
SLIRP-203ENST00000554074 HECW2Q9P2P5 1572 aa10.86□□□□□ -0.67
SLIRP-203ENST00000554074 PLCH2O75038 1416 aa10.86□□□□□ -0.67
SLIRP-203ENST00000554074 CDK11AQ9UQ88 783 aaPredicted RBP10.86□□□□□ -0.67
SLIRP-203ENST00000554074 MAGI2Q86UL8 1455 aa10.85□□□□□ -0.67
SLIRP-203ENST00000554074 TROQ12816 1431 aaPredicted RBP10.84□□□□□ -0.67
SLIRP-203ENST00000554074 CCDC18Q5T9S5 1454 aa10.84□□□□□ -0.67
SLIRP-203ENST00000554074 PCF11O94913 1555 aaKnown RBP10.84□□□□□ -0.67
SLIRP-203ENST00000554074 CDC42BPBQ9Y5S2 1711 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms