RNA–Protein interactions for RNA: ENST00000541600.5

EPHA4-214, Transcript of EPH receptor A4, humanhuman

TSL 2

Gene EPHA4, Length 558 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-214ENST00000541600 FBLN2P98095 1184 aa11.01□□□□□ -0.65
EPHA4-214ENST00000541600 CADPSQ9ULU8 1353 aa11□□□□□ -0.65
EPHA4-214ENST00000541600 BAZ1BQ9UIG0 1483 aaKnown RBP11□□□□□ -0.65
EPHA4-214ENST00000541600 SMARCA4P51532 1647 aa10.98□□□□□ -0.65
EPHA4-214ENST00000541600 BBXQ8WY36 941 aaPredicted RBP10.95□□□□□ -0.66
EPHA4-214ENST00000541600 KDM2AQ9Y2K7 1162 aa10.95□□□□□ -0.66
EPHA4-214ENST00000541600 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.94□□□□□ -0.66
EPHA4-214ENST00000541600 ZNF608Q9ULD9 1512 aaPredicted RBP10.91□□□□□ -0.66
EPHA4-214ENST00000541600 TPRNQ4KMQ1 711 aa10.9□□□□□ -0.66
EPHA4-214ENST00000541600 MROH2BQ7Z745 1585 aa10.9□□□□□ -0.67
EPHA4-214ENST00000541600 PEG3Q9GZU2 1588 aa10.89□□□□□ -0.67
EPHA4-214ENST00000541600 URB2Q14146 1524 aaKnown RBP10.89□□□□□ -0.67
EPHA4-214ENST00000541600 NPM1P06748 294 aaKnown RBP eCLIP10.87□□□□□ -0.67
EPHA4-214ENST00000541600 PAXIP1Q6ZW49 1069 aaPredicted RBP10.86□□□□□ -0.67
EPHA4-214ENST00000541600 SPOCK2Q92563 424 aa10.86□□□□□ -0.67
EPHA4-214ENST00000541600 ECM2O94769 699 aaPredicted RBP10.85□□□□□ -0.67
EPHA4-214ENST00000541600 CEP164Q9UPV0 1460 aa10.85□□□□□ -0.67
EPHA4-214ENST00000541600 POLA2Q14181 598 aa10.84□□□□□ -0.67
EPHA4-214ENST00000541600 FANCD2Q9BXW9 1451 aa10.84□□□□□ -0.67
EPHA4-214ENST00000541600 KDM4FA0A1W2PPD8 638 aa10.83□□□□□ -0.68
EPHA4-214ENST00000541600 CFAP44Q96MT7 982 aa10.82□□□□□ -0.68
EPHA4-214ENST00000541600 KLHL34Q8N239 644 aa10.81□□□□□ -0.68
EPHA4-214ENST00000541600 WIZO95785 1651 aa10.8□□□□□ -0.68
EPHA4-214ENST00000541600 HRCP23327 699 aa10.77□□□□□ -0.69
EPHA4-214ENST00000541600 SPINK5Q9NQ38 1064 aaPredicted RBP10.77□□□□□ -0.69
EPHA4-214ENST00000541600 TOP2AP11388 1531 aaKnown RBP10.76□□□□□ -0.69
EPHA4-214ENST00000541600 LOC105371045A0A1W2PR82 267 aa10.75□□□□□ -0.69
EPHA4-214ENST00000541600 SPRYD3Q8NCJ5 442 aa10.75□□□□□ -0.69
EPHA4-214ENST00000541600 RGL2O15211 777 aa10.74□□□□□ -0.69
EPHA4-214ENST00000541600 TSHZ2Q9NRE2 1034 aa10.73□□□□□ -0.69
EPHA4-214ENST00000541600 ZBTB12Q9Y330 459 aaPredicted RBP10.72□□□□□ -0.69
EPHA4-214ENST00000541600 CHD1O14646 1710 aa10.71□□□□□ -0.69
EPHA4-214ENST00000541600 CFTRP13569 1480 aa10.71□□□□□ -0.69
EPHA4-214ENST00000541600 STAG3Q9UJ98 1225 aa10.71□□□□□ -0.69
EPHA4-214ENST00000541600 AQRO60306 1485 aaKnown RBP eCLIP10.69□□□□□ -0.7
EPHA4-214ENST00000541600 IFT140Q96RY7 1462 aa10.68□□□□□ -0.7
EPHA4-214ENST00000541600 TRIM26Q12899 539 aaPredicted RBP10.67□□□□□ -0.7
EPHA4-214ENST00000541600 EIF4G3O43432 1585 aaKnown RBP10.65□□□□□ -0.7
EPHA4-214ENST00000541600 CAPN15O75808 1086 aa10.65□□□□□ -0.7
EPHA4-214ENST00000541600 PLCD3Q8N3E9 789 aa10.65□□□□□ -0.7
EPHA4-214ENST00000541600 CLASP1Q7Z460 1538 aa10.64□□□□□ -0.71
EPHA4-214ENST00000541600 CCDC88BA6NC98 1476 aa10.64□□□□□ -0.71
EPHA4-214ENST00000541600 PCGF6Q9BYE7 350 aa10.64□□□□□ -0.71
EPHA4-214ENST00000541600 CHGAP10645 457 aaKnown RBP10.6□□□□□ -0.71
EPHA4-214ENST00000541600 ZNF692Q9BU19 519 aaPredicted RBP10.58□□□□□ -0.72
EPHA4-214ENST00000541600 EEA1Q15075 1411 aa10.58□□□□□ -0.72
EPHA4-214ENST00000541600 GAPVD1Q14C86 1478 aa10.57□□□□□ -0.72
EPHA4-214ENST00000541600 NBR1Q14596 966 aa10.57□□□□□ -0.72
EPHA4-214ENST00000541600 MIER1Q8N108 512 aa10.57□□□□□ -0.72
EPHA4-214ENST00000541600 TOPBP1Q92547 1522 aa10.57□□□□□ -0.72
EPHA4-214ENST00000541600 ILDR2Q71H61 639 aa10.56□□□□□ -0.72
EPHA4-214ENST00000541600 TARBP1Q13395 1621 aaKnown RBP10.55□□□□□ -0.72
EPHA4-214ENST00000541600 RNF39Q9H2S5 420 aa10.55□□□□□ -0.72
EPHA4-214ENST00000541600 ABCB7O75027 752 aa10.54□□□□□ -0.72
EPHA4-214ENST00000541600 ERCC6L2Q5T890 1561 aa10.54□□□□□ -0.72
EPHA4-214ENST00000541600 SSUH2Q9Y2M2 353 aa10.53□□□□□ -0.72
EPHA4-214ENST00000541600 KIF13AQ9H1H9 1805 aa10.52□□□□□ -0.73
EPHA4-214ENST00000541600 FBXO41Q8TF61 875 aa10.52□□□□□ -0.73
EPHA4-214ENST00000541600 CIZ1Q9ULV3 898 aaPredicted RBP10.52□□□□□ -0.73
EPHA4-214ENST00000541600 SPDYE2BA6NHP3 402 aa10.51□□□□□ -0.73
EPHA4-214ENST00000541600 SPDYE6P0CI01 402 aa10.51□□□□□ -0.73
EPHA4-214ENST00000541600 ZEB1P37275 1124 aaPredicted RBP10.51□□□□□ -0.73
EPHA4-214ENST00000541600 SPDYE2Q495Y8 402 aa10.51□□□□□ -0.73
EPHA4-214ENST00000541600 TDRD9Q8NDG6 1382 aaKnown RBP10.51□□□□□ -0.73
EPHA4-214ENST00000541600 HS6ST3Q8IZP7 471 aa10.5□□□□□ -0.73
EPHA4-214ENST00000541600 WRNQ14191 1432 aaPredicted RBP eCLIP10.49□□□□□ -0.73
EPHA4-214ENST00000541600 HECW2Q9P2P5 1572 aa10.48□□□□□ -0.73
EPHA4-214ENST00000541600 ZBTB47Q9UFB7 747 aaPredicted RBP10.48□□□□□ -0.73
EPHA4-214ENST00000541600 SNAPC4Q5SXM2 1469 aa10.48□□□□□ -0.73
EPHA4-214ENST00000541600 RAD54L2Q9Y4B4 1467 aa10.48□□□□□ -0.73
EPHA4-214ENST00000541600 C1QBPQ07021 282 aaKnown RBP10.46□□□□□ -0.73
EPHA4-214ENST00000541600 TIMELESSQ9UNS1 1208 aa10.46□□□□□ -0.73
EPHA4-214ENST00000541600 TNIKQ9UKE5 1360 aa10.46□□□□□ -0.74
EPHA4-214ENST00000541600 ABCC8Q09428 1581 aa10.46□□□□□ -0.74
EPHA4-214ENST00000541600 SOCS7O14512 581 aa10.45□□□□□ -0.74
EPHA4-214ENST00000541600 FAM9AQ8IZU1 332 aaPredicted RBP10.45□□□□□ -0.74
EPHA4-214ENST00000541600 LMTK3Q96Q04 1460 aa10.44□□□□□ -0.74
EPHA4-214ENST00000541600 CHMP7Q8WUX9 453 aaPredicted RBP10.44□□□□□ -0.74
EPHA4-214ENST00000541600 PLEKHG5O94827 1062 aa10.43□□□□□ -0.74
EPHA4-214ENST00000541600 POLA1P09884 1462 aaPredicted RBP10.42□□□□□ -0.74
EPHA4-214ENST00000541600 TULP1O00294 542 aaPredicted RBP10.42□□□□□ -0.74
EPHA4-214ENST00000541600 SYNJ1O43426 1573 aa10.42□□□□□ -0.74
EPHA4-214ENST00000541600 FAM69CQ0P6D2 419 aa10.41□□□□□ -0.74
EPHA4-214ENST00000541600 DNMBPQ6XZF7 1577 aa10.39□□□□□ -0.75
EPHA4-214ENST00000541600 SYNJ2O15056 1496 aa10.39□□□□□ -0.75
EPHA4-214ENST00000541600 ADGRL1O94910 1474 aa10.39□□□□□ -0.75
EPHA4-214ENST00000541600 GTF3C3Q9Y5Q9 886 aa10.39□□□□□ -0.75
EPHA4-214ENST00000541600 RNF25Q96BH1 459 aaPredicted RBP10.38□□□□□ -0.75
EPHA4-214ENST00000541600 SOGA1O94964 1423 aa10.38□□□□□ -0.75
EPHA4-214ENST00000541600 ABCC10Q5T3U5 1492 aa10.37□□□□□ -0.75
EPHA4-214ENST00000541600 KIF21BO75037 1637 aa10.36□□□□□ -0.75
EPHA4-214ENST00000541600 GOLGA3Q08378 1498 aa10.36□□□□□ -0.75
EPHA4-214ENST00000541600 NKX1-1Q15270 411 aaPredicted RBP10.35□□□□□ -0.75
EPHA4-214ENST00000541600 CEP162Q5TB80 1403 aa10.34□□□□□ -0.75
EPHA4-214ENST00000541600 ERICH6Q7L0X2 663 aa10.34□□□□□ -0.75
EPHA4-214ENST00000541600 KDM6BO15054 1643 aa10.33□□□□□ -0.76
EPHA4-214ENST00000541600 PRDM2Q13029 1718 aa10.33□□□□□ -0.76
EPHA4-214ENST00000541600 GTPBP6O43824 516 aaPredicted RBP10.33□□□□□ -0.76
EPHA4-214ENST00000541600 GSE1Q14687 1217 aa10.33□□□□□ -0.76
EPHA4-214ENST00000541600 MAGI1Q96QZ7 1491 aaPredicted RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms