RNA–Protein interactions for RNA: ENST00000544454.5

LTBR-213, Transcript of lymphotoxin beta receptor, humanhuman

TSL 5

Gene LTBR, Length 632 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-213ENST00000544454 JPH4Q96JJ6 628 aa22.87■■□□□ 1.25
LTBR-213ENST00000544454 KIAA0586Q9BVV6 1533 aa22.85■■□□□ 1.25
LTBR-213ENST00000544454 PRXQ9BXM0 1461 aa22.84■■□□□ 1.25
LTBR-213ENST00000544454 CYB5RLQ6IPT4 315 aa22.82■■□□□ 1.24
LTBR-213ENST00000544454 FAM9AQ8IZU1 332 aaPredicted RBP22.79■■□□□ 1.24
LTBR-213ENST00000544454 SHROOM2Q13796 1616 aa22.77■■□□□ 1.24
LTBR-213ENST00000544454 ARAP1Q96P48 1450 aa22.77■■□□□ 1.24
LTBR-213ENST00000544454 PRG4Q92954 1404 aaPredicted RBP22.75■■□□□ 1.23
LTBR-213ENST00000544454 ERCC6L2Q5T890 1561 aa22.69■■□□□ 1.22
LTBR-213ENST00000544454 IQGAP2Q13576 1575 aa22.67■■□□□ 1.22
LTBR-213ENST00000544454 CARMIL2Q6F5E8 1435 aa22.62■■□□□ 1.21
LTBR-213ENST00000544454 UGGT2Q9NYU1 1516 aa22.58■■□□□ 1.21
LTBR-213ENST00000544454 KIF21BO75037 1637 aa22.56■■□□□ 1.2
LTBR-213ENST00000544454 DISP1Q96F81 1524 aa22.54■■□□□ 1.2
LTBR-213ENST00000544454 TNIKQ9UKE5 1360 aa22.53■■□□□ 1.2
LTBR-213ENST00000544454 PTPRGP23470 1445 aa22.53■■□□□ 1.2
LTBR-213ENST00000544454 CTTNBP2Q8WZ74 1663 aa22.52■■□□□ 1.2
LTBR-213ENST00000544454 GOLGA3Q08378 1498 aa22.49■■□□□ 1.19
LTBR-213ENST00000544454 UBTFP17480 764 aaKnown RBP22.49■■□□□ 1.19
LTBR-213ENST00000544454 EHMT2Q96KQ7 1210 aa22.45■■□□□ 1.18
LTBR-213ENST00000544454 TTBK1Q5TCY1 1321 aaPredicted RBP22.45■■□□□ 1.18
LTBR-213ENST00000544454 KIAA0556O60303 1618 aa22.42■■□□□ 1.18
LTBR-213ENST00000544454 NPM1P06748 294 aaKnown RBP eCLIP22.4■■□□□ 1.18
LTBR-213ENST00000544454 RANGAP1P46060 587 aaPredicted RBP22.37■■□□□ 1.17
LTBR-213ENST00000544454 P3H3Q8IVL6 736 aa22.37■■□□□ 1.17
LTBR-213ENST00000544454 UACAQ9BZF9 1416 aa22.36■■□□□ 1.17
LTBR-213ENST00000544454 UHRF1BP1LA0JNW5 1464 aa22.33■■□□□ 1.16
LTBR-213ENST00000544454 ADCY10Q96PN6 1610 aa22.32■■□□□ 1.16
LTBR-213ENST00000544454 TRHP20396 242 aaPredicted RBP22.32■■□□□ 1.16
LTBR-213ENST00000544454 SAMD9Q5K651 1589 aa22.31■■□□□ 1.16
LTBR-213ENST00000544454 EFCAB5A4FU69 1503 aa22.26■■□□□ 1.15
LTBR-213ENST00000544454 ABCC2Q92887 1545 aa22.26■■□□□ 1.15
LTBR-213ENST00000544454 PLB1Q6P1J6 1458 aa22.25■■□□□ 1.15
LTBR-213ENST00000544454 FHOD3Q2V2M9 1422 aa22.23■■□□□ 1.15
LTBR-213ENST00000544454 ABCA8O94911 1581 aa22.21■■□□□ 1.15
LTBR-213ENST00000544454 MAPKBP1O60336 1514 aa22.21■■□□□ 1.15
LTBR-213ENST00000544454 KDM5BQ9UGL1 1544 aa22.21■■□□□ 1.15
LTBR-213ENST00000544454 ARHGAP35Q9NRY4 1499 aa22.18■■□□□ 1.14
LTBR-213ENST00000544454 LOC105371045A0A1W2PR82 267 aa22.14■■□□□ 1.13
LTBR-213ENST00000544454 ABCC10Q5T3U5 1492 aa22.13■■□□□ 1.13
LTBR-213ENST00000544454 ASXL2Q76L83 1435 aa22.13■■□□□ 1.13
LTBR-213ENST00000544454 FAM69CQ0P6D2 419 aa22.12■■□□□ 1.13
LTBR-213ENST00000544454 FMN1Q68DA7 1419 aa22.11■■□□□ 1.13
LTBR-213ENST00000544454 CLIP1P30622 1438 aa22.1■■□□□ 1.13
LTBR-213ENST00000544454 ATP10BO94823 1461 aa22.09■■□□□ 1.13
LTBR-213ENST00000544454 ZCCHC11Q5TAX3 1644 aaKnown RBP22.08■■□□□ 1.13
LTBR-213ENST00000544454 RAPGEF6Q8TEU7 1601 aa22.07■■□□□ 1.12
LTBR-213ENST00000544454 ARID3CA6NKF2 412 aa22.06■■□□□ 1.12
LTBR-213ENST00000544454 NUP153P49790 1475 aaKnown RBP22.05■■□□□ 1.12
LTBR-213ENST00000544454 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.02■■□□□ 1.12
LTBR-213ENST00000544454 HNRNPUL2Q1KMD3 747 aaKnown RBP22.02■■□□□ 1.12
LTBR-213ENST00000544454 DIP2BQ9P265 1576 aa22.02■■□□□ 1.12
LTBR-213ENST00000544454 WDR7Q9Y4E6 1490 aa22.02■■□□□ 1.12
LTBR-213ENST00000544454 CEP162Q5TB80 1403 aa22■■□□□ 1.11
LTBR-213ENST00000544454 ATP1B4Q9UN42 357 aaPredicted RBP22■■□□□ 1.11
LTBR-213ENST00000544454 EPRSP07814 1512 aaKnown RBP21.99■■□□□ 1.11
LTBR-213ENST00000544454 KCNH8Q96L42 1107 aa21.98■■□□□ 1.11
LTBR-213ENST00000544454 PLEKHD1A6NEE1 506 aa21.97■■□□□ 1.11
LTBR-213ENST00000544454 KIF13AQ9H1H9 1805 aa21.96■■□□□ 1.11
LTBR-213ENST00000544454 GLI2P10070 1586 aa21.96■■□□□ 1.11
LTBR-213ENST00000544454 CASKIN1Q8WXD9 1431 aa21.94■■□□□ 1.1
LTBR-213ENST00000544454 CDK11AQ9UQ88 783 aaPredicted RBP21.91■■□□□ 1.1
LTBR-213ENST00000544454 HECW1Q76N89 1606 aa21.91■■□□□ 1.1
LTBR-213ENST00000544454 AEBP2Q6ZN18 517 aaPredicted RBP21.88■■□□□ 1.09
LTBR-213ENST00000544454 CDK13Q14004 1512 aaKnown RBP21.87■■□□□ 1.09
LTBR-213ENST00000544454 FYCO1Q9BQS8 1478 aa21.86■■□□□ 1.09
LTBR-213ENST00000544454 CD109Q6YHK3 1445 aa21.84■■□□□ 1.09
LTBR-213ENST00000544454 PCF11O94913 1555 aaKnown RBP21.82■■□□□ 1.08
LTBR-213ENST00000544454 CCDC18Q5T9S5 1454 aa21.82■■□□□ 1.08
LTBR-213ENST00000544454 MAP3K4Q9Y6R4 1608 aa21.81■■□□□ 1.08
LTBR-213ENST00000544454 TEX14Q8IWB6 1497 aa21.78■■□□□ 1.08
LTBR-213ENST00000544454 MAGI3Q5TCQ9 1506 aa21.78■■□□□ 1.08
LTBR-213ENST00000544454 CFAP43Q8NDM7 1665 aa21.76■■□□□ 1.07
LTBR-213ENST00000544454 TROQ12816 1431 aaPredicted RBP21.76■■□□□ 1.07
LTBR-213ENST00000544454 TSPOAP1O95153 1857 aa21.75■■□□□ 1.07
LTBR-213ENST00000544454 ABCA9Q8IUA7 1624 aa21.75■■□□□ 1.07
LTBR-213ENST00000544454 VPS8Q8N3P4 1428 aa21.74■■□□□ 1.07
LTBR-213ENST00000544454 PPRC1Q5VV67 1664 aaKnown RBP21.72■■□□□ 1.07
LTBR-213ENST00000544454 LRRIQ1Q96JM4 1722 aa21.71■■□□□ 1.07
LTBR-213ENST00000544454 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.7■■□□□ 1.06
LTBR-213ENST00000544454 PHLDB1Q86UU1 1377 aa21.69■■□□□ 1.06
LTBR-213ENST00000544454 KDM6BO15054 1643 aa21.64■■□□□ 1.05
LTBR-213ENST00000544454 NEO1Q92859 1461 aa21.64■■□□□ 1.05
LTBR-213ENST00000544454 PLCH2O75038 1416 aa21.63■■□□□ 1.05
LTBR-213ENST00000544454 MTUS2Q5JR59 1369 aa21.63■■□□□ 1.05
LTBR-213ENST00000544454 COL17A1Q9UMD9 1497 aaPredicted RBP21.63■■□□□ 1.05
LTBR-213ENST00000544454 KIF14Q15058 1648 aa21.62■■□□□ 1.05
LTBR-213ENST00000544454 TTC37Q6PGP7 1564 aa21.62■■□□□ 1.05
LTBR-213ENST00000544454 EFCAB2Q5VUJ9 269 aa21.6■■□□□ 1.05
LTBR-213ENST00000544454 ARAP3Q8WWN8 1544 aa21.6■■□□□ 1.05
LTBR-213ENST00000544454 FANCAO15360 1455 aa21.58■■□□□ 1.05
LTBR-213ENST00000544454 AKNAQ7Z591 1439 aa21.56■■□□□ 1.04
LTBR-213ENST00000544454 MAP3K1Q13233 1512 aa21.56■■□□□ 1.04
LTBR-213ENST00000544454 APLP2Q06481 763 aa21.56■■□□□ 1.04
LTBR-213ENST00000544454 TIAM1Q13009 1591 aa21.54■■□□□ 1.04
LTBR-213ENST00000544454 EHBP1L1Q8N3D4 1523 aa21.52■■□□□ 1.04
LTBR-213ENST00000544454 RAPGEF3O95398 923 aa21.51■■□□□ 1.03
LTBR-213ENST00000544454 CFAP74Q9C0B2 1584 aa21.51■■□□□ 1.03
LTBR-213ENST00000544454 LRRC9Q6ZRR7 1453 aa21.5■■□□□ 1.03
LTBR-213ENST00000544454 GPATCH8Q9UKJ3 1502 aaKnown RBP21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms