RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 JPH4Q96JJ6 628 aa31.93■■■□□ 2.7
HDAC4-217ENST00000553145 KIAA0586Q9BVV6 1533 aa31.93■■■□□ 2.7
HDAC4-217ENST00000553145 PRG4Q92954 1404 aaPredicted RBP31.92■■■□□ 2.7
HDAC4-217ENST00000553145 RAPGEF2Q9Y4G8 1499 aa31.85■■■□□ 2.69
HDAC4-217ENST00000553145 IQGAP2Q13576 1575 aa31.73■■■□□ 2.67
HDAC4-217ENST00000553145 PRXQ9BXM0 1461 aa31.72■■■□□ 2.67
HDAC4-217ENST00000553145 CHIC1Q5VXU3 224 aa31.64■■■□□ 2.66
HDAC4-217ENST00000553145 CSRNP3Q8WYN3 585 aa31.59■■■□□ 2.65
HDAC4-217ENST00000553145 CTTNBP2Q8WZ74 1663 aa31.59■■■□□ 2.65
HDAC4-217ENST00000553145 TRHP20396 242 aaPredicted RBP31.58■■■□□ 2.65
HDAC4-217ENST00000553145 EEA1Q15075 1411 aa31.58■■■□□ 2.65
HDAC4-217ENST00000553145 DISP1Q96F81 1524 aa31.56■■■□□ 2.64
HDAC4-217ENST00000553145 UGGT2Q9NYU1 1516 aa31.56■■■□□ 2.64
HDAC4-217ENST00000553145 CARMIL2Q6F5E8 1435 aa31.56■■■□□ 2.64
HDAC4-217ENST00000553145 ADCY10Q96PN6 1610 aa31.5■■■□□ 2.63
HDAC4-217ENST00000553145 TNIKQ9UKE5 1360 aa31.5■■■□□ 2.63
HDAC4-217ENST00000553145 PTPRGP23470 1445 aa31.49■■■□□ 2.63
HDAC4-217ENST00000553145 FAM9AQ8IZU1 332 aaPredicted RBP31.48■■■□□ 2.63
HDAC4-217ENST00000553145 KIAA0556O60303 1618 aa31.46■■■□□ 2.63
HDAC4-217ENST00000553145 TTBK1Q5TCY1 1321 aaPredicted RBP31.44■■■□□ 2.62
HDAC4-217ENST00000553145 KIF21BO75037 1637 aa31.33■■■□□ 2.61
HDAC4-217ENST00000553145 GOLGA3Q08378 1498 aa31.32■■■□□ 2.6
HDAC4-217ENST00000553145 MAPKBP1O60336 1514 aa31.31■■■□□ 2.6
HDAC4-217ENST00000553145 NPM1P06748 294 aaKnown RBP eCLIP31.3■■■□□ 2.6
HDAC4-217ENST00000553145 UACAQ9BZF9 1416 aa31.29■■■□□ 2.6
HDAC4-217ENST00000553145 UHRF1BP1LA0JNW5 1464 aa31.27■■■□□ 2.6
HDAC4-217ENST00000553145 ABCC2Q92887 1545 aa31.25■■■□□ 2.59
HDAC4-217ENST00000553145 KIF13AQ9H1H9 1805 aa31.25■■■□□ 2.59
HDAC4-217ENST00000553145 SAMD9Q5K651 1589 aa31.19■■■□□ 2.58
HDAC4-217ENST00000553145 ABCC10Q5T3U5 1492 aa31.19■■■□□ 2.58
HDAC4-217ENST00000553145 PLB1Q6P1J6 1458 aa31.17■■■□□ 2.58
HDAC4-217ENST00000553145 DIP2BQ9P265 1576 aa31.17■■■□□ 2.58
HDAC4-217ENST00000553145 KDM5BQ9UGL1 1544 aa31.14■■■□□ 2.58
HDAC4-217ENST00000553145 P3H3Q8IVL6 736 aa31.14■■■□□ 2.58
HDAC4-217ENST00000553145 ABCA8O94911 1581 aa31.13■■■□□ 2.57
HDAC4-217ENST00000553145 EHMT2Q96KQ7 1210 aa31.11■■■□□ 2.57
HDAC4-217ENST00000553145 ZCCHC11Q5TAX3 1644 aaKnown RBP31.1■■■□□ 2.57
HDAC4-217ENST00000553145 ASXL2Q76L83 1435 aa31.09■■■□□ 2.57
HDAC4-217ENST00000553145 FAM69CQ0P6D2 419 aa31.09■■■□□ 2.57
HDAC4-217ENST00000553145 RANGAP1P46060 587 aaPredicted RBP31.07■■■□□ 2.56
HDAC4-217ENST00000553145 UBTFP17480 764 aaKnown RBP31■■■□□ 2.55
HDAC4-217ENST00000553145 FHOD3Q2V2M9 1422 aa30.99■■■□□ 2.55
HDAC4-217ENST00000553145 EFCAB5A4FU69 1503 aa30.98■■■□□ 2.55
HDAC4-217ENST00000553145 GLI2P10070 1586 aa30.92■■■□□ 2.54
HDAC4-217ENST00000553145 RAPGEF6Q8TEU7 1601 aa30.91■■■□□ 2.54
HDAC4-217ENST00000553145 EPRSP07814 1512 aaKnown RBP30.91■■■□□ 2.54
HDAC4-217ENST00000553145 WDR7Q9Y4E6 1490 aa30.89■■■□□ 2.54
HDAC4-217ENST00000553145 TSPOAP1O95153 1857 aa30.89■■■□□ 2.53
HDAC4-217ENST00000553145 ARID3CA6NKF2 412 aa30.86■■■□□ 2.53
HDAC4-217ENST00000553145 ATP10BO94823 1461 aa30.86■■■□□ 2.53
HDAC4-217ENST00000553145 ARHGAP35Q9NRY4 1499 aa30.82■■■□□ 2.53
HDAC4-217ENST00000553145 NUP153P49790 1475 aaKnown RBP30.82■■■□□ 2.52
HDAC4-217ENST00000553145 PPRC1Q5VV67 1664 aaKnown RBP30.81■■■□□ 2.52
HDAC4-217ENST00000553145 MAP3K4Q9Y6R4 1608 aa30.8■■■□□ 2.52
HDAC4-217ENST00000553145 KCNH8Q96L42 1107 aa30.71■■■□□ 2.51
HDAC4-217ENST00000553145 KDM6BO15054 1643 aa30.69■■■□□ 2.5
HDAC4-217ENST00000553145 FMN1Q68DA7 1419 aa30.66■■■□□ 2.5
HDAC4-217ENST00000553145 CFAP43Q8NDM7 1665 aa30.65■■■□□ 2.5
HDAC4-217ENST00000553145 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.64■■■□□ 2.5
HDAC4-217ENST00000553145 HNRNPUL2Q1KMD3 747 aaKnown RBP30.64■■■□□ 2.5
HDAC4-217ENST00000553145 CD109Q6YHK3 1445 aa30.61■■■□□ 2.49
HDAC4-217ENST00000553145 TEX14Q8IWB6 1497 aa30.61■■■□□ 2.49
HDAC4-217ENST00000553145 CDK13Q14004 1512 aaKnown RBP30.6■■■□□ 2.49
HDAC4-217ENST00000553145 HECW1Q76N89 1606 aa30.58■■■□□ 2.49
HDAC4-217ENST00000553145 MAGI3Q5TCQ9 1506 aa30.57■■■□□ 2.49
HDAC4-217ENST00000553145 ABCA9Q8IUA7 1624 aa30.56■■■□□ 2.48
HDAC4-217ENST00000553145 COL17A1Q9UMD9 1497 aaPredicted RBP30.54■■■□□ 2.48
HDAC4-217ENST00000553145 CLIP1P30622 1438 aa30.54■■■□□ 2.48
HDAC4-217ENST00000553145 ATP1B4Q9UN42 357 aaPredicted RBP30.5■■■□□ 2.47
HDAC4-217ENST00000553145 PLEKHD1A6NEE1 506 aa30.49■■■□□ 2.47
HDAC4-217ENST00000553145 PCF11O94913 1555 aaKnown RBP30.49■■■□□ 2.47
HDAC4-217ENST00000553145 LRRIQ1Q96JM4 1722 aa30.47■■■□□ 2.47
HDAC4-217ENST00000553145 CASKIN1Q8WXD9 1431 aa30.43■■■□□ 2.46
HDAC4-217ENST00000553145 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.41■■■□□ 2.46
HDAC4-217ENST00000553145 TTC37Q6PGP7 1564 aa30.39■■■□□ 2.46
HDAC4-217ENST00000553145 CEP162Q5TB80 1403 aa30.38■■■□□ 2.45
HDAC4-217ENST00000553145 LOC105371045A0A1W2PR82 267 aa30.36■■■□□ 2.45
HDAC4-217ENST00000553145 FYCO1Q9BQS8 1478 aa30.35■■■□□ 2.45
HDAC4-217ENST00000553145 ARAP3Q8WWN8 1544 aa30.32■■■□□ 2.44
HDAC4-217ENST00000553145 CCDC18Q5T9S5 1454 aa30.31■■■□□ 2.44
HDAC4-217ENST00000553145 CDK11AQ9UQ88 783 aaPredicted RBP30.3■■■□□ 2.44
HDAC4-217ENST00000553145 NEO1Q92859 1461 aa30.3■■■□□ 2.44
HDAC4-217ENST00000553145 TROQ12816 1431 aaPredicted RBP30.3■■■□□ 2.44
HDAC4-217ENST00000553145 KIF14Q15058 1648 aa30.29■■■□□ 2.44
HDAC4-217ENST00000553145 PHLDB1Q86UU1 1377 aa30.27■■■□□ 2.44
HDAC4-217ENST00000553145 FANCAO15360 1455 aa30.22■■■□□ 2.43
HDAC4-217ENST00000553145 PLCH2O75038 1416 aa30.19■■■□□ 2.42
HDAC4-217ENST00000553145 CFAP74Q9C0B2 1584 aa30.19■■■□□ 2.42
HDAC4-217ENST00000553145 FRMPD1Q5SYB0 1578 aa30.18■■■□□ 2.42
HDAC4-217ENST00000553145 MYO5CQ9NQX4 1742 aa30.17■■■□□ 2.42
HDAC4-217ENST00000553145 AKNAQ7Z591 1439 aa30.17■■■□□ 2.42
HDAC4-217ENST00000553145 RAPGEF3O95398 923 aa30.15■■■□□ 2.42
HDAC4-217ENST00000553145 KDM4FA0A1W2PPD8 638 aa30.09■■■□□ 2.41
HDAC4-217ENST00000553145 DENND4BO75064 1496 aaPredicted RBP30.09■■■□□ 2.41
HDAC4-217ENST00000553145 RICTORQ6R327 1708 aa30.09■■■□□ 2.41
HDAC4-217ENST00000553145 AEBP2Q6ZN18 517 aaPredicted RBP30.09■■■□□ 2.41
HDAC4-217ENST00000553145 ADGRL1O94910 1474 aa30.06■■■□□ 2.4
HDAC4-217ENST00000553145 ARHGAP5Q13017 1502 aa30.05■■■□□ 2.4
HDAC4-217ENST00000553145 CDC42BPBQ9Y5S2 1711 aa30.04■■■□□ 2.4
HDAC4-217ENST00000553145 PREX2Q70Z35 1606 aa30.04■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms