RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 KIAA0586Q9BVV6 1533 aa15.61■□□□□ 0.09
LIMA1-211ENST00000552338 CEP170Q5SW79 1584 aa15.61■□□□□ 0.09
LIMA1-211ENST00000552338 LOC105371045A0A1W2PR82 267 aa15.58■□□□□ 0.08
LIMA1-211ENST00000552338 CLASP1Q7Z460 1538 aa15.56■□□□□ 0.08
LIMA1-211ENST00000552338 IQGAP2Q13576 1575 aa15.54■□□□□ 0.08
LIMA1-211ENST00000552338 SHROOM2Q13796 1616 aa15.54■□□□□ 0.08
LIMA1-211ENST00000552338 UBTFP17480 764 aaKnown RBP15.53■□□□□ 0.08
LIMA1-211ENST00000552338 FBLN2P98095 1184 aa15.53■□□□□ 0.08
LIMA1-211ENST00000552338 UGGT2Q9NYU1 1516 aa15.53■□□□□ 0.08
LIMA1-211ENST00000552338 OSCARQ8IYS5 282 aa15.52■□□□□ 0.08
LIMA1-211ENST00000552338 SAMD9Q5K651 1589 aa15.48■□□□□ 0.07
LIMA1-211ENST00000552338 JPH4Q96JJ6 628 aa15.47■□□□□ 0.07
LIMA1-211ENST00000552338 EFCAB5A4FU69 1503 aa15.47■□□□□ 0.07
LIMA1-211ENST00000552338 CEP162Q5TB80 1403 aa15.44■□□□□ 0.06
LIMA1-211ENST00000552338 DISP1Q96F81 1524 aa15.43■□□□□ 0.06
LIMA1-211ENST00000552338 ARHGAP35Q9NRY4 1499 aa15.42■□□□□ 0.06
LIMA1-211ENST00000552338 CLIP1P30622 1438 aa15.41■□□□□ 0.06
LIMA1-211ENST00000552338 KIAA0556O60303 1618 aa15.4■□□□□ 0.06
LIMA1-211ENST00000552338 EHMT2Q96KQ7 1210 aa15.39■□□□□ 0.05
LIMA1-211ENST00000552338 CARMIL2Q6F5E8 1435 aa15.38■□□□□ 0.05
LIMA1-211ENST00000552338 FOXD1Q16676 465 aa15.38■□□□□ 0.05
LIMA1-211ENST00000552338 PRG4Q92954 1404 aaPredicted RBP15.36■□□□□ 0.05
LIMA1-211ENST00000552338 ARAP1Q96P48 1450 aa15.33■□□□□ 0.05
LIMA1-211ENST00000552338 ERCC6L2Q5T890 1561 aa15.3■□□□□ 0.04
LIMA1-211ENST00000552338 FMN1Q68DA7 1419 aa15.29■□□□□ 0.04
LIMA1-211ENST00000552338 FHOD3Q2V2M9 1422 aa15.27■□□□□ 0.04
LIMA1-211ENST00000552338 VPS8Q8N3P4 1428 aa15.27■□□□□ 0.04
LIMA1-211ENST00000552338 ARHGEF11O15085 1522 aa15.27■□□□□ 0.03
LIMA1-211ENST00000552338 ABCA8O94911 1581 aa15.24■□□□□ 0.03
LIMA1-211ENST00000552338 PTPRGP23470 1445 aa15.24■□□□□ 0.03
LIMA1-211ENST00000552338 RIMBP3CA6NJZ7 1639 aa15.23■□□□□ 0.03
LIMA1-211ENST00000552338 RIMBP3BA6NNM3 1639 aa15.23■□□□□ 0.03
LIMA1-211ENST00000552338 RIMBP3Q9UFD9 1639 aa15.23■□□□□ 0.03
LIMA1-211ENST00000552338 CASKIN1Q8WXD9 1431 aa15.23■□□□□ 0.03
LIMA1-211ENST00000552338 UHRF1BP1LA0JNW5 1464 aa15.21■□□□□ 0.03
LIMA1-211ENST00000552338 RANGAP1P46060 587 aaPredicted RBP15.21■□□□□ 0.03
LIMA1-211ENST00000552338 P3H3Q8IVL6 736 aa15.21■□□□□ 0.03
LIMA1-211ENST00000552338 RAPGEF6Q8TEU7 1601 aa15.21■□□□□ 0.02
LIMA1-211ENST00000552338 FYCO1Q9BQS8 1478 aa15.2■□□□□ 0.02
LIMA1-211ENST00000552338 MAP3K1Q13233 1512 aa15.2■□□□□ 0.02
LIMA1-211ENST00000552338 UACAQ9BZF9 1416 aa15.18■□□□□ 0.02
LIMA1-211ENST00000552338 PCF11O94913 1555 aaKnown RBP15.17■□□□□ 0.02
LIMA1-211ENST00000552338 PLB1Q6P1J6 1458 aa15.16■□□□□ 0.02
LIMA1-211ENST00000552338 DNAJC5Q9H3Z4 198 aa15.16■□□□□ 0.02
LIMA1-211ENST00000552338 HECW1Q76N89 1606 aa15.16■□□□□ 0.02
LIMA1-211ENST00000552338 ABCC2Q92887 1545 aa15.16■□□□□ 0.02
LIMA1-211ENST00000552338 LRRIQ1Q96JM4 1722 aa15.15■□□□□ 0.02
LIMA1-211ENST00000552338 NUP153P49790 1475 aaKnown RBP15.14■□□□□ 0.01
LIMA1-211ENST00000552338 KDM5BQ9UGL1 1544 aa15.12■□□□□ 0.01
LIMA1-211ENST00000552338 CCDC18Q5T9S5 1454 aa15.12■□□□□ 0.01
LIMA1-211ENST00000552338 ADCY10Q96PN6 1610 aa15.11■□□□□ 0.01
LIMA1-211ENST00000552338 EPRSP07814 1512 aaKnown RBP15.11■□□□□ 0.01
LIMA1-211ENST00000552338 CFAP43Q8NDM7 1665 aa15.09■□□□□ 0.01
LIMA1-211ENST00000552338 ATP10BO94823 1461 aa15.08■□□□□ 0.01
LIMA1-211ENST00000552338 TIAM1Q13009 1591 aa15.08■□□□□ 0
LIMA1-211ENST00000552338 ZCCHC11Q5TAX3 1644 aaKnown RBP15.04■□□□□ -0
LIMA1-211ENST00000552338 CYB5RLQ6IPT4 315 aa15.02■□□□□ -0
LIMA1-211ENST00000552338 CDK13Q14004 1512 aaKnown RBP15.01□□□□□ -0.01
LIMA1-211ENST00000552338 LRRC9Q6ZRR7 1453 aa15.01□□□□□ -0.01
LIMA1-211ENST00000552338 TTBK1Q5TCY1 1321 aaPredicted RBP14.99□□□□□ -0.01
LIMA1-211ENST00000552338 MAPKBP1O60336 1514 aa14.99□□□□□ -0.01
LIMA1-211ENST00000552338 APLP2Q06481 763 aa14.99□□□□□ -0.01
LIMA1-211ENST00000552338 CDK11AQ9UQ88 783 aaPredicted RBP14.99□□□□□ -0.01
LIMA1-211ENST00000552338 MAGI3Q5TCQ9 1506 aa14.98□□□□□ -0.01
LIMA1-211ENST00000552338 EHBP1L1Q8N3D4 1523 aa14.98□□□□□ -0.01
LIMA1-211ENST00000552338 TROQ12816 1431 aaPredicted RBP14.97□□□□□ -0.01
LIMA1-211ENST00000552338 PLEKHD1A6NEE1 506 aa14.95□□□□□ -0.02
LIMA1-211ENST00000552338 KANK4Q5T7N3 995 aaPredicted RBP14.95□□□□□ -0.02
LIMA1-211ENST00000552338 ATP1B4Q9UN42 357 aaPredicted RBP14.95□□□□□ -0.02
LIMA1-211ENST00000552338 NPM1P06748 294 aaKnown RBP eCLIP14.94□□□□□ -0.02
LIMA1-211ENST00000552338 SUPT6HQ7KZ85 1726 aaKnown RBP14.93□□□□□ -0.02
LIMA1-211ENST00000552338 MTUS2Q5JR59 1369 aa14.93□□□□□ -0.02
LIMA1-211ENST00000552338 WDR7Q9Y4E6 1490 aa14.93□□□□□ -0.02
LIMA1-211ENST00000552338 ASXL2Q76L83 1435 aa14.92□□□□□ -0.02
LIMA1-211ENST00000552338 ABCC10Q5T3U5 1492 aa14.89□□□□□ -0.03
LIMA1-211ENST00000552338 GLI2P10070 1586 aa14.89□□□□□ -0.03
LIMA1-211ENST00000552338 KIF14Q15058 1648 aa14.88□□□□□ -0.03
LIMA1-211ENST00000552338 ABCA9Q8IUA7 1624 aa14.88□□□□□ -0.03
LIMA1-211ENST00000552338 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.87□□□□□ -0.03
LIMA1-211ENST00000552338 HNRNPUL2Q1KMD3 747 aaKnown RBP14.87□□□□□ -0.03
LIMA1-211ENST00000552338 NCOA2Q15596 1464 aa14.87□□□□□ -0.03
LIMA1-211ENST00000552338 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.86□□□□□ -0.03
LIMA1-211ENST00000552338 ARID3CA6NKF2 412 aa14.85□□□□□ -0.03
LIMA1-211ENST00000552338 ARAP3Q8WWN8 1544 aa14.85□□□□□ -0.03
LIMA1-211ENST00000552338 CDC42BPAQ5VT25 1732 aa14.83□□□□□ -0.04
LIMA1-211ENST00000552338 DIP2BQ9P265 1576 aa14.82□□□□□ -0.04
LIMA1-211ENST00000552338 ITSN2Q9NZM3 1697 aa14.82□□□□□ -0.04
LIMA1-211ENST00000552338 MIA2Q96PC5 1412 aa14.82□□□□□ -0.04
LIMA1-211ENST00000552338 GPATCH8Q9UKJ3 1502 aaKnown RBP14.82□□□□□ -0.04
LIMA1-211ENST00000552338 PHLDB1Q86UU1 1377 aa14.81□□□□□ -0.04
LIMA1-211ENST00000552338 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.81□□□□□ -0.04
LIMA1-211ENST00000552338 MYOM3Q5VTT5 1437 aa14.81□□□□□ -0.04
LIMA1-211ENST00000552338 MYO5CQ9NQX4 1742 aa14.8□□□□□ -0.04
LIMA1-211ENST00000552338 CDC42BPBQ9Y5S2 1711 aa14.8□□□□□ -0.04
LIMA1-211ENST00000552338 KIF13AQ9H1H9 1805 aa14.8□□□□□ -0.04
LIMA1-211ENST00000552338 RRBP1Q9P2E9 1410 aaKnown RBP14.8□□□□□ -0.04
LIMA1-211ENST00000552338 TTC37Q6PGP7 1564 aa14.8□□□□□ -0.04
LIMA1-211ENST00000552338 PREX2Q70Z35 1606 aa14.8□□□□□ -0.04
LIMA1-211ENST00000552338 MAP3K4Q9Y6R4 1608 aa14.8□□□□□ -0.04
LIMA1-211ENST00000552338 PLCH2O75038 1416 aa14.79□□□□□ -0.04
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