RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 CARMIL1Q5VZK9 1371 aa25.18■■□□□ 1.62
LINC00661-203ENST00000549131 KIAA0586Q9BVV6 1533 aa25.17■■□□□ 1.62
LINC00661-203ENST00000549131 TRHP20396 242 aaPredicted RBP25.15■■□□□ 1.62
LINC00661-203ENST00000549131 JPH4Q96JJ6 628 aa25.13■■□□□ 1.61
LINC00661-203ENST00000549131 IQGAP2Q13576 1575 aa25.08■■□□□ 1.61
LINC00661-203ENST00000549131 RAPGEF2Q9Y4G8 1499 aa25.05■■□□□ 1.6
LINC00661-203ENST00000549131 CTTNBP2Q8WZ74 1663 aa25.01■■□□□ 1.59
LINC00661-203ENST00000549131 ADCY10Q96PN6 1610 aa24.97■■□□□ 1.59
LINC00661-203ENST00000549131 CARMIL2Q6F5E8 1435 aa24.92■■□□□ 1.58
LINC00661-203ENST00000549131 KIF13AQ9H1H9 1805 aa24.91■■□□□ 1.58
LINC00661-203ENST00000549131 UGGT2Q9NYU1 1516 aa24.86■■□□□ 1.57
LINC00661-203ENST00000549131 KIAA0556O60303 1618 aa24.86■■□□□ 1.57
LINC00661-203ENST00000549131 DISP1Q96F81 1524 aa24.86■■□□□ 1.57
LINC00661-203ENST00000549131 PRXQ9BXM0 1461 aa24.85■■□□□ 1.57
LINC00661-203ENST00000549131 TNIKQ9UKE5 1360 aa24.84■■□□□ 1.57
LINC00661-203ENST00000549131 PTPRGP23470 1445 aa24.84■■□□□ 1.57
LINC00661-203ENST00000549131 MAPKBP1O60336 1514 aa24.83■■□□□ 1.57
LINC00661-203ENST00000549131 TTBK1Q5TCY1 1321 aaPredicted RBP24.83■■□□□ 1.56
LINC00661-203ENST00000549131 NPM1P06748 294 aaKnown RBP eCLIP24.79■■□□□ 1.56
LINC00661-203ENST00000549131 DIP2BQ9P265 1576 aa24.76■■□□□ 1.55
LINC00661-203ENST00000549131 EEA1Q15075 1411 aa24.74■■□□□ 1.55
LINC00661-203ENST00000549131 ABCC2Q92887 1545 aa24.71■■□□□ 1.55
LINC00661-203ENST00000549131 ABCC10Q5T3U5 1492 aa24.71■■□□□ 1.55
LINC00661-203ENST00000549131 GOLGA3Q08378 1498 aa24.7■■□□□ 1.55
LINC00661-203ENST00000549131 UHRF1BP1LA0JNW5 1464 aa24.69■■□□□ 1.54
LINC00661-203ENST00000549131 CSRNP3Q8WYN3 585 aa24.68■■□□□ 1.54
LINC00661-203ENST00000549131 UACAQ9BZF9 1416 aa24.68■■□□□ 1.54
LINC00661-203ENST00000549131 ZCCHC11Q5TAX3 1644 aaKnown RBP24.64■■□□□ 1.54
LINC00661-203ENST00000549131 TSPOAP1O95153 1857 aa24.64■■□□□ 1.54
LINC00661-203ENST00000549131 FAM69CQ0P6D2 419 aa24.61■■□□□ 1.53
LINC00661-203ENST00000549131 KIF21BO75037 1637 aa24.61■■□□□ 1.53
LINC00661-203ENST00000549131 FAM9AQ8IZU1 332 aaPredicted RBP24.6■■□□□ 1.53
LINC00661-203ENST00000549131 KDM5BQ9UGL1 1544 aa24.58■■□□□ 1.53
LINC00661-203ENST00000549131 ASXL2Q76L83 1435 aa24.58■■□□□ 1.53
LINC00661-203ENST00000549131 SAMD9Q5K651 1589 aa24.57■■□□□ 1.52
LINC00661-203ENST00000549131 PLB1Q6P1J6 1458 aa24.57■■□□□ 1.52
LINC00661-203ENST00000549131 ABCA8O94911 1581 aa24.55■■□□□ 1.52
LINC00661-203ENST00000549131 CHIC1Q5VXU3 224 aa24.55■■□□□ 1.52
LINC00661-203ENST00000549131 GLI2P10070 1586 aa24.5■■□□□ 1.51
LINC00661-203ENST00000549131 PPRC1Q5VV67 1664 aaKnown RBP24.46■■□□□ 1.51
LINC00661-203ENST00000549131 KDM6BO15054 1643 aa24.46■■□□□ 1.51
LINC00661-203ENST00000549131 P3H3Q8IVL6 736 aa24.45■■□□□ 1.5
LINC00661-203ENST00000549131 MAP3K4Q9Y6R4 1608 aa24.44■■□□□ 1.5
LINC00661-203ENST00000549131 EPRSP07814 1512 aaKnown RBP24.44■■□□□ 1.5
LINC00661-203ENST00000549131 WDR7Q9Y4E6 1490 aa24.43■■□□□ 1.5
LINC00661-203ENST00000549131 RAPGEF6Q8TEU7 1601 aa24.42■■□□□ 1.5
LINC00661-203ENST00000549131 RANGAP1P46060 587 aaPredicted RBP24.4■■□□□ 1.5
LINC00661-203ENST00000549131 EFCAB5A4FU69 1503 aa24.39■■□□□ 1.49
LINC00661-203ENST00000549131 FHOD3Q2V2M9 1422 aa24.36■■□□□ 1.49
LINC00661-203ENST00000549131 CFAP43Q8NDM7 1665 aa24.34■■□□□ 1.49
LINC00661-203ENST00000549131 EHMT2Q96KQ7 1210 aa24.34■■□□□ 1.49
LINC00661-203ENST00000549131 ARID3CA6NKF2 412 aa24.31■■□□□ 1.48
LINC00661-203ENST00000549131 TEX14Q8IWB6 1497 aa24.29■■□□□ 1.48
LINC00661-203ENST00000549131 ATP10BO94823 1461 aa24.27■■□□□ 1.48
LINC00661-203ENST00000549131 UBTFP17480 764 aaKnown RBP24.27■■□□□ 1.48
LINC00661-203ENST00000549131 NUP153P49790 1475 aaKnown RBP24.26■■□□□ 1.47
LINC00661-203ENST00000549131 KCNH8Q96L42 1107 aa24.22■■□□□ 1.47
LINC00661-203ENST00000549131 ABCA9Q8IUA7 1624 aa24.19■■□□□ 1.46
LINC00661-203ENST00000549131 CD109Q6YHK3 1445 aa24.18■■□□□ 1.46
LINC00661-203ENST00000549131 MAGI3Q5TCQ9 1506 aa24.17■■□□□ 1.46
LINC00661-203ENST00000549131 ARHGAP35Q9NRY4 1499 aa24.16■■□□□ 1.46
LINC00661-203ENST00000549131 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.16■■□□□ 1.46
LINC00661-203ENST00000549131 HNRNPUL2Q1KMD3 747 aaKnown RBP24.16■■□□□ 1.46
LINC00661-203ENST00000549131 HECW1Q76N89 1606 aa24.14■■□□□ 1.46
LINC00661-203ENST00000549131 AEBP2Q6ZN18 517 aaPredicted RBP24.12■■□□□ 1.45
LINC00661-203ENST00000549131 COL17A1Q9UMD9 1497 aaPredicted RBP24.12■■□□□ 1.45
LINC00661-203ENST00000549131 FMN1Q68DA7 1419 aa24.1■■□□□ 1.45
LINC00661-203ENST00000549131 CDK13Q14004 1512 aaKnown RBP24.1■■□□□ 1.45
LINC00661-203ENST00000549131 LRRIQ1Q96JM4 1722 aa24.04■■□□□ 1.44
LINC00661-203ENST00000549131 TTC37Q6PGP7 1564 aa24.02■■□□□ 1.44
LINC00661-203ENST00000549131 PCF11O94913 1555 aaKnown RBP24■■□□□ 1.43
LINC00661-203ENST00000549131 PLEKHD1A6NEE1 506 aa23.99■■□□□ 1.43
LINC00661-203ENST00000549131 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.99■■□□□ 1.43
LINC00661-203ENST00000549131 ATP1B4Q9UN42 357 aaPredicted RBP23.98■■□□□ 1.43
LINC00661-203ENST00000549131 ARAP3Q8WWN8 1544 aa23.97■■□□□ 1.43
LINC00661-203ENST00000549131 CFAP74Q9C0B2 1584 aa23.97■■□□□ 1.43
LINC00661-203ENST00000549131 NEO1Q92859 1461 aa23.95■■□□□ 1.42
LINC00661-203ENST00000549131 MYO5CQ9NQX4 1742 aa23.93■■□□□ 1.42
LINC00661-203ENST00000549131 CLIP1P30622 1438 aa23.92■■□□□ 1.42
LINC00661-203ENST00000549131 KIF14Q15058 1648 aa23.92■■□□□ 1.42
LINC00661-203ENST00000549131 PHLDB1Q86UU1 1377 aa23.91■■□□□ 1.42
LINC00661-203ENST00000549131 ADGRL1O94910 1474 aa23.9■■□□□ 1.42
LINC00661-203ENST00000549131 FRMPD1Q5SYB0 1578 aa23.9■■□□□ 1.42
LINC00661-203ENST00000549131 FANCAO15360 1455 aa23.87■■□□□ 1.41
LINC00661-203ENST00000549131 CASKIN1Q8WXD9 1431 aa23.87■■□□□ 1.41
LINC00661-203ENST00000549131 KDM4FA0A1W2PPD8 638 aa23.87■■□□□ 1.41
LINC00661-203ENST00000549131 CCDC18Q5T9S5 1454 aa23.87■■□□□ 1.41
LINC00661-203ENST00000549131 RICTORQ6R327 1708 aa23.86■■□□□ 1.41
LINC00661-203ENST00000549131 FYCO1Q9BQS8 1478 aa23.86■■□□□ 1.41
LINC00661-203ENST00000549131 CDK11AQ9UQ88 783 aaPredicted RBP23.83■■□□□ 1.41
LINC00661-203ENST00000549131 TROQ12816 1431 aaPredicted RBP23.83■■□□□ 1.4
LINC00661-203ENST00000549131 AKNAQ7Z591 1439 aa23.8■■□□□ 1.4
LINC00661-203ENST00000549131 RAPGEF3O95398 923 aa23.78■■□□□ 1.4
LINC00661-203ENST00000549131 DENND4BO75064 1496 aaPredicted RBP23.78■■□□□ 1.4
LINC00661-203ENST00000549131 ARHGEF40Q8TER5 1519 aa23.77■■□□□ 1.4
LINC00661-203ENST00000549131 PLCH2O75038 1416 aa23.76■■□□□ 1.39
LINC00661-203ENST00000549131 CEP162Q5TB80 1403 aa23.75■■□□□ 1.39
LINC00661-203ENST00000549131 ARHGAP5Q13017 1502 aa23.74■■□□□ 1.39
LINC00661-203ENST00000549131 PREX2Q70Z35 1606 aa23.73■■□□□ 1.39
LINC00661-203ENST00000549131 CDC42BPBQ9Y5S2 1711 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms