RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 FAM50AQ14320 339 aaKnown RBP16.57■□□□□ 0.24
CUX1-212ENST00000547394 ZNF608Q9ULD9 1512 aaPredicted RBP16.57■□□□□ 0.24
CUX1-212ENST00000547394 ABCA5Q8WWZ7 1642 aa16.57■□□□□ 0.24
CUX1-212ENST00000547394 PCF11O94913 1555 aaKnown RBP16.56■□□□□ 0.24
CUX1-212ENST00000547394 MRC2Q9UBG0 1479 aa16.55■□□□□ 0.24
CUX1-212ENST00000547394 TARBP1Q13395 1621 aaKnown RBP16.55■□□□□ 0.24
CUX1-212ENST00000547394 CCNB3Q8WWL7 1395 aa16.55■□□□□ 0.24
CUX1-212ENST00000547394 CUL7Q14999 1698 aa16.54■□□□□ 0.24
CUX1-212ENST00000547394 PHLDB1Q86UU1 1377 aa16.54■□□□□ 0.24
CUX1-212ENST00000547394 ERCC6Q03468 1493 aa16.53■□□□□ 0.24
CUX1-212ENST00000547394 TIAM1Q13009 1591 aa16.53■□□□□ 0.24
CUX1-212ENST00000547394 LRRC9Q6ZRR7 1453 aa16.51■□□□□ 0.23
CUX1-212ENST00000547394 FHAD1B1AJZ9 1412 aa16.51■□□□□ 0.23
CUX1-212ENST00000547394 RRBP1Q9P2E9 1410 aaKnown RBP16.5■□□□□ 0.23
CUX1-212ENST00000547394 FBLN2P98095 1184 aa16.5■□□□□ 0.23
CUX1-212ENST00000547394 CTTNBP2Q8WZ74 1663 aa16.48■□□□□ 0.23
CUX1-212ENST00000547394 DHX57Q6P158 1386 aaKnown RBP16.44■□□□□ 0.22
CUX1-212ENST00000547394 DIEXFQ68CQ4 756 aaKnown RBP16.44■□□□□ 0.22
CUX1-212ENST00000547394 CASKIN1Q8WXD9 1431 aa16.42■□□□□ 0.22
CUX1-212ENST00000547394 EFCAB5A4FU69 1503 aa16.41■□□□□ 0.22
CUX1-212ENST00000547394 PBRM1Q86U86 1689 aa16.41■□□□□ 0.22
CUX1-212ENST00000547394 MTUS2Q5JR59 1369 aa16.4■□□□□ 0.22
CUX1-212ENST00000547394 GRIN2BQ13224 1484 aa16.4■□□□□ 0.22
CUX1-212ENST00000547394 FYCO1Q9BQS8 1478 aa16.4■□□□□ 0.22
CUX1-212ENST00000547394 FMN1Q68DA7 1419 aa16.4■□□□□ 0.22
CUX1-212ENST00000547394 SNAPC4Q5SXM2 1469 aa16.39■□□□□ 0.21
CUX1-212ENST00000547394 RAB3GAP2Q9H2M9 1393 aa16.38■□□□□ 0.21
CUX1-212ENST00000547394 IFT140Q96RY7 1462 aa16.38■□□□□ 0.21
CUX1-212ENST00000547394 WDR62O43379 1518 aa16.37■□□□□ 0.21
CUX1-212ENST00000547394 ZNF316A6NFI3 1004 aaPredicted RBP16.37■□□□□ 0.21
CUX1-212ENST00000547394 ADAMTS12P58397 1594 aa16.36■□□□□ 0.21
CUX1-212ENST00000547394 MAP3K1Q13233 1512 aa16.35■□□□□ 0.21
CUX1-212ENST00000547394 CHMP7Q8WUX9 453 aaPredicted RBP16.35■□□□□ 0.21
CUX1-212ENST00000547394 CFAP43Q8NDM7 1665 aa16.35■□□□□ 0.21
CUX1-212ENST00000547394 SAMD9Q5K651 1589 aa16.34■□□□□ 0.21
CUX1-212ENST00000547394 EIF4G3O43432 1585 aaKnown RBP16.31■□□□□ 0.2
CUX1-212ENST00000547394 LRRIQ1Q96JM4 1722 aa16.31■□□□□ 0.2
CUX1-212ENST00000547394 IQGAP2Q13576 1575 aa16.31■□□□□ 0.2
CUX1-212ENST00000547394 NEUROD1Q13562 356 aa16.3■□□□□ 0.2
CUX1-212ENST00000547394 SIN3AQ96ST3 1273 aa16.29■□□□□ 0.2
CUX1-212ENST00000547394 CDK13Q14004 1512 aaKnown RBP16.28■□□□□ 0.2
CUX1-212ENST00000547394 CHIC2Q9UKJ5 165 aa16.28■□□□□ 0.2
CUX1-212ENST00000547394 THOC2Q8NI27 1593 aaKnown RBP16.27■□□□□ 0.2
CUX1-212ENST00000547394 MAGI3Q5TCQ9 1506 aa16.27■□□□□ 0.2
CUX1-212ENST00000547394 SETD5Q9C0A6 1442 aa16.27■□□□□ 0.19
CUX1-212ENST00000547394 FGD6Q6ZV73 1430 aa16.26■□□□□ 0.19
CUX1-212ENST00000547394 NCOA2Q15596 1464 aa16.26■□□□□ 0.19
CUX1-212ENST00000547394 GRIN2AQ12879 1464 aa16.25■□□□□ 0.19
CUX1-212ENST00000547394 PTPRKQ15262 1439 aa16.24■□□□□ 0.19
CUX1-212ENST00000547394 RRP7BPQ9NSQ0 103 aa16.22■□□□□ 0.19
CUX1-212ENST00000547394 YTHDC1Q96MU7 727 aaKnown RBP16.21■□□□□ 0.19
CUX1-212ENST00000547394 DISP1Q96F81 1524 aa16.2■□□□□ 0.18
CUX1-212ENST00000547394 EPRSP07814 1512 aaKnown RBP16.2■□□□□ 0.18
CUX1-212ENST00000547394 KIAA0586Q9BVV6 1533 aa16.2■□□□□ 0.18
CUX1-212ENST00000547394 MIER1Q8N108 512 aa16.19■□□□□ 0.18
CUX1-212ENST00000547394 MAPKBP1O60336 1514 aa16.18■□□□□ 0.18
CUX1-212ENST00000547394 MYOM3Q5VTT5 1437 aa16.18■□□□□ 0.18
CUX1-212ENST00000547394 JPH4Q96JJ6 628 aa16.17■□□□□ 0.18
CUX1-212ENST00000547394 ZNF644Q9H582 1327 aaPredicted RBP16.17■□□□□ 0.18
CUX1-212ENST00000547394 CLSPNQ9HAW4 1339 aa16.17■□□□□ 0.18
CUX1-212ENST00000547394 CEP170Q5SW79 1584 aa16.16■□□□□ 0.18
CUX1-212ENST00000547394 UGGT2Q9NYU1 1516 aa16.15■□□□□ 0.18
CUX1-212ENST00000547394 SYNJ2O15056 1496 aa16.15■□□□□ 0.18
CUX1-212ENST00000547394 PLB1Q6P1J6 1458 aa16.14■□□□□ 0.17
CUX1-212ENST00000547394 KIAA0556O60303 1618 aa16.13■□□□□ 0.17
CUX1-212ENST00000547394 HIRIP3Q9BW71 556 aaPredicted RBP16.13■□□□□ 0.17
CUX1-212ENST00000547394 HECW1Q76N89 1606 aa16.13■□□□□ 0.17
CUX1-212ENST00000547394 EHBP1L1Q8N3D4 1523 aa16.13■□□□□ 0.17
CUX1-212ENST00000547394 MAGI1Q96QZ7 1491 aaPredicted RBP16.13■□□□□ 0.17
CUX1-212ENST00000547394 SUPT6HQ7KZ85 1726 aaKnown RBP16.12■□□□□ 0.17
CUX1-212ENST00000547394 NUP153P49790 1475 aaKnown RBP16.11■□□□□ 0.17
CUX1-212ENST00000547394 CCDC18Q5T9S5 1454 aa16.11■□□□□ 0.17
CUX1-212ENST00000547394 ZNF777Q9ULD5 760 aaPredicted RBP16.11■□□□□ 0.17
CUX1-212ENST00000547394 PRG4Q92954 1404 aaPredicted RBP16.09■□□□□ 0.17
CUX1-212ENST00000547394 TRIM52Q96A61 297 aa16.09■□□□□ 0.17
CUX1-212ENST00000547394 PTPN23Q9H3S7 1636 aa16.08■□□□□ 0.16
CUX1-212ENST00000547394 SCAF1Q9H7N4 1312 aaKnown RBP16.07■□□□□ 0.16
CUX1-212ENST00000547394 FOXD1Q16676 465 aa16.07■□□□□ 0.16
CUX1-212ENST00000547394 NAIPQ13075 1403 aa16.06■□□□□ 0.16
CUX1-212ENST00000547394 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.05■□□□□ 0.162e-6■■□□□ 13.4
CUX1-212ENST00000547394 ARHGEF11O15085 1522 aa16.04■□□□□ 0.16
CUX1-212ENST00000547394 HFM1A2PYH4 1435 aa16.03■□□□□ 0.16
CUX1-212ENST00000547394 NUP160Q12769 1436 aa16.03■□□□□ 0.16
CUX1-212ENST00000547394 RAPGEF6Q8TEU7 1601 aa16.02■□□□□ 0.16
CUX1-212ENST00000547394 CDK11AQ9UQ88 783 aaPredicted RBP16.01■□□□□ 0.15
CUX1-212ENST00000547394 CARMIL2Q6F5E8 1435 aa16■□□□□ 0.15
CUX1-212ENST00000547394 CFDP1Q9UEE9 299 aaPredicted RBP16■□□□□ 0.15
CUX1-212ENST00000547394 KDM6BO15054 1643 aa15.99■□□□□ 0.15
CUX1-212ENST00000547394 ACIN1Q9UKV3 1341 aaKnown RBP15.98■□□□□ 0.15
CUX1-212ENST00000547394 UACAQ9BZF9 1416 aa15.96■□□□□ 0.14
CUX1-212ENST00000547394 KIF14Q15058 1648 aa15.94■□□□□ 0.14
CUX1-212ENST00000547394 TCOF1Q13428 1488 aaKnown RBP15.94■□□□□ 0.14
CUX1-212ENST00000547394 TONSLQ96HA7 1378 aa15.94■□□□□ 0.14
CUX1-212ENST00000547394 PLEKHD1A6NEE1 506 aa15.94■□□□□ 0.14
CUX1-212ENST00000547394 PPP1R15AO75807 674 aaPredicted RBP15.93■□□□□ 0.14
CUX1-212ENST00000547394 TROQ12816 1431 aaPredicted RBP15.93■□□□□ 0.14
CUX1-212ENST00000547394 DDX10Q13206 875 aaKnown RBP15.93■□□□□ 0.14
CUX1-212ENST00000547394 ABCC5O15440 1437 aa15.92■□□□□ 0.14
CUX1-212ENST00000547394 PTPRGP23470 1445 aa15.92■□□□□ 0.14
CUX1-212ENST00000547394 MIA2Q96PC5 1412 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms