RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 ARAP1Q96P48 1450 aa20.24■□□□□ 0.83
YBX3-217ENST00000546164 CARMIL1Q5VZK9 1371 aa20.21■□□□□ 0.83
YBX3-217ENST00000546164 CYB5RLQ6IPT4 315 aa20.2■□□□□ 0.82
YBX3-217ENST00000546164 SHROOM2Q13796 1616 aa20.18■□□□□ 0.82
YBX3-217ENST00000546164 RUSC2Q8N2Y8 1516 aa20.16■□□□□ 0.82
YBX3-217ENST00000546164 KIAA0586Q9BVV6 1533 aa20.12■□□□□ 0.81
YBX3-217ENST00000546164 JPH4Q96JJ6 628 aa20.11■□□□□ 0.81
YBX3-217ENST00000546164 ERCC6L2Q5T890 1561 aa20.1■□□□□ 0.81
YBX3-217ENST00000546164 RAPGEF2Q9Y4G8 1499 aa20.08■□□□□ 0.81
YBX3-217ENST00000546164 PRG4Q92954 1404 aaPredicted RBP20.07■□□□□ 0.8
YBX3-217ENST00000546164 PRXQ9BXM0 1461 aa20.02■□□□□ 0.8
YBX3-217ENST00000546164 EEA1Q15075 1411 aa19.99■□□□□ 0.79
YBX3-217ENST00000546164 IQGAP2Q13576 1575 aa19.96■□□□□ 0.79
YBX3-217ENST00000546164 CSRNP3Q8WYN3 585 aa19.95■□□□□ 0.78
YBX3-217ENST00000546164 CARMIL2Q6F5E8 1435 aa19.9■□□□□ 0.78
YBX3-217ENST00000546164 UGGT2Q9NYU1 1516 aa19.89■□□□□ 0.77
YBX3-217ENST00000546164 DISP1Q96F81 1524 aa19.86■□□□□ 0.77
YBX3-217ENST00000546164 TNIKQ9UKE5 1360 aa19.84■□□□□ 0.77
YBX3-217ENST00000546164 PTPRGP23470 1445 aa19.84■□□□□ 0.77
YBX3-217ENST00000546164 CTTNBP2Q8WZ74 1663 aa19.83■□□□□ 0.76
YBX3-217ENST00000546164 TRHP20396 242 aaPredicted RBP19.79■□□□□ 0.76
YBX3-217ENST00000546164 KIAA0556O60303 1618 aa19.78■□□□□ 0.76
YBX3-217ENST00000546164 FAM9AQ8IZU1 332 aaPredicted RBP19.78■□□□□ 0.76
YBX3-217ENST00000546164 ADCY10Q96PN6 1610 aa19.76■□□□□ 0.75
YBX3-217ENST00000546164 GOLGA3Q08378 1498 aa19.76■□□□□ 0.75
YBX3-217ENST00000546164 KIF21BO75037 1637 aa19.75■□□□□ 0.75
YBX3-217ENST00000546164 NPM1P06748 294 aaKnown RBP eCLIP19.72■□□□□ 0.75
YBX3-217ENST00000546164 UHRF1BP1LA0JNW5 1464 aa19.72■□□□□ 0.75
YBX3-217ENST00000546164 MAPKBP1O60336 1514 aa19.71■□□□□ 0.75
YBX3-217ENST00000546164 UACAQ9BZF9 1416 aa19.7■□□□□ 0.74
YBX3-217ENST00000546164 TTBK1Q5TCY1 1321 aaPredicted RBP19.69■□□□□ 0.74
YBX3-217ENST00000546164 ABCC2Q92887 1545 aa19.68■□□□□ 0.74
YBX3-217ENST00000546164 MSH5O43196 834 aa19.67■□□□□ 0.74
YBX3-217ENST00000546164 SAMD9Q5K651 1589 aa19.63■□□□□ 0.73
YBX3-217ENST00000546164 ABCC10Q5T3U5 1492 aa19.62■□□□□ 0.73
YBX3-217ENST00000546164 KDM5BQ9UGL1 1544 aa19.61■□□□□ 0.73
YBX3-217ENST00000546164 PLB1Q6P1J6 1458 aa19.6■□□□□ 0.73
YBX3-217ENST00000546164 ABCA8O94911 1581 aa19.58■□□□□ 0.73
YBX3-217ENST00000546164 DIP2BQ9P265 1576 aa19.56■□□□□ 0.72
YBX3-217ENST00000546164 KIF13AQ9H1H9 1805 aa19.55■□□□□ 0.72
YBX3-217ENST00000546164 ASXL2Q76L83 1435 aa19.55■□□□□ 0.72
YBX3-217ENST00000546164 P3H3Q8IVL6 736 aa19.55■□□□□ 0.72
YBX3-217ENST00000546164 UBTFP17480 764 aaKnown RBP19.54■□□□□ 0.72
YBX3-217ENST00000546164 FAM69CQ0P6D2 419 aa19.54■□□□□ 0.72
YBX3-217ENST00000546164 EFCAB5A4FU69 1503 aa19.54■□□□□ 0.72
YBX3-217ENST00000546164 ZCCHC11Q5TAX3 1644 aaKnown RBP19.51■□□□□ 0.71
YBX3-217ENST00000546164 FHOD3Q2V2M9 1422 aa19.5■□□□□ 0.71
YBX3-217ENST00000546164 RANGAP1P46060 587 aaPredicted RBP19.47■□□□□ 0.71
YBX3-217ENST00000546164 EHMT2Q96KQ7 1210 aa19.47■□□□□ 0.71
YBX3-217ENST00000546164 GLI2P10070 1586 aa19.46■□□□□ 0.71
YBX3-217ENST00000546164 WDR7Q9Y4E6 1490 aa19.44■□□□□ 0.7
YBX3-217ENST00000546164 EPRSP07814 1512 aaKnown RBP19.44■□□□□ 0.7
YBX3-217ENST00000546164 RAPGEF6Q8TEU7 1601 aa19.43■□□□□ 0.7
YBX3-217ENST00000546164 ATP10BO94823 1461 aa19.42■□□□□ 0.7
YBX3-217ENST00000546164 ARHGAP35Q9NRY4 1499 aa19.42■□□□□ 0.7
YBX3-217ENST00000546164 NUP153P49790 1475 aaKnown RBP19.4■□□□□ 0.7
YBX3-217ENST00000546164 FMN1Q68DA7 1419 aa19.36■□□□□ 0.69
YBX3-217ENST00000546164 MAP3K4Q9Y6R4 1608 aa19.34■□□□□ 0.69
YBX3-217ENST00000546164 ARID3CA6NKF2 412 aa19.34■□□□□ 0.69
YBX3-217ENST00000546164 PPRC1Q5VV67 1664 aaKnown RBP19.3■□□□□ 0.68
YBX3-217ENST00000546164 TSPOAP1O95153 1857 aa19.29■□□□□ 0.68
YBX3-217ENST00000546164 KCNH8Q96L42 1107 aa19.29■□□□□ 0.68
YBX3-217ENST00000546164 TEX14Q8IWB6 1497 aa19.28■□□□□ 0.68
YBX3-217ENST00000546164 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.27■□□□□ 0.68
YBX3-217ENST00000546164 HNRNPUL2Q1KMD3 747 aaKnown RBP19.27■□□□□ 0.68
YBX3-217ENST00000546164 CLIP1P30622 1438 aa19.26■□□□□ 0.67
YBX3-217ENST00000546164 CD109Q6YHK3 1445 aa19.26■□□□□ 0.67
YBX3-217ENST00000546164 MAGI3Q5TCQ9 1506 aa19.26■□□□□ 0.67
YBX3-217ENST00000546164 CFAP43Q8NDM7 1665 aa19.26■□□□□ 0.67
YBX3-217ENST00000546164 KDM6BO15054 1643 aa19.24■□□□□ 0.67
YBX3-217ENST00000546164 HECW1Q76N89 1606 aa19.24■□□□□ 0.67
YBX3-217ENST00000546164 PLEKHD1A6NEE1 506 aa19.23■□□□□ 0.67
YBX3-217ENST00000546164 ABCA9Q8IUA7 1624 aa19.22■□□□□ 0.67
YBX3-217ENST00000546164 CDK13Q14004 1512 aaKnown RBP19.21■□□□□ 0.67
YBX3-217ENST00000546164 CASKIN1Q8WXD9 1431 aa19.21■□□□□ 0.67
YBX3-217ENST00000546164 COL17A1Q9UMD9 1497 aaPredicted RBP19.17■□□□□ 0.66
YBX3-217ENST00000546164 ATP1B4Q9UN42 357 aaPredicted RBP19.16■□□□□ 0.66
YBX3-217ENST00000546164 CEP162Q5TB80 1403 aa19.16■□□□□ 0.66
YBX3-217ENST00000546164 CDK11AQ9UQ88 783 aaPredicted RBP19.15■□□□□ 0.66
YBX3-217ENST00000546164 FYCO1Q9BQS8 1478 aa19.15■□□□□ 0.66
YBX3-217ENST00000546164 PCF11O94913 1555 aaKnown RBP19.15■□□□□ 0.66
YBX3-217ENST00000546164 PHLDB1Q86UU1 1377 aa19.14■□□□□ 0.65
YBX3-217ENST00000546164 CCDC18Q5T9S5 1454 aa19.14■□□□□ 0.65
YBX3-217ENST00000546164 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.11■□□□□ 0.65
YBX3-217ENST00000546164 LOC105371045A0A1W2PR82 267 aa19.11■□□□□ 0.65
YBX3-217ENST00000546164 NEO1Q92859 1461 aa19.1■□□□□ 0.65
YBX3-217ENST00000546164 TROQ12816 1431 aaPredicted RBP19.1■□□□□ 0.65
YBX3-217ENST00000546164 ARAP3Q8WWN8 1544 aa19.1■□□□□ 0.65
YBX3-217ENST00000546164 LRRIQ1Q96JM4 1722 aa19.09■□□□□ 0.65
YBX3-217ENST00000546164 TTC37Q6PGP7 1564 aa19.07■□□□□ 0.64
YBX3-217ENST00000546164 PLCH2O75038 1416 aa19.03■□□□□ 0.64
YBX3-217ENST00000546164 PIAS4Q8N2W9 510 aaPredicted RBP19.03■□□□□ 0.64
YBX3-217ENST00000546164 KIF14Q15058 1648 aa19.03■□□□□ 0.64
YBX3-217ENST00000546164 FANCAO15360 1455 aa19.02■□□□□ 0.63
YBX3-217ENST00000546164 AKNAQ7Z591 1439 aa19■□□□□ 0.63
YBX3-217ENST00000546164 CFAP74Q9C0B2 1584 aa18.99■□□□□ 0.63
YBX3-217ENST00000546164 VPS8Q8N3P4 1428 aa18.95■□□□□ 0.62
YBX3-217ENST00000546164 EFCAB2Q5VUJ9 269 aa18.95■□□□□ 0.62
YBX3-217ENST00000546164 DENND4BO75064 1496 aaPredicted RBP18.95■□□□□ 0.62
YBX3-217ENST00000546164 MYO5CQ9NQX4 1742 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms