RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 TRIM52Q96A61 297 aa12.3□□□□□ -0.44
CLIP1-218ENST00000545889 RAPGEF2Q9Y4G8 1499 aa12.29□□□□□ -0.44
CLIP1-218ENST00000545889 CUX1P39880 1505 aa12.28□□□□□ -0.44
CLIP1-218ENST00000545889 AQRO60306 1485 aaKnown RBP eCLIP12.27□□□□□ -0.457e-7■■■■■ 48.1
CLIP1-218ENST00000545889 ZNF777Q9ULD5 760 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-218ENST00000545889 TOPBP1Q92547 1522 aa12.25□□□□□ -0.45
CLIP1-218ENST00000545889 IGF1RP08069 1367 aa12.25□□□□□ -0.45
CLIP1-218ENST00000545889 CDK11AQ9UQ88 783 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-218ENST00000545889 POLA1P09884 1462 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-218ENST00000545889 GAPVD1Q14C86 1478 aa12.22□□□□□ -0.45
CLIP1-218ENST00000545889 LAMC3Q9Y6N6 1575 aa12.22□□□□□ -0.45
CLIP1-218ENST00000545889 MRC2Q9UBG0 1479 aa12.22□□□□□ -0.45
CLIP1-218ENST00000545889 SLC24A1O60721 1099 aa12.2□□□□□ -0.46
CLIP1-218ENST00000545889 DIEXFQ68CQ4 756 aaKnown RBP12.2□□□□□ -0.46
CLIP1-218ENST00000545889 TOP2BQ02880 1626 aa12.19□□□□□ -0.46
CLIP1-218ENST00000545889 MTUS2Q5JR59 1369 aa12.19□□□□□ -0.46
CLIP1-218ENST00000545889 STAG3Q9UJ98 1225 aa12.18□□□□□ -0.46
CLIP1-218ENST00000545889 KCNH8Q96L42 1107 aa12.18□□□□□ -0.46
CLIP1-218ENST00000545889 ZNF326Q5BKZ1 582 aaKnown RBP12.17□□□□□ -0.46
CLIP1-218ENST00000545889 URB2Q14146 1524 aaKnown RBP12.15□□□□□ -0.46
CLIP1-218ENST00000545889 DNMBPQ6XZF7 1577 aa12.14□□□□□ -0.47
CLIP1-218ENST00000545889 ANP32EQ9BTT0 268 aa12.14□□□□□ -0.47
CLIP1-218ENST00000545889 JPH4Q96JJ6 628 aa12.13□□□□□ -0.47
CLIP1-218ENST00000545889 CHIC2Q9UKJ5 165 aa12.13□□□□□ -0.47
CLIP1-218ENST00000545889 FHOD3Q2V2M9 1422 aa12.13□□□□□ -0.47
CLIP1-218ENST00000545889 KANK4Q5T7N3 995 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-218ENST00000545889 PLEKHD1A6NEE1 506 aa12.1□□□□□ -0.47
CLIP1-218ENST00000545889 DAXXQ9UER7 740 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-218ENST00000545889 CHGAP10645 457 aaKnown RBP12.09□□□□□ -0.47
CLIP1-218ENST00000545889 VPS8Q8N3P4 1428 aa12.09□□□□□ -0.47
CLIP1-218ENST00000545889 IFT140Q96RY7 1462 aa12.07□□□□□ -0.48
CLIP1-218ENST00000545889 GRIN2BQ13224 1484 aa12.07□□□□□ -0.48
CLIP1-218ENST00000545889 NEFMP07197 916 aa12.06□□□□□ -0.48
CLIP1-218ENST00000545889 ZNF608Q9ULD9 1512 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-218ENST00000545889 FHAD1B1AJZ9 1412 aa12.05□□□□□ -0.48
CLIP1-218ENST00000545889 CARMIL2Q6F5E8 1435 aa12.04□□□□□ -0.48
CLIP1-218ENST00000545889 ABCA10Q8WWZ4 1543 aa12.03□□□□□ -0.48
CLIP1-218ENST00000545889 PRXQ9BXM0 1461 aa12.03□□□□□ -0.48
CLIP1-218ENST00000545889 CLSPNQ9HAW4 1339 aa12.02□□□□□ -0.49
CLIP1-218ENST00000545889 SNAPC4Q5SXM2 1469 aa12.01□□□□□ -0.49
CLIP1-218ENST00000545889 OSCARQ8IYS5 282 aa12.01□□□□□ -0.49
CLIP1-218ENST00000545889 RRP7BPQ9NSQ0 103 aa12□□□□□ -0.49
CLIP1-218ENST00000545889 KIF21AQ7Z4S6 1674 aa12□□□□□ -0.49
CLIP1-218ENST00000545889 CFDP1Q9UEE9 299 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-218ENST00000545889 BIVM-ERCC5R4GMW8 1640 aa11.99□□□□□ -0.49
CLIP1-218ENST00000545889 ZBTB47Q9UFB7 747 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-218ENST00000545889 FMN1Q68DA7 1419 aa11.99□□□□□ -0.49
CLIP1-218ENST00000545889 TRHP20396 242 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-218ENST00000545889 KIF21BO75037 1637 aa11.97□□□□□ -0.49
CLIP1-218ENST00000545889 TSPY4P0CV99 314 aa11.96□□□□□ -0.5
CLIP1-218ENST00000545889 TSPY10P0CW01 314 aa11.96□□□□□ -0.5
CLIP1-218ENST00000545889 CYB5RLQ6IPT4 315 aa11.95□□□□□ -0.5
CLIP1-218ENST00000545889 A0A0G2JS52 829 aa11.95□□□□□ -0.5
CLIP1-218ENST00000545889 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.94□□□□□ -0.52e-7■■□□□ 13.3
CLIP1-218ENST00000545889 ERICH3Q5RHP9 1530 aa11.94□□□□□ -0.5
CLIP1-218ENST00000545889 PTPRGP23470 1445 aa11.94□□□□□ -0.5
CLIP1-218ENST00000545889 ARAP1Q96P48 1450 aa11.93□□□□□ -0.5
CLIP1-218ENST00000545889 ARID4BQ4LE39 1312 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-218ENST00000545889 ARHGAP35Q9NRY4 1499 aa11.92□□□□□ -0.5
CLIP1-218ENST00000545889 CCNB3Q8WWL7 1395 aa11.91□□□□□ -0.5
CLIP1-218ENST00000545889 C14orf37Q86TY3 774 aa11.9□□□□□ -0.5
CLIP1-218ENST00000545889 PRG4Q92954 1404 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-218ENST00000545889 SYNJ2O15056 1496 aa11.84□□□□□ -0.51
CLIP1-218ENST00000545889 GRIN2AQ12879 1464 aa11.84□□□□□ -0.51
CLIP1-218ENST00000545889 PLEKHG5O94827 1062 aa11.84□□□□□ -0.51
CLIP1-218ENST00000545889 NPM2Q86SE8 214 aaKnown RBP11.83□□□□□ -0.51
CLIP1-218ENST00000545889 PPP1R15AO75807 674 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-218ENST00000545889 PRDM2Q13029 1718 aa11.82□□□□□ -0.52
CLIP1-218ENST00000545889 WDR62O43379 1518 aa11.82□□□□□ -0.52
CLIP1-218ENST00000545889 HAP1P54257 671 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-218ENST00000545889 MAGI1Q96QZ7 1491 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-218ENST00000545889 KIAA0586Q9BVV6 1533 aa11.81□□□□□ -0.52
CLIP1-218ENST00000545889 CUL7Q14999 1698 aa11.8□□□□□ -0.52
CLIP1-218ENST00000545889 CANXP27824 592 aaKnown RBP11.8□□□□□ -0.52
CLIP1-218ENST00000545889 EIF5BO60841 1220 aaKnown RBP11.8□□□□□ -0.52
CLIP1-218ENST00000545889 HNRNPMP52272 730 aaKnown RBP eCLIP11.8□□□□□ -0.52
CLIP1-218ENST00000545889 IQGAP2Q13576 1575 aa11.77□□□□□ -0.52
CLIP1-218ENST00000545889 CASKIN1Q8WXD9 1431 aa11.77□□□□□ -0.53
CLIP1-218ENST00000545889 ZNF644Q9H582 1327 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-218ENST00000545889 SENP3Q9H4L4 574 aaPredicted RBP11.76□□□□□ -0.53
CLIP1-218ENST00000545889 CCDC18Q5T9S5 1454 aa11.76□□□□□ -0.53
CLIP1-218ENST00000545889 EFCAB2Q5VUJ9 269 aa11.76□□□□□ -0.53
CLIP1-218ENST00000545889 EIF4G3O43432 1585 aaKnown RBP11.76□□□□□ -0.53
CLIP1-218ENST00000545889 PHLDB1Q86UU1 1377 aa11.75□□□□□ -0.53
CLIP1-218ENST00000545889 ANO8Q9HCE9 1232 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-218ENST00000545889 ZBTB7CA1YPR0 619 aa11.74□□□□□ -0.53
CLIP1-218ENST00000545889 SIN3AQ96ST3 1273 aa11.74□□□□□ -0.53
CLIP1-218ENST00000545889 TONSLQ96HA7 1378 aa11.74□□□□□ -0.53
CLIP1-218ENST00000545889 CCDC136Q96JN2 1154 aa11.74□□□□□ -0.53
CLIP1-218ENST00000545889 ZNF316A6NFI3 1004 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-218ENST00000545889 EFCAB5A4FU69 1503 aa11.73□□□□□ -0.53
CLIP1-218ENST00000545889 KDM2AQ9Y2K7 1162 aa11.72□□□□□ -0.53
CLIP1-218ENST00000545889 LRRC9Q6ZRR7 1453 aa11.72□□□□□ -0.53
CLIP1-218ENST00000545889 PLB1Q6P1J6 1458 aa11.72□□□□□ -0.53
CLIP1-218ENST00000545889 ANP32CO43423 234 aa11.72□□□□□ -0.53
CLIP1-218ENST00000545889 FOXD1Q16676 465 aa11.71□□□□□ -0.53
CLIP1-218ENST00000545889 TSHZ2Q9NRE2 1034 aa11.71□□□□□ -0.53
CLIP1-218ENST00000545889 TARBP1Q13395 1621 aaKnown RBP11.71□□□□□ -0.54
CLIP1-218ENST00000545889 CDK13Q14004 1512 aaKnown RBP11.7□□□□□ -0.54
CLIP1-218ENST00000545889 MLECQ14165 292 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms