RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SYNJ1O43426 1573 aa8.14□□□□□ -1.11
LIMA1-212ENST00000552491 PABPN1Q86U42 306 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMA1-212ENST00000552491 MIER1Q8N108 512 aa8.13□□□□□ -1.11
LIMA1-212ENST00000552491 YTHDC1Q96MU7 727 aaKnown RBP8.13□□□□□ -1.11
LIMA1-212ENST00000552491 ATF5Q9Y2D1 282 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-212ENST00000552491 BICRAQ9NZM4 1560 aa8.11□□□□□ -1.11
LIMA1-212ENST00000552491 CEP164Q9UPV0 1460 aa8.1□□□□□ -1.11
LIMA1-212ENST00000552491 KIF21BO75037 1637 aa8.1□□□□□ -1.11
LIMA1-212ENST00000552491 CLIP1P30622 1438 aa8.1□□□□□ -1.11
LIMA1-212ENST00000552491 OSCARQ8IYS5 282 aa8.1□□□□□ -1.11
LIMA1-212ENST00000552491 PITPNM1O00562 1244 aa8.09□□□□□ -1.11
LIMA1-212ENST00000552491 PEG3Q9GZU2 1588 aa8.09□□□□□ -1.11
LIMA1-212ENST00000552491 RAPGEF2Q9Y4G8 1499 aa8.08□□□□□ -1.12
LIMA1-212ENST00000552491 VPS8Q8N3P4 1428 aa8.08□□□□□ -1.12
LIMA1-212ENST00000552491 EVX2Q03828 476 aa8.08□□□□□ -1.12
LIMA1-212ENST00000552491 RANGAP1P46060 587 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-212ENST00000552491 FXR2P51116 673 aaKnown RBP eCLIP8.06□□□□□ -1.12
LIMA1-212ENST00000552491 BAZ1BQ9UIG0 1483 aaKnown RBP8.04□□□□□ -1.12
LIMA1-212ENST00000552491 ZBTB12Q9Y330 459 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-212ENST00000552491 ATAD2BQ9ULI0 1458 aa8.03□□□□□ -1.12
LIMA1-212ENST00000552491 MYT1Q01538 1121 aa8□□□□□ -1.13
LIMA1-212ENST00000552491 DHX57Q6P158 1386 aaKnown RBP8□□□□□ -1.13
LIMA1-212ENST00000552491 KANK4Q5T7N3 995 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-212ENST00000552491 TOP2BQ02880 1626 aa7.99□□□□□ -1.13
LIMA1-212ENST00000552491 ARAP1Q96P48 1450 aa7.98□□□□□ -1.13
LIMA1-212ENST00000552491 PRXQ9BXM0 1461 aa7.96□□□□□ -1.14
LIMA1-212ENST00000552491 BIVM-ERCC5R4GMW8 1640 aa7.95□□□□□ -1.14
LIMA1-212ENST00000552491 CLSPNQ9HAW4 1339 aa7.94□□□□□ -1.14
LIMA1-212ENST00000552491 ERICH3Q5RHP9 1530 aa7.94□□□□□ -1.14
LIMA1-212ENST00000552491 RRBP1Q9P2E9 1410 aaKnown RBP7.92□□□□□ -1.14
LIMA1-212ENST00000552491 FOXD4L1Q9NU39 408 aa7.91□□□□□ -1.14
LIMA1-212ENST00000552491 CUX1P39880 1505 aa7.91□□□□□ -1.14
LIMA1-212ENST00000552491 SUPT16HQ9Y5B9 1047 aaKnown RBP7.9□□□□□ -1.14
LIMA1-212ENST00000552491 CUX2O14529 1486 aa7.89□□□□□ -1.15
LIMA1-212ENST00000552491 ARHGAP35Q9NRY4 1499 aa7.89□□□□□ -1.15
LIMA1-212ENST00000552491 KCNH8Q96L42 1107 aa7.88□□□□□ -1.15
LIMA1-212ENST00000552491 CCNB3Q8WWL7 1395 aa7.88□□□□□ -1.15
LIMA1-212ENST00000552491 PRKAR2AP13861 404 aaKnown RBP7.87□□□□□ -1.15
LIMA1-212ENST00000552491 ITGAEP38570 1179 aa7.87□□□□□ -1.15
LIMA1-212ENST00000552491 KIF27Q86VH2 1401 aa7.86□□□□□ -1.15
LIMA1-212ENST00000552491 MAPKBP1O60336 1514 aa7.85□□□□□ -1.15
LIMA1-212ENST00000552491 RAB3GAP2Q9H2M9 1393 aa7.84□□□□□ -1.15
LIMA1-212ENST00000552491 CLEC11AQ9Y240 323 aa7.84□□□□□ -1.16
LIMA1-212ENST00000552491 SLC4A1APQ9BWU0 796 aaKnown RBP7.83□□□□□ -1.16
LIMA1-212ENST00000552491 NCAPD3P42695 1498 aa7.83□□□□□ -1.16
LIMA1-212ENST00000552491 LHX8Q68G74 356 aa7.83□□□□□ -1.16
LIMA1-212ENST00000552491 HMGXB3Q12766 1538 aa7.82□□□□□ -1.16
LIMA1-212ENST00000552491 TSHZ2Q9NRE2 1034 aa7.82□□□□□ -1.16
LIMA1-212ENST00000552491 C19orf67A6NJJ6 358 aa7.82□□□□□ -1.16
LIMA1-212ENST00000552491 GABBR2O75899 941 aa7.82□□□□□ -1.16
LIMA1-212ENST00000552491 CFTRP13569 1480 aa7.82□□□□□ -1.16
LIMA1-212ENST00000552491 TIAM1Q13009 1591 aa7.81□□□□□ -1.16
LIMA1-212ENST00000552491 IGF1RP08069 1367 aa7.81□□□□□ -1.16
LIMA1-212ENST00000552491 SPDYE2BA6NHP3 402 aa7.8□□□□□ -1.16
LIMA1-212ENST00000552491 SPDYE6P0CI01 402 aa7.8□□□□□ -1.16
LIMA1-212ENST00000552491 SPDYE2Q495Y8 402 aa7.8□□□□□ -1.16
LIMA1-212ENST00000552491 SIN3AQ96ST3 1273 aa7.8□□□□□ -1.16
LIMA1-212ENST00000552491 WDR97A6NE52 1622 aa7.8□□□□□ -1.16
LIMA1-212ENST00000552491 PHLDB1Q86UU1 1377 aa7.8□□□□□ -1.16
LIMA1-212ENST00000552491 SETD5Q9C0A6 1442 aa7.78□□□□□ -1.16
LIMA1-212ENST00000552491 LRRC9Q6ZRR7 1453 aa7.78□□□□□ -1.16
LIMA1-212ENST00000552491 CC2D2AQ9P2K1 1620 aa7.77□□□□□ -1.16
LIMA1-212ENST00000552491 DDX10Q13206 875 aaKnown RBP7.77□□□□□ -1.16
LIMA1-212ENST00000552491 MAP3K1Q13233 1512 aa7.77□□□□□ -1.17
LIMA1-212ENST00000552491 SPDYE1Q8NFV5 336 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-212ENST00000552491 BCANQ96GW7 911 aa7.76□□□□□ -1.17
LIMA1-212ENST00000552491 HIRIP3Q9BW71 556 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-212ENST00000552491 CARMIL1Q5VZK9 1371 aa7.76□□□□□ -1.17
LIMA1-212ENST00000552491 ZBTB22O15209 634 aa7.75□□□□□ -1.17
LIMA1-212ENST00000552491 PPP1R15AO75807 674 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-212ENST00000552491 FAM50AQ14320 339 aaKnown RBP7.75□□□□□ -1.17
LIMA1-212ENST00000552491 CHADLQ6NUI6 762 aa7.75□□□□□ -1.17
LIMA1-212ENST00000552491 P3H3Q8IVL6 736 aa7.75□□□□□ -1.17
LIMA1-212ENST00000552491 PRDM2Q13029 1718 aa7.74□□□□□ -1.17
LIMA1-212ENST00000552491 PCF11O94913 1555 aaKnown RBP7.74□□□□□ -1.17
LIMA1-212ENST00000552491 FGD5Q6ZNL6 1462 aa7.73□□□□□ -1.17
LIMA1-212ENST00000552491 CFAP43Q8NDM7 1665 aa7.73□□□□□ -1.17
LIMA1-212ENST00000552491 FKBP8Q14318 412 aa7.73□□□□□ -1.17
LIMA1-212ENST00000552491 FBLN2P98095 1184 aa7.72□□□□□ -1.17
LIMA1-212ENST00000552491 ATP1B4Q9UN42 357 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-212ENST00000552491 FHOD3Q2V2M9 1422 aa7.71□□□□□ -1.18
LIMA1-212ENST00000552491 CADPSQ9ULU8 1353 aa7.7□□□□□ -1.18
LIMA1-212ENST00000552491 FHAD1B1AJZ9 1412 aa7.7□□□□□ -1.18
LIMA1-212ENST00000552491 MKRN4PQ13434 485 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-212ENST00000552491 TRIM52Q96A61 297 aa7.7□□□□□ -1.18
LIMA1-212ENST00000552491 ANP32EQ9BTT0 268 aa7.7□□□□□ -1.18
LIMA1-212ENST00000552491 ZNF692Q9BU19 519 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-212ENST00000552491 TIMELESSQ9UNS1 1208 aa7.69□□□□□ -1.18
LIMA1-212ENST00000552491 PLSCR2Q9NRY7 297 aa7.68□□□□□ -1.18
LIMA1-212ENST00000552491 POTEIP0CG38 1075 aa7.68□□□□□ -1.18
LIMA1-212ENST00000552491 PTPRKQ15262 1439 aa7.67□□□□□ -1.18
LIMA1-212ENST00000552491 SSUH2Q9Y2M2 353 aa7.67□□□□□ -1.18
LIMA1-212ENST00000552491 RAD54L2Q9Y4B4 1467 aa7.67□□□□□ -1.18
LIMA1-212ENST00000552491 CCER2I3L3R5 266 aa7.66□□□□□ -1.18
LIMA1-212ENST00000552491 FYCO1Q9BQS8 1478 aa7.66□□□□□ -1.18
LIMA1-212ENST00000552491 CASKIN1Q8WXD9 1431 aa7.66□□□□□ -1.18
LIMA1-212ENST00000552491 ANP32CO43423 234 aa7.65□□□□□ -1.18
LIMA1-212ENST00000552491 FGD6Q6ZV73 1430 aa7.65□□□□□ -1.19
LIMA1-212ENST00000552491 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.65□□□□□ -1.19
LIMA1-212ENST00000552491 ATXN8OSP0DMR3 200 aa7.65□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms