RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 JPH4Q96JJ6 628 aa22.75■■□□□ 1.23
RTN3-212ENST00000543123 IGF1RP08069 1367 aa22.75■■□□□ 1.23
RTN3-212ENST00000543123 AEBP2Q6ZN18 517 aaPredicted RBP22.72■■□□□ 1.23
RTN3-212ENST00000543123 KIAA0586Q9BVV6 1533 aa22.68■■□□□ 1.22
RTN3-212ENST00000543123 CARMIL1Q5VZK9 1371 aa22.63■■□□□ 1.21
RTN3-212ENST00000543123 NPM1P06748 294 aaKnown RBP eCLIP22.55■■□□□ 1.2
RTN3-212ENST00000543123 IQGAP2Q13576 1575 aa22.5■■□□□ 1.19
RTN3-212ENST00000543123 CARMIL2Q6F5E8 1435 aa22.5■■□□□ 1.19
RTN3-212ENST00000543123 ADCY10Q96PN6 1610 aa22.49■■□□□ 1.19
RTN3-212ENST00000543123 MAPKBP1O60336 1514 aa22.48■■□□□ 1.19
RTN3-212ENST00000543123 RAPGEF2Q9Y4G8 1499 aa22.46■■□□□ 1.19
RTN3-212ENST00000543123 KIF13AQ9H1H9 1805 aa22.45■■□□□ 1.19
RTN3-212ENST00000543123 PTPRGP23470 1445 aa22.44■■□□□ 1.18
RTN3-212ENST00000543123 TNIKQ9UKE5 1360 aa22.43■■□□□ 1.18
RTN3-212ENST00000543123 ABCC10Q5T3U5 1492 aa22.42■■□□□ 1.18
RTN3-212ENST00000543123 FAM69CQ0P6D2 419 aa22.37■■□□□ 1.17
RTN3-212ENST00000543123 DIP2BQ9P265 1576 aa22.37■■□□□ 1.17
RTN3-212ENST00000543123 UGGT2Q9NYU1 1516 aa22.35■■□□□ 1.17
RTN3-212ENST00000543123 TTBK1Q5TCY1 1321 aaPredicted RBP22.33■■□□□ 1.17
RTN3-212ENST00000543123 DISP1Q96F81 1524 aa22.33■■□□□ 1.17
RTN3-212ENST00000543123 ABCC2Q92887 1545 aa22.32■■□□□ 1.16
RTN3-212ENST00000543123 UHRF1BP1LA0JNW5 1464 aa22.3■■□□□ 1.16
RTN3-212ENST00000543123 CTTNBP2Q8WZ74 1663 aa22.28■■□□□ 1.16
RTN3-212ENST00000543123 UACAQ9BZF9 1416 aa22.28■■□□□ 1.16
RTN3-212ENST00000543123 KIAA0556O60303 1618 aa22.28■■□□□ 1.16
RTN3-212ENST00000543123 PLB1Q6P1J6 1458 aa22.25■■□□□ 1.15
RTN3-212ENST00000543123 PRXQ9BXM0 1461 aa22.24■■□□□ 1.15
RTN3-212ENST00000543123 GOLGA3Q08378 1498 aa22.23■■□□□ 1.15
RTN3-212ENST00000543123 ASXL2Q76L83 1435 aa22.22■■□□□ 1.15
RTN3-212ENST00000543123 KDM5BQ9UGL1 1544 aa22.18■■□□□ 1.14
RTN3-212ENST00000543123 GLI2P10070 1586 aa22.16■■□□□ 1.14
RTN3-212ENST00000543123 TSPOAP1O95153 1857 aa22.16■■□□□ 1.14
RTN3-212ENST00000543123 KDM6BO15054 1643 aa22.16■■□□□ 1.14
RTN3-212ENST00000543123 ZCCHC11Q5TAX3 1644 aaKnown RBP22.13■■□□□ 1.13
RTN3-212ENST00000543123 FAM9AQ8IZU1 332 aaPredicted RBP22.11■■□□□ 1.13
RTN3-212ENST00000543123 EEA1Q15075 1411 aa22.11■■□□□ 1.13
RTN3-212ENST00000543123 CSRNP3Q8WYN3 585 aa22.09■■□□□ 1.13
RTN3-212ENST00000543123 EPRSP07814 1512 aaKnown RBP22.08■■□□□ 1.13
RTN3-212ENST00000543123 WDR7Q9Y4E6 1490 aa22.05■■□□□ 1.12
RTN3-212ENST00000543123 ABCA8O94911 1581 aa22.04■■□□□ 1.12
RTN3-212ENST00000543123 TEX14Q8IWB6 1497 aa22.03■■□□□ 1.12
RTN3-212ENST00000543123 MAP3K4Q9Y6R4 1608 aa22.03■■□□□ 1.12
RTN3-212ENST00000543123 PPRC1Q5VV67 1664 aaKnown RBP22.02■■□□□ 1.12
RTN3-212ENST00000543123 CHIC1Q5VXU3 224 aa21.99■■□□□ 1.11
RTN3-212ENST00000543123 SAMD9Q5K651 1589 aa21.96■■□□□ 1.11
RTN3-212ENST00000543123 CFAP43Q8NDM7 1665 aa21.91■■□□□ 1.1
RTN3-212ENST00000543123 P3H3Q8IVL6 736 aa21.91■■□□□ 1.1
RTN3-212ENST00000543123 CD109Q6YHK3 1445 aa21.89■■□□□ 1.09
RTN3-212ENST00000543123 KIF21BO75037 1637 aa21.88■■□□□ 1.09
RTN3-212ENST00000543123 MAGI3Q5TCQ9 1506 aa21.87■■□□□ 1.09
RTN3-212ENST00000543123 KCNH8Q96L42 1107 aa21.86■■□□□ 1.09
RTN3-212ENST00000543123 RAPGEF6Q8TEU7 1601 aa21.86■■□□□ 1.09
RTN3-212ENST00000543123 ATP10BO94823 1461 aa21.84■■□□□ 1.09
RTN3-212ENST00000543123 COL17A1Q9UMD9 1497 aaPredicted RBP21.83■■□□□ 1.08
RTN3-212ENST00000543123 EFCAB5A4FU69 1503 aa21.82■■□□□ 1.08
RTN3-212ENST00000543123 ARID3CA6NKF2 412 aa21.8■■□□□ 1.08
RTN3-212ENST00000543123 KDM4FA0A1W2PPD8 638 aa21.79■■□□□ 1.08
RTN3-212ENST00000543123 FHOD3Q2V2M9 1422 aa21.79■■□□□ 1.08
RTN3-212ENST00000543123 RANGAP1P46060 587 aaPredicted RBP21.78■■□□□ 1.08
RTN3-212ENST00000543123 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.75■■□□□ 1.07
RTN3-212ENST00000543123 HNRNPUL2Q1KMD3 747 aaKnown RBP21.75■■□□□ 1.07
RTN3-212ENST00000543123 ABCA9Q8IUA7 1624 aa21.75■■□□□ 1.07
RTN3-212ENST00000543123 NUP153P49790 1475 aaKnown RBP21.75■■□□□ 1.07
RTN3-212ENST00000543123 PHLDB1Q86UU1 1377 aa21.73■■□□□ 1.07
RTN3-212ENST00000543123 ADGRL1O94910 1474 aa21.72■■□□□ 1.07
RTN3-212ENST00000543123 ARAP3Q8WWN8 1544 aa21.7■■□□□ 1.06
RTN3-212ENST00000543123 UBTFP17480 764 aaKnown RBP21.68■■□□□ 1.06
RTN3-212ENST00000543123 NEO1Q92859 1461 aa21.65■■□□□ 1.06
RTN3-212ENST00000543123 PLEKHD1A6NEE1 506 aa21.65■■□□□ 1.06
RTN3-212ENST00000543123 FMN1Q68DA7 1419 aa21.62■■□□□ 1.05
RTN3-212ENST00000543123 EHMT2Q96KQ7 1210 aa21.58■■□□□ 1.05
RTN3-212ENST00000543123 CFAP74Q9C0B2 1584 aa21.57■■□□□ 1.04
RTN3-212ENST00000543123 HECW1Q76N89 1606 aa21.57■■□□□ 1.04
RTN3-212ENST00000543123 ARHGAP35Q9NRY4 1499 aa21.55■■□□□ 1.04
RTN3-212ENST00000543123 CDK13Q14004 1512 aaKnown RBP21.54■■□□□ 1.04
RTN3-212ENST00000543123 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.52■■□□□ 1.041e-77■■□□□ 12.1
RTN3-212ENST00000543123 FANCAO15360 1455 aa21.52■■□□□ 1.03
RTN3-212ENST00000543123 CDK11AQ9UQ88 783 aaPredicted RBP21.51■■□□□ 1.03
RTN3-212ENST00000543123 TTC37Q6PGP7 1564 aa21.5■■□□□ 1.03
RTN3-212ENST00000543123 RAPGEF3O95398 923 aa21.5■■□□□ 1.03
RTN3-212ENST00000543123 ATP1B4Q9UN42 357 aaPredicted RBP21.5■■□□□ 1.03
RTN3-212ENST00000543123 FRMPD1Q5SYB0 1578 aa21.48■■□□□ 1.03
RTN3-212ENST00000543123 DENND4BO75064 1496 aaPredicted RBP21.48■■□□□ 1.03
RTN3-212ENST00000543123 AKNAQ7Z591 1439 aa21.47■■□□□ 1.03
RTN3-212ENST00000543123 RICTORQ6R327 1708 aa21.43■■□□□ 1.02
RTN3-212ENST00000543123 ARHGEF40Q8TER5 1519 aa21.43■■□□□ 1.02
RTN3-212ENST00000543123 CLIP1P30622 1438 aa21.42■■□□□ 1.02
RTN3-212ENST00000543123 KIF14Q15058 1648 aa21.41■■□□□ 1.02
RTN3-212ENST00000543123 PLCH2O75038 1416 aa21.41■■□□□ 1.02
RTN3-212ENST00000543123 ZMYM4Q5VZL5 1548 aa21.4■■□□□ 1.02
RTN3-212ENST00000543123 TROQ12816 1431 aaPredicted RBP21.39■■□□□ 1.02
RTN3-212ENST00000543123 MYO5CQ9NQX4 1742 aa21.39■■□□□ 1.01
RTN3-212ENST00000543123 ARID4BQ4LE39 1312 aaPredicted RBP21.38■■□□□ 1.01
RTN3-212ENST00000543123 HECW2Q9P2P5 1572 aa21.38■■□□□ 1.01
RTN3-212ENST00000543123 CCDC18Q5T9S5 1454 aa21.38■■□□□ 1.01
RTN3-212ENST00000543123 MAGI2Q86UL8 1455 aa21.38■■□□□ 1.01
RTN3-212ENST00000543123 ADAMTSL3P82987 1691 aa21.37■■□□□ 1.01
RTN3-212ENST00000543123 CASKIN1Q8WXD9 1431 aa21.36■■□□□ 1.01
RTN3-212ENST00000543123 EFCAB2Q5VUJ9 269 aa21.35■■□□□ 1.01
RTN3-212ENST00000543123 BCORL1Q5H9F3 1711 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms