RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	IGF1R	P08069	1367 aa		30.43	■■■□□ 2.46
CHMP1A-205	ENST00000548650	JPH4	Q96JJ6	628 aa		30.38	■■■□□ 2.45
CHMP1A-205	ENST00000548650	KIAA0586	Q9BVV6	1533 aa		30.35	■■■□□ 2.45
CHMP1A-205	ENST00000548650	KIF13A	Q9H1H9	1805 aa		30.25	■■■□□ 2.43
CHMP1A-205	ENST00000548650	CARMIL1	Q5VZK9	1371 aa		30.24	■■■□□ 2.43
CHMP1A-205	ENST00000548650	ADCY10	Q96PN6	1610 aa		30.22	■■■□□ 2.43
CHMP1A-205	ENST00000548650	MAPKBP1	O60336	1514 aa		30.14	■■■□□ 2.42
CHMP1A-205	ENST00000548650	IQGAP2	Q13576	1575 aa		30.14	■■■□□ 2.42
CHMP1A-205	ENST00000548650	DIP2B	Q9P265	1576 aa		30.05	■■■□□ 2.4
CHMP1A-205	ENST00000548650	ABCC10	Q5T3U5	1492 aa		30.04	■■■□□ 2.4
CHMP1A-205	ENST00000548650	RAPGEF2	Q9Y4G8	1499 aa		30.03	■■■□□ 2.4
CHMP1A-205	ENST00000548650	CARMIL2	Q6F5E8	1435 aa		29.99	■■■□□ 2.39
CHMP1A-205	ENST00000548650	PTPRG	P23470	1445 aa		29.97	■■■□□ 2.39
CHMP1A-205	ENST00000548650	DISP1	Q96F81	1524 aa		29.96	■■■□□ 2.39
CHMP1A-205	ENST00000548650	TNIK	Q9UKE5	1360 aa		29.96	■■■□□ 2.39
CHMP1A-205	ENST00000548650	NPM1	P06748	294 aa	Known RBP eCLIP	29.95	■■■□□ 2.39
CHMP1A-205	ENST00000548650	UGGT2	Q9NYU1	1516 aa		29.95	■■■□□ 2.38
CHMP1A-205	ENST00000548650	CTTNBP2	Q8WZ74	1663 aa		29.92	■■■□□ 2.38
CHMP1A-205	ENST00000548650	KIAA0556	O60303	1618 aa		29.89	■■■□□ 2.38
CHMP1A-205	ENST00000548650	ABCC2	Q92887	1545 aa		29.89	■■■□□ 2.38
CHMP1A-205	ENST00000548650	FAM69C	Q0P6D2	419 aa		29.88	■■■□□ 2.37
CHMP1A-205	ENST00000548650	UHRF1BP1L	A0JNW5	1464 aa		29.86	■■■□□ 2.37
CHMP1A-205	ENST00000548650	TTBK1	Q5TCY1	1321 aa	Predicted RBP	29.82	■■■□□ 2.36
CHMP1A-205	ENST00000548650	UACA	Q9BZF9	1416 aa		29.79	■■■□□ 2.36
CHMP1A-205	ENST00000548650	TSPOAP1	O95153	1857 aa		29.79	■■■□□ 2.36
CHMP1A-205	ENST00000548650	PRX	Q9BXM0	1461 aa		29.79	■■■□□ 2.36
CHMP1A-205	ENST00000548650	ASXL2	Q76L83	1435 aa		29.74	■■■□□ 2.35
CHMP1A-205	ENST00000548650	KDM5B	Q9UGL1	1544 aa		29.72	■■■□□ 2.35
CHMP1A-205	ENST00000548650	KDM6B	O15054	1643 aa		29.72	■■■□□ 2.35
CHMP1A-205	ENST00000548650	PLB1	Q6P1J6	1458 aa		29.72	■■■□□ 2.35
CHMP1A-205	ENST00000548650	ZCCHC11	Q5TAX3	1644 aa	Known RBP	29.71	■■■□□ 2.35
CHMP1A-205	ENST00000548650	GLI2	P10070	1586 aa		29.71	■■■□□ 2.35
CHMP1A-205	ENST00000548650	PPRC1	Q5VV67	1664 aa	Known RBP	29.69	■■■□□ 2.34
CHMP1A-205	ENST00000548650	GOLGA3	Q08378	1498 aa		29.66	■■■□□ 2.34
CHMP1A-205	ENST00000548650	AEBP2	Q6ZN18	517 aa	Predicted RBP	29.6	■■■□□ 2.33
CHMP1A-205	ENST00000548650	MAP3K4	Q9Y6R4	1608 aa		29.6	■■■□□ 2.33
CHMP1A-205	ENST00000548650	ABCA8	O94911	1581 aa		29.59	■■■□□ 2.33
CHMP1A-205	ENST00000548650	EPRS	P07814	1512 aa	Known RBP	29.58	■■■□□ 2.33
CHMP1A-205	ENST00000548650	WDR7	Q9Y4E6	1490 aa		29.51	■■■□□ 2.31
CHMP1A-205	ENST00000548650	SAMD9	Q5K651	1589 aa		29.47	■■■□□ 2.31
CHMP1A-205	ENST00000548650	EEA1	Q15075	1411 aa		29.46	■■■□□ 2.31
CHMP1A-205	ENST00000548650	CSRNP3	Q8WYN3	585 aa		29.44	■■■□□ 2.3
CHMP1A-205	ENST00000548650	TEX14	Q8IWB6	1497 aa		29.41	■■■□□ 2.3
CHMP1A-205	ENST00000548650	CFAP43	Q8NDM7	1665 aa		29.38	■■■□□ 2.29
CHMP1A-205	ENST00000548650	COL17A1	Q9UMD9	1497 aa	Predicted RBP	29.36	■■■□□ 2.29
CHMP1A-205	ENST00000548650	KIF21B	O75037	1637 aa		29.31	■■■□□ 2.28
CHMP1A-205	ENST00000548650	RAPGEF6	Q8TEU7	1601 aa		29.3	■■■□□ 2.28
CHMP1A-205	ENST00000548650	MAGI3	Q5TCQ9	1506 aa		29.29	■■■□□ 2.28
CHMP1A-205	ENST00000548650	P3H3	Q8IVL6	736 aa		29.28	■■■□□ 2.28
CHMP1A-205	ENST00000548650	ATP10B	O94823	1461 aa		29.26	■■■□□ 2.27
CHMP1A-205	ENST00000548650	CD109	Q6YHK3	1445 aa		29.24	■■■□□ 2.27
CHMP1A-205	ENST00000548650	KDM4F	A0A1W2PPD8	638 aa		29.23	■■■□□ 2.27
CHMP1A-205	ENST00000548650	FAM9A	Q8IZU1	332 aa	Predicted RBP	29.18	■■■□□ 2.26
CHMP1A-205	ENST00000548650	KCNH8	Q96L42	1107 aa		29.18	■■■□□ 2.26
CHMP1A-205	ENST00000548650	ABCA9	Q8IUA7	1624 aa		29.18	■■■□□ 2.26
CHMP1A-205	ENST00000548650	FHOD3	Q2V2M9	1422 aa		29.18	■■■□□ 2.26
CHMP1A-205	ENST00000548650	EFCAB5	A4FU69	1503 aa		29.17	■■■□□ 2.26
CHMP1A-205	ENST00000548650	ARID3C	A6NKF2	412 aa		29.17	■■■□□ 2.26
CHMP1A-205	ENST00000548650	NUP153	P49790	1475 aa	Known RBP	29.17	■■■□□ 2.26
CHMP1A-205	ENST00000548650	ADGRL1	O94910	1474 aa		29.14	■■■□□ 2.26
CHMP1A-205	ENST00000548650	RANGAP1	P46060	587 aa	Predicted RBP	29.07	■■■□□ 2.24
CHMP1A-205	ENST00000548650	ARAP3	Q8WWN8	1544 aa		29.04	■■■□□ 2.24
CHMP1A-205	ENST00000548650	CHIC1	Q5VXU3	224 aa		29.03	■■■□□ 2.24
CHMP1A-205	ENST00000548650	NEO1	Q92859	1461 aa		28.95	■■■□□ 2.22
CHMP1A-205	ENST00000548650	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	28.94	■■■□□ 2.22
CHMP1A-205	ENST00000548650	HNRNPUL2	Q1KMD3	747 aa	Known RBP	28.94	■■■□□ 2.22
CHMP1A-205	ENST00000548650	FRMPD1	Q5SYB0	1578 aa		28.92	■■■□□ 2.22
CHMP1A-205	ENST00000548650	PHLDB1	Q86UU1	1377 aa		28.92	■■■□□ 2.22
CHMP1A-205	ENST00000548650	CDK13	Q14004	1512 aa	Known RBP	28.9	■■■□□ 2.22
CHMP1A-205	ENST00000548650	ARHGAP35	Q9NRY4	1499 aa		28.9	■■■□□ 2.22
CHMP1A-205	ENST00000548650	TTC37	Q6PGP7	1564 aa		28.89	■■■□□ 2.22
CHMP1A-205	ENST00000548650	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	28.88	■■■□□ 2.21
CHMP1A-205	ENST00000548650	HECW1	Q76N89	1606 aa		28.87	■■■□□ 2.21
CHMP1A-205	ENST00000548650	UBTF	P17480	764 aa	Known RBP	28.85	■■■□□ 2.21
CHMP1A-205	ENST00000548650	EHMT2	Q96KQ7	1210 aa		28.85	■■■□□ 2.21
CHMP1A-205	ENST00000548650	CFAP74	Q9C0B2	1584 aa		28.84	■■■□□ 2.21
CHMP1A-205	ENST00000548650	FMN1	Q68DA7	1419 aa		28.83	■■■□□ 2.21
CHMP1A-205	ENST00000548650	PLEKHD1	A6NEE1	506 aa		28.82	■■■□□ 2.2
CHMP1A-205	ENST00000548650	RICTOR	Q6R327	1708 aa		28.8	■■■□□ 2.2
CHMP1A-205	ENST00000548650	RAPGEF3	O95398	923 aa		28.77	■■■□□ 2.2
CHMP1A-205	ENST00000548650	FANCA	O15360	1455 aa		28.77	■■■□□ 2.2
CHMP1A-205	ENST00000548650	ARHGEF40	Q8TER5	1519 aa		28.75	■■■□□ 2.19
CHMP1A-205	ENST00000548650	LRRIQ1	Q96JM4	1722 aa		28.75	■■■□□ 2.19
CHMP1A-205	ENST00000548650	HECW2	Q9P2P5	1572 aa		28.72	■■■□□ 2.19
CHMP1A-205	ENST00000548650	AKNA	Q7Z591	1439 aa		28.72	■■■□□ 2.19
CHMP1A-205	ENST00000548650	ADAMTSL3	P82987	1691 aa		28.71	■■■□□ 2.19
CHMP1A-205	ENST00000548650	DENND4B	O75064	1496 aa	Predicted RBP	28.71	■■■□□ 2.19
CHMP1A-205	ENST00000548650	ZMYM4	Q5VZL5	1548 aa		28.69	■■■□□ 2.18
CHMP1A-205	ENST00000548650	MYO5C	Q9NQX4	1742 aa		28.69	■■■□□ 2.18
CHMP1A-205	ENST00000548650	KIF14	Q15058	1648 aa		28.69	■■■□□ 2.18
CHMP1A-205	ENST00000548650	BCORL1	Q5H9F3	1711 aa		28.67	■■■□□ 2.18
CHMP1A-205	ENST00000548650	PCF11	O94913	1555 aa	Known RBP	28.66	■■■□□ 2.18
CHMP1A-205	ENST00000548650	PLCH2	O75038	1416 aa		28.63	■■■□□ 2.17
CHMP1A-205	ENST00000548650	MADD	Q8WXG6	1647 aa		28.6	■■■□□ 2.17
CHMP1A-205	ENST00000548650	TRO	Q12816	1431 aa	Predicted RBP	28.6	■■■□□ 2.17
CHMP1A-205	ENST00000548650	ATP1B4	Q9UN42	357 aa	Predicted RBP	28.59	■■■□□ 2.17
CHMP1A-205	ENST00000548650	ZFYVE16	Q7Z3T8	1539 aa		28.59	■■■□□ 2.17
CHMP1A-205	ENST00000548650	POGZ	Q7Z3K3	1410 aa		28.58	■■■□□ 2.17
CHMP1A-205	ENST00000548650	SIGLEC1	Q9BZZ2	1709 aa		28.57	■■■□□ 2.16
CHMP1A-205	ENST00000548650	PTPRM	P28827	1452 aa		28.56	■■■□□ 2.16

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms