RNA–Protein interactions for RNA: ENST00000552773.1

RFX4-210, Transcript of regulatory factor X4, humanhuman

TSL 1 (best)

Gene RFX4, Length 1,659 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-210ENST00000552773 CCNB3Q8WWL7 1395 aa15.43■□□□□ 0.06
RFX4-210ENST00000552773 ABCA5Q8WWZ7 1642 aa15.43■□□□□ 0.06
RFX4-210ENST00000552773 GAPVD1Q14C86 1478 aa15.42■□□□□ 0.06
RFX4-210ENST00000552773 FYCO1Q9BQS8 1478 aa15.42■□□□□ 0.06
RFX4-210ENST00000552773 KANK4Q5T7N3 995 aaPredicted RBP15.38■□□□□ 0.05
RFX4-210ENST00000552773 CASKIN1Q8WXD9 1431 aa15.38■□□□□ 0.05
RFX4-210ENST00000552773 LRRC9Q6ZRR7 1453 aa15.38■□□□□ 0.05
RFX4-210ENST00000552773 CFAP43Q8NDM7 1665 aa15.37■□□□□ 0.05
RFX4-210ENST00000552773 MRC2Q9UBG0 1479 aa15.36■□□□□ 0.05
RFX4-210ENST00000552773 ZNF316A6NFI3 1004 aaPredicted RBP15.35■□□□□ 0.05
RFX4-210ENST00000552773 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.34■□□□□ 0.05
RFX4-210ENST00000552773 KIF21AQ7Z4S6 1674 aa15.34■□□□□ 0.05
RFX4-210ENST00000552773 THOC2Q8NI27 1593 aaKnown RBP15.33■□□□□ 0.04
RFX4-210ENST00000552773 DIEXFQ68CQ4 756 aaKnown RBP15.32■□□□□ 0.04
RFX4-210ENST00000552773 TARBP1Q13395 1621 aaKnown RBP15.31■□□□□ 0.04
RFX4-210ENST00000552773 PCF11O94913 1555 aaKnown RBP15.31■□□□□ 0.04
RFX4-210ENST00000552773 TDRD9Q8NDG6 1382 aaKnown RBP15.3■□□□□ 0.04
RFX4-210ENST00000552773 SAMD9Q5K651 1589 aa15.29■□□□□ 0.04
RFX4-210ENST00000552773 IFT140Q96RY7 1462 aa15.28■□□□□ 0.04
RFX4-210ENST00000552773 FHOD3Q2V2M9 1422 aa15.27■□□□□ 0.03
RFX4-210ENST00000552773 DHX57Q6P158 1386 aaKnown RBP15.27■□□□□ 0.03
RFX4-210ENST00000552773 GRIN2BQ13224 1484 aa15.26■□□□□ 0.03
RFX4-210ENST00000552773 CCDC18Q5T9S5 1454 aa15.24■□□□□ 0.03
RFX4-210ENST00000552773 PBRM1Q86U86 1689 aa15.24■□□□□ 0.03
RFX4-210ENST00000552773 ATP1B4Q9UN42 357 aaPredicted RBP15.22■□□□□ 0.03
RFX4-210ENST00000552773 WDR62O43379 1518 aa15.22■□□□□ 0.03
RFX4-210ENST00000552773 SETD5Q9C0A6 1442 aa15.22■□□□□ 0.03
RFX4-210ENST00000552773 CENPBP07199 599 aaPredicted RBP15.22■□□□□ 0.03
RFX4-210ENST00000552773 ACIN1Q9UKV3 1341 aaKnown RBP15.21■□□□□ 0.03
RFX4-210ENST00000552773 MTUS2Q5JR59 1369 aa15.21■□□□□ 0.03
RFX4-210ENST00000552773 SNAPC4Q5SXM2 1469 aa15.21■□□□□ 0.02
RFX4-210ENST00000552773 ADAMTS12P58397 1594 aa15.2■□□□□ 0.02
RFX4-210ENST00000552773 P3H3Q8IVL6 736 aa15.2■□□□□ 0.02
RFX4-210ENST00000552773 TIMELESSQ9UNS1 1208 aa15.19■□□□□ 0.02
RFX4-210ENST00000552773 IQGAP2Q13576 1575 aa15.18■□□□□ 0.02
RFX4-210ENST00000552773 PHLDB1Q86UU1 1377 aa15.18■□□□□ 0.02
RFX4-210ENST00000552773 EHBP1L1Q8N3D4 1523 aa15.18■□□□□ 0.02
RFX4-210ENST00000552773 HECW1Q76N89 1606 aa15.16■□□□□ 0.02
RFX4-210ENST00000552773 FAM50AQ14320 339 aaKnown RBP15.16■□□□□ 0.02
RFX4-210ENST00000552773 RAB3GAP2Q9H2M9 1393 aa15.15■□□□□ 0.02
RFX4-210ENST00000552773 SUPT6HQ7KZ85 1726 aaKnown RBP15.15■□□□□ 0.02
RFX4-210ENST00000552773 UGGT2Q9NYU1 1516 aa15.13■□□□□ 0.01
RFX4-210ENST00000552773 FGD6Q6ZV73 1430 aa15.13■□□□□ 0.01
RFX4-210ENST00000552773 ERCC6Q03468 1493 aa15.12■□□□□ 0.01
RFX4-210ENST00000552773 ITGAEP38570 1179 aa15.12■□□□□ 0.01
RFX4-210ENST00000552773 KIAA0586Q9BVV6 1533 aa15.11■□□□□ 0.01
RFX4-210ENST00000552773 MAGI1Q96QZ7 1491 aaPredicted RBP15.1■□□□□ 0.01
RFX4-210ENST00000552773 MYOM3Q5VTT5 1437 aa15.1■□□□□ 0.01
RFX4-210ENST00000552773 DNAJC5BQ9UF47 199 aa15.09■□□□□ 0.01
RFX4-210ENST00000552773 NCOA2Q15596 1464 aa15.07■□□□□ 0
RFX4-210ENST00000552773 CDK11AQ9UQ88 783 aaPredicted RBP15.06■□□□□ 0
RFX4-210ENST00000552773 MIA2Q96PC5 1412 aa15.05■□□□□ 0
RFX4-210ENST00000552773 GRIN2AQ12879 1464 aa15.03■□□□□ -0
RFX4-210ENST00000552773 ARHGEF11O15085 1522 aa15.03■□□□□ -0
RFX4-210ENST00000552773 HFM1A2PYH4 1435 aa15.03■□□□□ -0
RFX4-210ENST00000552773 EPRSP07814 1512 aaKnown RBP15.03■□□□□ -0
RFX4-210ENST00000552773 EIF4G3O43432 1585 aaKnown RBP15.02□□□□□ -0.01
RFX4-210ENST00000552773 AKNAQ7Z591 1439 aa15.01□□□□□ -0.01
RFX4-210ENST00000552773 SYNJ2O15056 1496 aa15.01□□□□□ -0.01
RFX4-210ENST00000552773 TCOF1Q13428 1488 aaKnown RBP15.01□□□□□ -0.01
RFX4-210ENST00000552773 MAPKBP1O60336 1514 aa14.99□□□□□ -0.01
RFX4-210ENST00000552773 KIAA0556O60303 1618 aa14.99□□□□□ -0.01
RFX4-210ENST00000552773 CARMIL2Q6F5E8 1435 aa14.99□□□□□ -0.01
RFX4-210ENST00000552773 ZNF608Q9ULD9 1512 aaPredicted RBP14.99□□□□□ -0.01
RFX4-210ENST00000552773 PTPN23Q9H3S7 1636 aa14.98□□□□□ -0.01
RFX4-210ENST00000552773 UACAQ9BZF9 1416 aa14.98□□□□□ -0.01
RFX4-210ENST00000552773 LRRIQ1Q96JM4 1722 aa14.97□□□□□ -0.01
RFX4-210ENST00000552773 CHMP7Q8WUX9 453 aaPredicted RBP14.97□□□□□ -0.01
RFX4-210ENST00000552773 RAPGEF6Q8TEU7 1601 aa14.93□□□□□ -0.02
RFX4-210ENST00000552773 DISP1Q96F81 1524 aa14.92□□□□□ -0.02
RFX4-210ENST00000552773 NAIPQ13075 1403 aa14.91□□□□□ -0.02
RFX4-210ENST00000552773 NUP160Q12769 1436 aa14.9□□□□□ -0.02
RFX4-210ENST00000552773 ROCK1Q13464 1354 aa14.89□□□□□ -0.03
RFX4-210ENST00000552773 TONSLQ96HA7 1378 aa14.89□□□□□ -0.03
RFX4-210ENST00000552773 GCC2Q8IWJ2 1684 aa14.89□□□□□ -0.03
RFX4-210ENST00000552773 MAGI3Q5TCQ9 1506 aa14.88□□□□□ -0.03
RFX4-210ENST00000552773 MIER1Q8N108 512 aa14.87□□□□□ -0.03
RFX4-210ENST00000552773 TROQ12816 1431 aaPredicted RBP14.85□□□□□ -0.03
RFX4-210ENST00000552773 CDK13Q14004 1512 aaKnown RBP14.85□□□□□ -0.03
RFX4-210ENST00000552773 NUP153P49790 1475 aaKnown RBP14.85□□□□□ -0.03
RFX4-210ENST00000552773 ITSN2Q9NZM3 1697 aa14.85□□□□□ -0.03
RFX4-210ENST00000552773 SCAF1Q9H7N4 1312 aaKnown RBP14.84□□□□□ -0.03
RFX4-210ENST00000552773 CEP170Q5SW79 1584 aa14.84□□□□□ -0.03
RFX4-210ENST00000552773 PPP1R15AO75807 674 aaPredicted RBP14.84□□□□□ -0.03
RFX4-210ENST00000552773 NEUROD1Q13562 356 aa14.84□□□□□ -0.03
RFX4-210ENST00000552773 PTPRKQ15262 1439 aa14.83□□□□□ -0.03
RFX4-210ENST00000552773 JPH4Q96JJ6 628 aa14.83□□□□□ -0.04
RFX4-210ENST00000552773 ADCY10Q96PN6 1610 aa14.81□□□□□ -0.04
RFX4-210ENST00000552773 PELP1Q8IZL8 1130 aaKnown RBP14.81□□□□□ -0.04
RFX4-210ENST00000552773 DNMT1P26358 1616 aaKnown RBP14.8□□□□□ -0.04
RFX4-210ENST00000552773 DAPK1P53355 1430 aa14.79□□□□□ -0.04
RFX4-210ENST00000552773 FBLN2P98095 1184 aa14.79□□□□□ -0.04
RFX4-210ENST00000552773 SIN3AQ96ST3 1273 aa14.78□□□□□ -0.04
RFX4-210ENST00000552773 PLEKHD1A6NEE1 506 aa14.77□□□□□ -0.04
RFX4-210ENST00000552773 TRIM52Q96A61 297 aa14.75□□□□□ -0.05
RFX4-210ENST00000552773 CFDP1Q9UEE9 299 aaPredicted RBP14.75□□□□□ -0.05
RFX4-210ENST00000552773 ABCA8O94911 1581 aa14.74□□□□□ -0.05
RFX4-210ENST00000552773 RRP7BPQ9NSQ0 103 aa14.74□□□□□ -0.05
RFX4-210ENST00000552773 KIF14Q15058 1648 aa14.73□□□□□ -0.05
RFX4-210ENST00000552773 ABCC5O15440 1437 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms