RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 IGF1RP08069 1367 aa30.43■■■□□ 2.46
CHMP1A-205ENST00000548650 JPH4Q96JJ6 628 aa30.38■■■□□ 2.45
CHMP1A-205ENST00000548650 KIAA0586Q9BVV6 1533 aa30.35■■■□□ 2.45
CHMP1A-205ENST00000548650 KIF13AQ9H1H9 1805 aa30.25■■■□□ 2.43
CHMP1A-205ENST00000548650 CARMIL1Q5VZK9 1371 aa30.24■■■□□ 2.43
CHMP1A-205ENST00000548650 ADCY10Q96PN6 1610 aa30.22■■■□□ 2.43
CHMP1A-205ENST00000548650 MAPKBP1O60336 1514 aa30.14■■■□□ 2.42
CHMP1A-205ENST00000548650 IQGAP2Q13576 1575 aa30.14■■■□□ 2.42
CHMP1A-205ENST00000548650 DIP2BQ9P265 1576 aa30.05■■■□□ 2.4
CHMP1A-205ENST00000548650 ABCC10Q5T3U5 1492 aa30.04■■■□□ 2.4
CHMP1A-205ENST00000548650 RAPGEF2Q9Y4G8 1499 aa30.03■■■□□ 2.4
CHMP1A-205ENST00000548650 CARMIL2Q6F5E8 1435 aa29.99■■■□□ 2.39
CHMP1A-205ENST00000548650 PTPRGP23470 1445 aa29.97■■■□□ 2.39
CHMP1A-205ENST00000548650 DISP1Q96F81 1524 aa29.96■■■□□ 2.39
CHMP1A-205ENST00000548650 TNIKQ9UKE5 1360 aa29.96■■■□□ 2.39
CHMP1A-205ENST00000548650 NPM1P06748 294 aaKnown RBP eCLIP29.95■■■□□ 2.39
CHMP1A-205ENST00000548650 UGGT2Q9NYU1 1516 aa29.95■■■□□ 2.38
CHMP1A-205ENST00000548650 CTTNBP2Q8WZ74 1663 aa29.92■■■□□ 2.38
CHMP1A-205ENST00000548650 KIAA0556O60303 1618 aa29.89■■■□□ 2.38
CHMP1A-205ENST00000548650 ABCC2Q92887 1545 aa29.89■■■□□ 2.38
CHMP1A-205ENST00000548650 FAM69CQ0P6D2 419 aa29.88■■■□□ 2.37
CHMP1A-205ENST00000548650 UHRF1BP1LA0JNW5 1464 aa29.86■■■□□ 2.37
CHMP1A-205ENST00000548650 TTBK1Q5TCY1 1321 aaPredicted RBP29.82■■■□□ 2.36
CHMP1A-205ENST00000548650 UACAQ9BZF9 1416 aa29.79■■■□□ 2.36
CHMP1A-205ENST00000548650 TSPOAP1O95153 1857 aa29.79■■■□□ 2.36
CHMP1A-205ENST00000548650 PRXQ9BXM0 1461 aa29.79■■■□□ 2.36
CHMP1A-205ENST00000548650 ASXL2Q76L83 1435 aa29.74■■■□□ 2.35
CHMP1A-205ENST00000548650 KDM5BQ9UGL1 1544 aa29.72■■■□□ 2.35
CHMP1A-205ENST00000548650 KDM6BO15054 1643 aa29.72■■■□□ 2.35
CHMP1A-205ENST00000548650 PLB1Q6P1J6 1458 aa29.72■■■□□ 2.35
CHMP1A-205ENST00000548650 ZCCHC11Q5TAX3 1644 aaKnown RBP29.71■■■□□ 2.35
CHMP1A-205ENST00000548650 GLI2P10070 1586 aa29.71■■■□□ 2.35
CHMP1A-205ENST00000548650 PPRC1Q5VV67 1664 aaKnown RBP29.69■■■□□ 2.34
CHMP1A-205ENST00000548650 GOLGA3Q08378 1498 aa29.66■■■□□ 2.34
CHMP1A-205ENST00000548650 AEBP2Q6ZN18 517 aaPredicted RBP29.6■■■□□ 2.33
CHMP1A-205ENST00000548650 MAP3K4Q9Y6R4 1608 aa29.6■■■□□ 2.33
CHMP1A-205ENST00000548650 ABCA8O94911 1581 aa29.59■■■□□ 2.33
CHMP1A-205ENST00000548650 EPRSP07814 1512 aaKnown RBP29.58■■■□□ 2.33
CHMP1A-205ENST00000548650 WDR7Q9Y4E6 1490 aa29.51■■■□□ 2.31
CHMP1A-205ENST00000548650 SAMD9Q5K651 1589 aa29.47■■■□□ 2.31
CHMP1A-205ENST00000548650 EEA1Q15075 1411 aa29.46■■■□□ 2.31
CHMP1A-205ENST00000548650 CSRNP3Q8WYN3 585 aa29.44■■■□□ 2.3
CHMP1A-205ENST00000548650 TEX14Q8IWB6 1497 aa29.41■■■□□ 2.3
CHMP1A-205ENST00000548650 CFAP43Q8NDM7 1665 aa29.38■■■□□ 2.29
CHMP1A-205ENST00000548650 COL17A1Q9UMD9 1497 aaPredicted RBP29.36■■■□□ 2.29
CHMP1A-205ENST00000548650 KIF21BO75037 1637 aa29.31■■■□□ 2.28
CHMP1A-205ENST00000548650 RAPGEF6Q8TEU7 1601 aa29.3■■■□□ 2.28
CHMP1A-205ENST00000548650 MAGI3Q5TCQ9 1506 aa29.29■■■□□ 2.28
CHMP1A-205ENST00000548650 P3H3Q8IVL6 736 aa29.28■■■□□ 2.28
CHMP1A-205ENST00000548650 ATP10BO94823 1461 aa29.26■■■□□ 2.27
CHMP1A-205ENST00000548650 CD109Q6YHK3 1445 aa29.24■■■□□ 2.27
CHMP1A-205ENST00000548650 KDM4FA0A1W2PPD8 638 aa29.23■■■□□ 2.27
CHMP1A-205ENST00000548650 FAM9AQ8IZU1 332 aaPredicted RBP29.18■■■□□ 2.26
CHMP1A-205ENST00000548650 KCNH8Q96L42 1107 aa29.18■■■□□ 2.26
CHMP1A-205ENST00000548650 ABCA9Q8IUA7 1624 aa29.18■■■□□ 2.26
CHMP1A-205ENST00000548650 FHOD3Q2V2M9 1422 aa29.18■■■□□ 2.26
CHMP1A-205ENST00000548650 EFCAB5A4FU69 1503 aa29.17■■■□□ 2.26
CHMP1A-205ENST00000548650 ARID3CA6NKF2 412 aa29.17■■■□□ 2.26
CHMP1A-205ENST00000548650 NUP153P49790 1475 aaKnown RBP29.17■■■□□ 2.26
CHMP1A-205ENST00000548650 ADGRL1O94910 1474 aa29.14■■■□□ 2.26
CHMP1A-205ENST00000548650 RANGAP1P46060 587 aaPredicted RBP29.07■■■□□ 2.24
CHMP1A-205ENST00000548650 ARAP3Q8WWN8 1544 aa29.04■■■□□ 2.24
CHMP1A-205ENST00000548650 CHIC1Q5VXU3 224 aa29.03■■■□□ 2.24
CHMP1A-205ENST00000548650 NEO1Q92859 1461 aa28.95■■■□□ 2.22
CHMP1A-205ENST00000548650 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.94■■■□□ 2.22
CHMP1A-205ENST00000548650 HNRNPUL2Q1KMD3 747 aaKnown RBP28.94■■■□□ 2.22
CHMP1A-205ENST00000548650 FRMPD1Q5SYB0 1578 aa28.92■■■□□ 2.22
CHMP1A-205ENST00000548650 PHLDB1Q86UU1 1377 aa28.92■■■□□ 2.22
CHMP1A-205ENST00000548650 CDK13Q14004 1512 aaKnown RBP28.9■■■□□ 2.22
CHMP1A-205ENST00000548650 ARHGAP35Q9NRY4 1499 aa28.9■■■□□ 2.22
CHMP1A-205ENST00000548650 TTC37Q6PGP7 1564 aa28.89■■■□□ 2.22
CHMP1A-205ENST00000548650 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.88■■■□□ 2.21
CHMP1A-205ENST00000548650 HECW1Q76N89 1606 aa28.87■■■□□ 2.21
CHMP1A-205ENST00000548650 UBTFP17480 764 aaKnown RBP28.85■■■□□ 2.21
CHMP1A-205ENST00000548650 EHMT2Q96KQ7 1210 aa28.85■■■□□ 2.21
CHMP1A-205ENST00000548650 CFAP74Q9C0B2 1584 aa28.84■■■□□ 2.21
CHMP1A-205ENST00000548650 FMN1Q68DA7 1419 aa28.83■■■□□ 2.21
CHMP1A-205ENST00000548650 PLEKHD1A6NEE1 506 aa28.82■■■□□ 2.2
CHMP1A-205ENST00000548650 RICTORQ6R327 1708 aa28.8■■■□□ 2.2
CHMP1A-205ENST00000548650 RAPGEF3O95398 923 aa28.77■■■□□ 2.2
CHMP1A-205ENST00000548650 FANCAO15360 1455 aa28.77■■■□□ 2.2
CHMP1A-205ENST00000548650 ARHGEF40Q8TER5 1519 aa28.75■■■□□ 2.19
CHMP1A-205ENST00000548650 LRRIQ1Q96JM4 1722 aa28.75■■■□□ 2.19
CHMP1A-205ENST00000548650 HECW2Q9P2P5 1572 aa28.72■■■□□ 2.19
CHMP1A-205ENST00000548650 AKNAQ7Z591 1439 aa28.72■■■□□ 2.19
CHMP1A-205ENST00000548650 ADAMTSL3P82987 1691 aa28.71■■■□□ 2.19
CHMP1A-205ENST00000548650 DENND4BO75064 1496 aaPredicted RBP28.71■■■□□ 2.19
CHMP1A-205ENST00000548650 ZMYM4Q5VZL5 1548 aa28.69■■■□□ 2.18
CHMP1A-205ENST00000548650 MYO5CQ9NQX4 1742 aa28.69■■■□□ 2.18
CHMP1A-205ENST00000548650 KIF14Q15058 1648 aa28.69■■■□□ 2.18
CHMP1A-205ENST00000548650 BCORL1Q5H9F3 1711 aa28.67■■■□□ 2.18
CHMP1A-205ENST00000548650 PCF11O94913 1555 aaKnown RBP28.66■■■□□ 2.18
CHMP1A-205ENST00000548650 PLCH2O75038 1416 aa28.63■■■□□ 2.17
CHMP1A-205ENST00000548650 MADDQ8WXG6 1647 aa28.6■■■□□ 2.17
CHMP1A-205ENST00000548650 TROQ12816 1431 aaPredicted RBP28.6■■■□□ 2.17
CHMP1A-205ENST00000548650 ATP1B4Q9UN42 357 aaPredicted RBP28.59■■■□□ 2.17
CHMP1A-205ENST00000548650 ZFYVE16Q7Z3T8 1539 aa28.59■■■□□ 2.17
CHMP1A-205ENST00000548650 POGZQ7Z3K3 1410 aa28.58■■■□□ 2.17
CHMP1A-205ENST00000548650 SIGLEC1Q9BZZ2 1709 aa28.57■■■□□ 2.16
CHMP1A-205ENST00000548650 PTPRMP28827 1452 aa28.56■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms