RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 KIAA0586Q9BVV6 1533 aa20.03■□□□□ 0.8
SHMT2-209ENST00000553949 UBTFP17480 764 aaKnown RBP19.99■□□□□ 0.79
SHMT2-209ENST00000553949 JPH4Q96JJ6 628 aa19.96■□□□□ 0.79
SHMT2-209ENST00000553949 IQGAP2Q13576 1575 aa19.95■□□□□ 0.78
SHMT2-209ENST00000553949 DNAJC5Q9H3Z4 198 aa19.95■□□□□ 0.78
SHMT2-209ENST00000553949 CTTNBP2Q8WZ74 1663 aa19.92■□□□□ 0.78
SHMT2-209ENST00000553949 SHROOM2Q13796 1616 aa19.91■□□□□ 0.78
SHMT2-209ENST00000553949 LOC105371045A0A1W2PR82 267 aa19.91■□□□□ 0.78
SHMT2-209ENST00000553949 PRG4Q92954 1404 aaPredicted RBP19.89■□□□□ 0.77
SHMT2-209ENST00000553949 UGGT2Q9NYU1 1516 aa19.87■□□□□ 0.77
SHMT2-209ENST00000553949 TNIKQ9UKE5 1360 aa19.87■□□□□ 0.77
SHMT2-209ENST00000553949 ARHGEF11O15085 1522 aa19.85■□□□□ 0.77
SHMT2-209ENST00000553949 RANGAP1P46060 587 aaPredicted RBP19.83■□□□□ 0.77
SHMT2-209ENST00000553949 ERCC6L2Q5T890 1561 aa19.83■□□□□ 0.76
SHMT2-209ENST00000553949 CARMIL2Q6F5E8 1435 aa19.82■□□□□ 0.76
SHMT2-209ENST00000553949 DISP1Q96F81 1524 aa19.81■□□□□ 0.76
SHMT2-209ENST00000553949 RIMBP3CA6NJZ7 1639 aa19.79■□□□□ 0.76
SHMT2-209ENST00000553949 RIMBP3BA6NNM3 1639 aa19.79■□□□□ 0.76
SHMT2-209ENST00000553949 RIMBP3Q9UFD9 1639 aa19.79■□□□□ 0.76
SHMT2-209ENST00000553949 KIAA0556O60303 1618 aa19.76■□□□□ 0.75
SHMT2-209ENST00000553949 P3H3Q8IVL6 736 aa19.74■□□□□ 0.75
SHMT2-209ENST00000553949 SAMD9Q5K651 1589 aa19.74■□□□□ 0.75
SHMT2-209ENST00000553949 EFCAB5A4FU69 1503 aa19.73■□□□□ 0.75
SHMT2-209ENST00000553949 ARAP1Q96P48 1450 aa19.72■□□□□ 0.75
SHMT2-209ENST00000553949 CLIP1P30622 1438 aa19.71■□□□□ 0.75
SHMT2-209ENST00000553949 PTPRGP23470 1445 aa19.7■□□□□ 0.74
SHMT2-209ENST00000553949 CEP162Q5TB80 1403 aa19.7■□□□□ 0.74
SHMT2-209ENST00000553949 ARHGAP35Q9NRY4 1499 aa19.7■□□□□ 0.74
SHMT2-209ENST00000553949 TTBK1Q5TCY1 1321 aaPredicted RBP19.69■□□□□ 0.74
SHMT2-209ENST00000553949 CYB5RLQ6IPT4 315 aa19.68■□□□□ 0.74
SHMT2-209ENST00000553949 FHOD3Q2V2M9 1422 aa19.68■□□□□ 0.74
SHMT2-209ENST00000553949 UACAQ9BZF9 1416 aa19.57■□□□□ 0.72
SHMT2-209ENST00000553949 PLB1Q6P1J6 1458 aa19.56■□□□□ 0.72
SHMT2-209ENST00000553949 FMN1Q68DA7 1419 aa19.56■□□□□ 0.72
SHMT2-209ENST00000553949 UHRF1BP1LA0JNW5 1464 aa19.53■□□□□ 0.72
SHMT2-209ENST00000553949 ABCA8O94911 1581 aa19.53■□□□□ 0.72
SHMT2-209ENST00000553949 ABCC2Q92887 1545 aa19.51■□□□□ 0.71
SHMT2-209ENST00000553949 ADCY10Q96PN6 1610 aa19.5■□□□□ 0.71
SHMT2-209ENST00000553949 RAPGEF6Q8TEU7 1601 aa19.47■□□□□ 0.71
SHMT2-209ENST00000553949 CASKIN1Q8WXD9 1431 aa19.45■□□□□ 0.7
SHMT2-209ENST00000553949 VPS8Q8N3P4 1428 aa19.44■□□□□ 0.7
SHMT2-209ENST00000553949 NUP153P49790 1475 aaKnown RBP19.44■□□□□ 0.7
SHMT2-209ENST00000553949 NPM1P06748 294 aaKnown RBP eCLIP19.44■□□□□ 0.7
SHMT2-209ENST00000553949 ATP1B4Q9UN42 357 aaPredicted RBP19.44■□□□□ 0.7
SHMT2-209ENST00000553949 KDM5BQ9UGL1 1544 aa19.43■□□□□ 0.7
SHMT2-209ENST00000553949 ARID3CA6NKF2 412 aa19.43■□□□□ 0.7
SHMT2-209ENST00000553949 PCF11O94913 1555 aaKnown RBP19.42■□□□□ 0.7
SHMT2-209ENST00000553949 FYCO1Q9BQS8 1478 aa19.41■□□□□ 0.7
SHMT2-209ENST00000553949 ATP10BO94823 1461 aa19.4■□□□□ 0.7
SHMT2-209ENST00000553949 HECW1Q76N89 1606 aa19.4■□□□□ 0.7
SHMT2-209ENST00000553949 EPRSP07814 1512 aaKnown RBP19.36■□□□□ 0.69
SHMT2-209ENST00000553949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.36■□□□□ 0.69
SHMT2-209ENST00000553949 HNRNPUL2Q1KMD3 747 aaKnown RBP19.36■□□□□ 0.69
SHMT2-209ENST00000553949 ZCCHC11Q5TAX3 1644 aaKnown RBP19.36■□□□□ 0.69
SHMT2-209ENST00000553949 CDK13Q14004 1512 aaKnown RBP19.33■□□□□ 0.68
SHMT2-209ENST00000553949 MAPKBP1O60336 1514 aa19.32■□□□□ 0.68
SHMT2-209ENST00000553949 CCDC18Q5T9S5 1454 aa19.32■□□□□ 0.68
SHMT2-209ENST00000553949 ASXL2Q76L83 1435 aa19.31■□□□□ 0.68
SHMT2-209ENST00000553949 PLEKHD1A6NEE1 506 aa19.27■□□□□ 0.68
SHMT2-209ENST00000553949 CDK11AQ9UQ88 783 aaPredicted RBP19.27■□□□□ 0.68
SHMT2-209ENST00000553949 LRRIQ1Q96JM4 1722 aa19.27■□□□□ 0.68
SHMT2-209ENST00000553949 WDR7Q9Y4E6 1490 aa19.26■□□□□ 0.67
SHMT2-209ENST00000553949 APLP2Q06481 763 aa19.23■□□□□ 0.67
SHMT2-209ENST00000553949 MAP3K1Q13233 1512 aa19.21■□□□□ 0.67
SHMT2-209ENST00000553949 KCNH8Q96L42 1107 aa19.21■□□□□ 0.67
SHMT2-209ENST00000553949 TIAM1Q13009 1591 aa19.2■□□□□ 0.66
SHMT2-209ENST00000553949 TROQ12816 1431 aaPredicted RBP19.2■□□□□ 0.66
SHMT2-209ENST00000553949 ABCC10Q5T3U5 1492 aa19.2■□□□□ 0.66
SHMT2-209ENST00000553949 MAGI3Q5TCQ9 1506 aa19.19■□□□□ 0.66
SHMT2-209ENST00000553949 CFAP43Q8NDM7 1665 aa19.18■□□□□ 0.66
SHMT2-209ENST00000553949 FAM69CQ0P6D2 419 aa19.17■□□□□ 0.66
SHMT2-209ENST00000553949 MTUS2Q5JR59 1369 aa19.17■□□□□ 0.66
SHMT2-209ENST00000553949 TRHP20396 242 aaPredicted RBP19.16■□□□□ 0.66
SHMT2-209ENST00000553949 DIP2BQ9P265 1576 aa19.15■□□□□ 0.66
SHMT2-209ENST00000553949 KANK4Q5T7N3 995 aaPredicted RBP19.15■□□□□ 0.66
SHMT2-209ENST00000553949 LRRC9Q6ZRR7 1453 aa19.14■□□□□ 0.65
SHMT2-209ENST00000553949 EHBP1L1Q8N3D4 1523 aa19.13■□□□□ 0.65
SHMT2-209ENST00000553949 GLI2P10070 1586 aa19.13■□□□□ 0.65
SHMT2-209ENST00000553949 KIF14Q15058 1648 aa19.1■□□□□ 0.65
SHMT2-209ENST00000553949 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.08■□□□□ 0.64
SHMT2-209ENST00000553949 ABCA9Q8IUA7 1624 aa19.07■□□□□ 0.64
SHMT2-209ENST00000553949 KIF13AQ9H1H9 1805 aa19.07■□□□□ 0.64
SHMT2-209ENST00000553949 CD109Q6YHK3 1445 aa19.06■□□□□ 0.64
SHMT2-209ENST00000553949 TTC37Q6PGP7 1564 aa19.05■□□□□ 0.64
SHMT2-209ENST00000553949 MAP3K4Q9Y6R4 1608 aa19.03■□□□□ 0.64
SHMT2-209ENST00000553949 NCOA2Q15596 1464 aa19.03■□□□□ 0.64
SHMT2-209ENST00000553949 PPARGC1BQ86YN6 1023 aaKnown RBP19.03■□□□□ 0.64
SHMT2-209ENST00000553949 SUPT6HQ7KZ85 1726 aaKnown RBP19.01■□□□□ 0.63
SHMT2-209ENST00000553949 CCNB3Q8WWL7 1395 aa19■□□□□ 0.63
SHMT2-209ENST00000553949 PLCH2O75038 1416 aa19■□□□□ 0.63
SHMT2-209ENST00000553949 GPATCH8Q9UKJ3 1502 aaKnown RBP18.98■□□□□ 0.63
SHMT2-209ENST00000553949 TEX14Q8IWB6 1497 aa18.95■□□□□ 0.62
SHMT2-209ENST00000553949 ARAP3Q8WWN8 1544 aa18.95■□□□□ 0.62
SHMT2-209ENST00000553949 PPRC1Q5VV67 1664 aaKnown RBP18.94■□□□□ 0.62
SHMT2-209ENST00000553949 MYO5CQ9NQX4 1742 aa18.94■□□□□ 0.62
SHMT2-209ENST00000553949 PHLDB1Q86UU1 1377 aa18.93■□□□□ 0.62
SHMT2-209ENST00000553949 FANCAO15360 1455 aa18.93■□□□□ 0.62
SHMT2-209ENST00000553949 EFCAB2Q5VUJ9 269 aa18.93■□□□□ 0.62
SHMT2-209ENST00000553949 CFDP1Q9UEE9 299 aaPredicted RBP18.93■□□□□ 0.62
SHMT2-209ENST00000553949 ARHGAP5Q13017 1502 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms