RNA–Protein interactions for RNA: ENST00000544754.1

LMO3-231, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 555 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-231ENST00000544754 CHMP7Q8WUX9 453 aaPredicted RBP20.22■□□□□ 0.83
LMO3-231ENST00000544754 FBLN2P98095 1184 aa20.2■□□□□ 0.82
LMO3-231ENST00000544754 CEP170Q5SW79 1584 aa20.18■□□□□ 0.82
LMO3-231ENST00000544754 NUP160Q12769 1436 aa20.14■□□□□ 0.81
LMO3-231ENST00000544754 CEP162Q5TB80 1403 aa20.11■□□□□ 0.81
LMO3-231ENST00000544754 IQGAP2Q13576 1575 aa20.11■□□□□ 0.81
LMO3-231ENST00000544754 KIAA0586Q9BVV6 1533 aa20.1■□□□□ 0.81
LMO3-231ENST00000544754 SENP3Q9H4L4 574 aaPredicted RBP20.06■□□□□ 0.8
LMO3-231ENST00000544754 CLIP1P30622 1438 aa20.05■□□□□ 0.8
LMO3-231ENST00000544754 RANGAP1P46060 587 aaPredicted RBP20.03■□□□□ 0.8
LMO3-231ENST00000544754 CLASP1Q7Z460 1538 aa20.02■□□□□ 0.8
LMO3-231ENST00000544754 UGGT2Q9NYU1 1516 aa20.01■□□□□ 0.79
LMO3-231ENST00000544754 SAMD9Q5K651 1589 aa20■□□□□ 0.79
LMO3-231ENST00000544754 ARHGAP35Q9NRY4 1499 aa19.99■□□□□ 0.79
LMO3-231ENST00000544754 EFCAB5A4FU69 1503 aa19.98■□□□□ 0.79
LMO3-231ENST00000544754 SHROOM2Q13796 1616 aa19.97■□□□□ 0.79
LMO3-231ENST00000544754 ARAP1Q96P48 1450 aa19.93■□□□□ 0.78
LMO3-231ENST00000544754 KIAA0556O60303 1618 aa19.92■□□□□ 0.78
LMO3-231ENST00000544754 OSCARQ8IYS5 282 aa19.92■□□□□ 0.78
LMO3-231ENST00000544754 JPH4Q96JJ6 628 aa19.92■□□□□ 0.78
LMO3-231ENST00000544754 DISP1Q96F81 1524 aa19.92■□□□□ 0.78
LMO3-231ENST00000544754 FHOD3Q2V2M9 1422 aa19.88■□□□□ 0.77
LMO3-231ENST00000544754 P3H3Q8IVL6 736 aa19.87■□□□□ 0.77
LMO3-231ENST00000544754 PRG4Q92954 1404 aaPredicted RBP19.85■□□□□ 0.77
LMO3-231ENST00000544754 CARMIL2Q6F5E8 1435 aa19.84■□□□□ 0.77
LMO3-231ENST00000544754 VPS8Q8N3P4 1428 aa19.83■□□□□ 0.76
LMO3-231ENST00000544754 ERCC6L2Q5T890 1561 aa19.83■□□□□ 0.76
LMO3-231ENST00000544754 FMN1Q68DA7 1419 aa19.76■□□□□ 0.75
LMO3-231ENST00000544754 PCF11O94913 1555 aaKnown RBP19.75■□□□□ 0.75
LMO3-231ENST00000544754 TTBK1Q5TCY1 1321 aaPredicted RBP19.7■□□□□ 0.74
LMO3-231ENST00000544754 CASKIN1Q8WXD9 1431 aa19.69■□□□□ 0.74
LMO3-231ENST00000544754 FYCO1Q9BQS8 1478 aa19.69■□□□□ 0.74
LMO3-231ENST00000544754 RAPGEF6Q8TEU7 1601 aa19.68■□□□□ 0.74
LMO3-231ENST00000544754 PTPRGP23470 1445 aa19.68■□□□□ 0.74
LMO3-231ENST00000544754 LRRIQ1Q96JM4 1722 aa19.67■□□□□ 0.74
LMO3-231ENST00000544754 ARHGEF11O15085 1522 aa19.66■□□□□ 0.74
LMO3-231ENST00000544754 ABCA8O94911 1581 aa19.66■□□□□ 0.74
LMO3-231ENST00000544754 HECW1Q76N89 1606 aa19.65■□□□□ 0.74
LMO3-231ENST00000544754 PLB1Q6P1J6 1458 aa19.64■□□□□ 0.73
LMO3-231ENST00000544754 RIMBP3CA6NJZ7 1639 aa19.62■□□□□ 0.73
LMO3-231ENST00000544754 RIMBP3BA6NNM3 1639 aa19.62■□□□□ 0.73
LMO3-231ENST00000544754 RIMBP3Q9UFD9 1639 aa19.62■□□□□ 0.73
LMO3-231ENST00000544754 CFAP43Q8NDM7 1665 aa19.61■□□□□ 0.73
LMO3-231ENST00000544754 ATP1B4Q9UN42 357 aaPredicted RBP19.59■□□□□ 0.73
LMO3-231ENST00000544754 NUP153P49790 1475 aaKnown RBP19.59■□□□□ 0.73
LMO3-231ENST00000544754 TIAM1Q13009 1591 aa19.58■□□□□ 0.73
LMO3-231ENST00000544754 UACAQ9BZF9 1416 aa19.58■□□□□ 0.72
LMO3-231ENST00000544754 MAP3K1Q13233 1512 aa19.56■□□□□ 0.72
LMO3-231ENST00000544754 EPRSP07814 1512 aaKnown RBP19.56■□□□□ 0.72
LMO3-231ENST00000544754 ABCC2Q92887 1545 aa19.56■□□□□ 0.72
LMO3-231ENST00000544754 APLP2Q06481 763 aa19.55■□□□□ 0.72
LMO3-231ENST00000544754 CCDC18Q5T9S5 1454 aa19.54■□□□□ 0.72
LMO3-231ENST00000544754 CDK13Q14004 1512 aaKnown RBP19.54■□□□□ 0.72
LMO3-231ENST00000544754 UHRF1BP1LA0JNW5 1464 aa19.53■□□□□ 0.72
LMO3-231ENST00000544754 ADCY10Q96PN6 1610 aa19.52■□□□□ 0.72
LMO3-231ENST00000544754 ARID3CA6NKF2 412 aa19.49■□□□□ 0.71
LMO3-231ENST00000544754 PPARGC1BQ86YN6 1023 aaKnown RBP19.48■□□□□ 0.71
LMO3-231ENST00000544754 ATP10BO94823 1461 aa19.48■□□□□ 0.71
LMO3-231ENST00000544754 KANK4Q5T7N3 995 aaPredicted RBP19.46■□□□□ 0.71
LMO3-231ENST00000544754 ZCCHC11Q5TAX3 1644 aaKnown RBP19.46■□□□□ 0.71
LMO3-231ENST00000544754 LRRC9Q6ZRR7 1453 aa19.46■□□□□ 0.71
LMO3-231ENST00000544754 MAGI3Q5TCQ9 1506 aa19.45■□□□□ 0.7
LMO3-231ENST00000544754 KDM5BQ9UGL1 1544 aa19.44■□□□□ 0.7
LMO3-231ENST00000544754 EHBP1L1Q8N3D4 1523 aa19.42■□□□□ 0.7
LMO3-231ENST00000544754 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.4■□□□□ 0.7
LMO3-231ENST00000544754 HNRNPUL2Q1KMD3 747 aaKnown RBP19.4■□□□□ 0.7
LMO3-231ENST00000544754 CYB5RLQ6IPT4 315 aa19.4■□□□□ 0.7
LMO3-231ENST00000544754 MTUS2Q5JR59 1369 aa19.39■□□□□ 0.69
LMO3-231ENST00000544754 SUPT6HQ7KZ85 1726 aaKnown RBP19.37■□□□□ 0.69
LMO3-231ENST00000544754 CDK11AQ9UQ88 783 aaPredicted RBP19.36■□□□□ 0.69
LMO3-231ENST00000544754 TROQ12816 1431 aaPredicted RBP19.35■□□□□ 0.69
LMO3-231ENST00000544754 PLEKHD1A6NEE1 506 aa19.32■□□□□ 0.68
LMO3-231ENST00000544754 DNAJC5Q9H3Z4 198 aa19.32■□□□□ 0.68
LMO3-231ENST00000544754 KIF14Q15058 1648 aa19.31■□□□□ 0.68
LMO3-231ENST00000544754 NCOA2Q15596 1464 aa19.29■□□□□ 0.68
LMO3-231ENST00000544754 NPM1P06748 294 aaKnown RBP eCLIP19.29■□□□□ 0.68
LMO3-231ENST00000544754 ASXL2Q76L83 1435 aa19.26■□□□□ 0.67
LMO3-231ENST00000544754 WDR7Q9Y4E6 1490 aa19.26■□□□□ 0.67
LMO3-231ENST00000544754 PHLDB1Q86UU1 1377 aa19.25■□□□□ 0.67
LMO3-231ENST00000544754 MAPKBP1O60336 1514 aa19.24■□□□□ 0.67
LMO3-231ENST00000544754 ABCC10Q5T3U5 1492 aa19.22■□□□□ 0.67
LMO3-231ENST00000544754 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.2■□□□□ 0.66
LMO3-231ENST00000544754 CDC42BPAQ5VT25 1732 aa19.2■□□□□ 0.66
LMO3-231ENST00000544754 TTC37Q6PGP7 1564 aa19.2■□□□□ 0.66
LMO3-231ENST00000544754 ITSN2Q9NZM3 1697 aa19.2■□□□□ 0.66
LMO3-231ENST00000544754 MYOM3Q5VTT5 1437 aa19.19■□□□□ 0.66
LMO3-231ENST00000544754 KCNH8Q96L42 1107 aa19.18■□□□□ 0.66
LMO3-231ENST00000544754 TRIM26Q12899 539 aaPredicted RBP19.17■□□□□ 0.66
LMO3-231ENST00000544754 CCNB3Q8WWL7 1395 aa19.17■□□□□ 0.66
LMO3-231ENST00000544754 MYO5CQ9NQX4 1742 aa19.17■□□□□ 0.66
LMO3-231ENST00000544754 RRBP1Q9P2E9 1410 aaKnown RBP19.17■□□□□ 0.66
LMO3-231ENST00000544754 ABCA9Q8IUA7 1624 aa19.16■□□□□ 0.66
LMO3-231ENST00000544754 PREX2Q70Z35 1606 aa19.15■□□□□ 0.66
LMO3-231ENST00000544754 FGD6Q6ZV73 1430 aa19.15■□□□□ 0.66
LMO3-231ENST00000544754 GPATCH8Q9UKJ3 1502 aaKnown RBP19.15■□□□□ 0.66
LMO3-231ENST00000544754 CDC42BPBQ9Y5S2 1711 aa19.14■□□□□ 0.66
LMO3-231ENST00000544754 PTPN23Q9H3S7 1636 aa19.12■□□□□ 0.65
LMO3-231ENST00000544754 MIA2Q96PC5 1412 aa19.11■□□□□ 0.65
LMO3-231ENST00000544754 DIP2BQ9P265 1576 aa19.1■□□□□ 0.65
LMO3-231ENST00000544754 PLPPR3Q6T4P5 718 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms