RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 ATAD2BQ9ULI0 1458 aa12.44□□□□□ -0.42
VIPAS39-205ENST00000553691 BAZ1AQ9NRL2 1556 aaPredicted RBP12.41□□□□□ -0.42
VIPAS39-205ENST00000553691 FARP1Q9Y4F1 1045 aaPredicted RBP12.4□□□□□ -0.42
VIPAS39-205ENST00000553691 PEG3Q9GZU2 1588 aa12.39□□□□□ -0.43
VIPAS39-205ENST00000553691 HMGXB3Q12766 1538 aa12.38□□□□□ -0.43
VIPAS39-205ENST00000553691 SMARCA2P51531 1590 aa12.38□□□□□ -0.43
VIPAS39-205ENST00000553691 MROH2BQ7Z745 1585 aa12.38□□□□□ -0.43
VIPAS39-205ENST00000553691 MIER1Q8N108 512 aa12.36□□□□□ -0.43
VIPAS39-205ENST00000553691 EVX2Q03828 476 aa12.35□□□□□ -0.43
VIPAS39-205ENST00000553691 NESP48681 1621 aa12.34□□□□□ -0.43
VIPAS39-205ENST00000553691 KIF21AQ7Z4S6 1674 aa12.33□□□□□ -0.44
VIPAS39-205ENST00000553691 PLCD3Q8N3E9 789 aa12.32□□□□□ -0.44
VIPAS39-205ENST00000553691 FBXO3Q9UK99 471 aa12.3□□□□□ -0.44
VIPAS39-205ENST00000553691 MNX1P50219 401 aaPredicted RBP12.29□□□□□ -0.44
VIPAS39-205ENST00000553691 C19orf67A6NJJ6 358 aa12.28□□□□□ -0.44
VIPAS39-205ENST00000553691 BAZ1BQ9UIG0 1483 aaKnown RBP12.27□□□□□ -0.44
VIPAS39-205ENST00000553691 RIMBP3CA6NJZ7 1639 aa12.24□□□□□ -0.45
VIPAS39-205ENST00000553691 RIMBP3BA6NNM3 1639 aa12.24□□□□□ -0.45
VIPAS39-205ENST00000553691 PLEKHG5O94827 1062 aa12.24□□□□□ -0.45
VIPAS39-205ENST00000553691 CD44P16070 742 aaKnown RBP12.24□□□□□ -0.45
VIPAS39-205ENST00000553691 RIMBP3Q9UFD9 1639 aa12.24□□□□□ -0.45
VIPAS39-205ENST00000553691 WIZO95785 1651 aa12.23□□□□□ -0.45
VIPAS39-205ENST00000553691 NPM1P06748 294 aaKnown RBP eCLIP12.21□□□□□ -0.45
VIPAS39-205ENST00000553691 VASPP50552 380 aaPredicted RBP12.21□□□□□ -0.45
VIPAS39-205ENST00000553691 SP7Q8TDD2 431 aaPredicted RBP12.21□□□□□ -0.45
VIPAS39-205ENST00000553691 RSF1Q96T23 1441 aaPredicted RBP12.17□□□□□ -0.46
VIPAS39-205ENST00000553691 LAMC3Q9Y6N6 1575 aa12.16□□□□□ -0.46
VIPAS39-205ENST00000553691 PDS5BQ9NTI5 1447 aa12.15□□□□□ -0.46
VIPAS39-205ENST00000553691 ZRANB1Q9UGI0 708 aa12.15□□□□□ -0.46
VIPAS39-205ENST00000553691 TSPYL2Q9H2G4 693 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-205ENST00000553691 KLHL34Q8N239 644 aa12.1□□□□□ -0.47
VIPAS39-205ENST00000553691 TOP2AP11388 1531 aaKnown RBP12.08□□□□□ -0.48
VIPAS39-205ENST00000553691 PAK3O75914 559 aaPredicted RBP12.08□□□□□ -0.48
VIPAS39-205ENST00000553691 RASEFQ8IZ41 740 aa12.08□□□□□ -0.48
VIPAS39-205ENST00000553691 ZBTB47Q9UFB7 747 aaPredicted RBP12.08□□□□□ -0.48
VIPAS39-205ENST00000553691 IFNLR1Q8IU57 520 aaPredicted RBP12.05□□□□□ -0.48
VIPAS39-205ENST00000553691 PHF12Q96QT6 1004 aa12.05□□□□□ -0.48
VIPAS39-205ENST00000553691 ARHGEF11O15085 1522 aa12.05□□□□□ -0.48
VIPAS39-205ENST00000553691 WDR62O43379 1518 aa12.05□□□□□ -0.48
VIPAS39-205ENST00000553691 GABBR2O75899 941 aa12.04□□□□□ -0.48
VIPAS39-205ENST00000553691 NUBP1P53384 320 aa12.04□□□□□ -0.48
VIPAS39-205ENST00000553691 CADPSQ9ULU8 1353 aa12.04□□□□□ -0.48
VIPAS39-205ENST00000553691 MRC2Q9UBG0 1479 aa12.02□□□□□ -0.48
VIPAS39-205ENST00000553691 ZNF579Q8NAF0 562 aaKnown RBP12.02□□□□□ -0.49
VIPAS39-205ENST00000553691 CFTRP13569 1480 aa11.98□□□□□ -0.49
VIPAS39-205ENST00000553691 CCDC61Q9Y6R9 512 aa11.96□□□□□ -0.49
VIPAS39-205ENST00000553691 ILDR1Q86SU0 546 aaPredicted RBP11.95□□□□□ -0.5
VIPAS39-205ENST00000553691 DCAF8Q5TAQ9 597 aa11.94□□□□□ -0.5
VIPAS39-205ENST00000553691 FAM212AQ96EL1 285 aa11.93□□□□□ -0.5
VIPAS39-205ENST00000553691 CCDC88BA6NC98 1476 aa11.93□□□□□ -0.5
VIPAS39-205ENST00000553691 GALR2O43603 387 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-205ENST00000553691 FANCD2Q9BXW9 1451 aa11.91□□□□□ -0.5
VIPAS39-205ENST00000553691 SPOCK2Q92563 424 aa11.91□□□□□ -0.5
VIPAS39-205ENST00000553691 PRDM2Q13029 1718 aa11.91□□□□□ -0.5
VIPAS39-205ENST00000553691 CYB5RLQ6IPT4 315 aa11.9□□□□□ -0.5
VIPAS39-205ENST00000553691 CEP164Q9UPV0 1460 aa11.89□□□□□ -0.51
VIPAS39-205ENST00000553691 MS4A3Q96HJ5 214 aa11.87□□□□□ -0.51
VIPAS39-205ENST00000553691 ARAP1Q96P48 1450 aa11.85□□□□□ -0.51
VIPAS39-205ENST00000553691 MAP3K13O43283 966 aa11.85□□□□□ -0.51
VIPAS39-205ENST00000553691 KIF12Q96FN5 646 aa11.85□□□□□ -0.51
VIPAS39-205ENST00000553691 URB2Q14146 1524 aaKnown RBP11.85□□□□□ -0.51
VIPAS39-205ENST00000553691 PYGBP11216 843 aa11.84□□□□□ -0.51
VIPAS39-205ENST00000553691 CIZ1Q9ULV3 898 aaPredicted RBP11.84□□□□□ -0.51
VIPAS39-205ENST00000553691 CHD1O14646 1710 aa11.82□□□□□ -0.52
VIPAS39-205ENST00000553691 CLCN6P51797 869 aa11.81□□□□□ -0.52
VIPAS39-205ENST00000553691 POTEIP0CG38 1075 aa11.8□□□□□ -0.52
VIPAS39-205ENST00000553691 DCBLD2Q96PD2 775 aa11.8□□□□□ -0.52
VIPAS39-205ENST00000553691 GSE1Q14687 1217 aa11.79□□□□□ -0.52
VIPAS39-205ENST00000553691 TRPC6Q9Y210 931 aa11.78□□□□□ -0.52
VIPAS39-205ENST00000553691 PCDHB13Q9Y5F0 798 aa11.78□□□□□ -0.52
VIPAS39-205ENST00000553691 IFNL1Q8IU54 200 aa11.74□□□□□ -0.53
VIPAS39-205ENST00000553691 TOPBP1Q92547 1522 aa11.73□□□□□ -0.53
VIPAS39-205ENST00000553691 PCDHB8Q9UN66 801 aa11.71□□□□□ -0.53
VIPAS39-205ENST00000553691 DNMBPQ6XZF7 1577 aa11.7□□□□□ -0.54
VIPAS39-205ENST00000553691 IFT140Q96RY7 1462 aa11.67□□□□□ -0.54
VIPAS39-205ENST00000553691 EIF4G3O43432 1585 aaKnown RBP11.67□□□□□ -0.54
VIPAS39-205ENST00000553691 ZNF608Q9ULD9 1512 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-205ENST00000553691 PELP1Q8IZL8 1130 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-205ENST00000553691 SGIP1Q9BQI5 828 aa11.66□□□□□ -0.54
VIPAS39-205ENST00000553691 BMP2KQ9NSY1 1161 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-205ENST00000553691 ABCC8Q09428 1581 aa11.66□□□□□ -0.54
VIPAS39-205ENST00000553691 TARBP1Q13395 1621 aaKnown RBP11.65□□□□□ -0.54
VIPAS39-205ENST00000553691 ATMINO43313 823 aaPredicted RBP11.65□□□□□ -0.54
VIPAS39-205ENST00000553691 ATN1P54259 1190 aaPredicted RBP11.64□□□□□ -0.55
VIPAS39-205ENST00000553691 ASTLQ6HA08 431 aaPredicted RBP11.63□□□□□ -0.55
VIPAS39-205ENST00000553691 POLA1P09884 1462 aaPredicted RBP11.63□□□□□ -0.55
VIPAS39-205ENST00000553691 CUX1P39880 1505 aa11.62□□□□□ -0.55
VIPAS39-205ENST00000553691 SUPT5HO00267 1087 aaKnown RBP11.62□□□□□ -0.55
VIPAS39-205ENST00000553691 CHRM1P11229 460 aaPredicted RBP11.62□□□□□ -0.55
VIPAS39-205ENST00000553691 TTLL13PA6NNM8 815 aa11.6□□□□□ -0.55
VIPAS39-205ENST00000553691 TIE1P35590 1138 aa11.6□□□□□ -0.55
VIPAS39-205ENST00000553691 TMEM106CQ9BVX2 250 aa11.59□□□□□ -0.55
VIPAS39-205ENST00000553691 KIF13AQ9H1H9 1805 aa11.58□□□□□ -0.56
VIPAS39-205ENST00000553691 ZNF467Q7Z7K2 595 aaPredicted RBP11.57□□□□□ -0.56
VIPAS39-205ENST00000553691 FGD5Q6ZNL6 1462 aa11.57□□□□□ -0.56
VIPAS39-205ENST00000553691 RAD54L2Q9Y4B4 1467 aa11.57□□□□□ -0.56
VIPAS39-205ENST00000553691 WDR97A6NE52 1622 aa11.55□□□□□ -0.56
VIPAS39-205ENST00000553691 PKD2Q13563 968 aa11.54□□□□□ -0.56
VIPAS39-205ENST00000553691 TRIM35Q9UPQ4 493 aa11.54□□□□□ -0.56
VIPAS39-205ENST00000553691 AQRO60306 1485 aaKnown RBP eCLIP11.54□□□□□ -0.563e-6■■■■■ 28.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms