RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 TNIKQ9UKE5 1360 aa19.72■□□□□ 0.75
SMARCA4-207ENST00000541122 SLC24A1O60721 1099 aa19.71■□□□□ 0.75
SMARCA4-207ENST00000541122 MTUS2Q5JR59 1369 aa19.68■□□□□ 0.74
SMARCA4-207ENST00000541122 ARID3CA6NKF2 412 aa19.68■□□□□ 0.74
SMARCA4-207ENST00000541122 HIRIP3Q9BW71 556 aaPredicted RBP19.67■□□□□ 0.74
SMARCA4-207ENST00000541122 DEKP35659 375 aaKnown RBP19.66■□□□□ 0.74
SMARCA4-207ENST00000541122 RBM19Q9Y4C8 960 aaKnown RBP19.64■□□□□ 0.74
SMARCA4-207ENST00000541122 CCER2I3L3R5 266 aa19.64■□□□□ 0.73
SMARCA4-207ENST00000541122 CHIC2Q9UKJ5 165 aa19.64■□□□□ 0.73
SMARCA4-207ENST00000541122 MYH16Q9H6N6 1097 aa19.63■□□□□ 0.73
SMARCA4-207ENST00000541122 NCLP19338 710 aaKnown RBP19.62■□□□□ 0.73
SMARCA4-207ENST00000541122 FBLN2P98095 1184 aa19.6■□□□□ 0.73
SMARCA4-207ENST00000541122 NAP1L5Q96NT1 182 aaPredicted RBP19.6■□□□□ 0.73
SMARCA4-207ENST00000541122 RSF1Q96T23 1441 aaPredicted RBP19.6■□□□□ 0.73
SMARCA4-207ENST00000541122 TIMELESSQ9UNS1 1208 aa19.6■□□□□ 0.73
SMARCA4-207ENST00000541122 LAS1LQ9Y4W2 734 aaKnown RBP19.58■□□□□ 0.73
SMARCA4-207ENST00000541122 RB1CC1Q8TDY2 1594 aa19.58■□□□□ 0.72
SMARCA4-207ENST00000541122 CEP164Q9UPV0 1460 aa19.57■□□□□ 0.72
SMARCA4-207ENST00000541122 RTN4Q9NQC3 1192 aaKnown RBP19.56■□□□□ 0.72
SMARCA4-207ENST00000541122 L1TD1Q5T7N2 865 aaKnown RBP19.53■□□□□ 0.72
SMARCA4-207ENST00000541122 TSPY4P0CV99 314 aa19.51■□□□□ 0.71
SMARCA4-207ENST00000541122 TSPY10P0CW01 314 aa19.51■□□□□ 0.71
SMARCA4-207ENST00000541122 PTMAP06454 111 aaKnown RBP19.5■□□□□ 0.71
SMARCA4-207ENST00000541122 KDM2AQ9Y2K7 1162 aa19.5■□□□□ 0.71
SMARCA4-207ENST00000541122 TSHZ2Q9NRE2 1034 aa19.49■□□□□ 0.71
SMARCA4-207ENST00000541122 NACADO15069 1562 aa19.49■□□□□ 0.71
SMARCA4-207ENST00000541122 B4GALNT3Q6L9W6 998 aa19.48■□□□□ 0.71
SMARCA4-207ENST00000541122 CDCA8Q53HL2 280 aa19.45■□□□□ 0.7
SMARCA4-207ENST00000541122 CHGAP10645 457 aaKnown RBP19.44■□□□□ 0.7
SMARCA4-207ENST00000541122 DNTTIP2Q5QJE6 756 aaKnown RBP19.43■□□□□ 0.7
SMARCA4-207ENST00000541122 RRP7BPQ9NSQ0 103 aa19.43■□□□□ 0.7
SMARCA4-207ENST00000541122 WRNQ14191 1432 aaPredicted RBP eCLIP19.42■□□□□ 0.75e-6■■□□□ 12.5
SMARCA4-207ENST00000541122 CASC1Q6TDU7 716 aa19.4■□□□□ 0.7
SMARCA4-207ENST00000541122 CCNB3Q8WWL7 1395 aa19.38■□□□□ 0.69
SMARCA4-207ENST00000541122 CFAP53Q96M91 514 aa19.38■□□□□ 0.69
SMARCA4-207ENST00000541122 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.37■□□□□ 0.692e-8■■■□□ 17.8
SMARCA4-207ENST00000541122 KNSTRNQ9Y448 316 aa19.37■□□□□ 0.69
SMARCA4-207ENST00000541122 MS4A1P11836 297 aa19.36■□□□□ 0.69
SMARCA4-207ENST00000541122 RGS3P49796 1198 aa19.35■□□□□ 0.69
SMARCA4-207ENST00000541122 SIN3AQ96ST3 1273 aa19.35■□□□□ 0.69
SMARCA4-207ENST00000541122 CHMP4BQ9H444 224 aaKnown RBP19.35■□□□□ 0.69
SMARCA4-207ENST00000541122 FTSJ3Q8IY81 847 aaKnown RBP19.34■□□□□ 0.69
SMARCA4-207ENST00000541122 CARD11Q9BXL7 1154 aa19.33■□□□□ 0.69
SMARCA4-207ENST00000541122 TCERG1O14776 1098 aaKnown RBP19.32■□□□□ 0.68
SMARCA4-207ENST00000541122 STAG3Q9UJ98 1225 aa19.31■□□□□ 0.68
SMARCA4-207ENST00000541122 KIF27Q86VH2 1401 aa19.3■□□□□ 0.68
SMARCA4-207ENST00000541122 HSP90AB1P08238 724 aaKnown RBP19.3■□□□□ 0.68
SMARCA4-207ENST00000541122 PTMSP20962 102 aa19.29■□□□□ 0.68
SMARCA4-207ENST00000541122 MSNP26038 577 aaKnown RBP19.29■□□□□ 0.68
SMARCA4-207ENST00000541122 HSCBQ8IWL3 235 aa19.28■□□□□ 0.68
SMARCA4-207ENST00000541122 CDK11BP21127 795 aaKnown RBP19.28■□□□□ 0.68
SMARCA4-207ENST00000541122 IPO9Q96P70 1041 aaKnown RBP19.28■□□□□ 0.68
SMARCA4-207ENST00000541122 ZRSR1Q15695 479 aaKnown RBP19.27■□□□□ 0.68
SMARCA4-207ENST00000541122 SETD5Q9C0A6 1442 aa19.25■□□□□ 0.67
SMARCA4-207ENST00000541122 VPS8Q8N3P4 1428 aa19.25■□□□□ 0.67
SMARCA4-207ENST00000541122 CHAF1AQ13111 956 aaPredicted RBP19.24■□□□□ 0.67
SMARCA4-207ENST00000541122 FHAD1B1AJZ9 1412 aa19.24■□□□□ 0.67
SMARCA4-207ENST00000541122 USP35Q9P2H5 1018 aa19.23■□□□□ 0.67
SMARCA4-207ENST00000541122 ESF1Q9H501 851 aaKnown RBP19.23■□□□□ 0.67
SMARCA4-207ENST00000541122 CFAP44Q96MT7 982 aa19.22■□□□□ 0.67
SMARCA4-207ENST00000541122 PNNQ9H307 717 aaKnown RBP19.22■□□□□ 0.67
SMARCA4-207ENST00000541122 GOLGA6L6A8MZA4 724 aa19.21■□□□□ 0.67
SMARCA4-207ENST00000541122 NRDCO43847 1150 aa19.18■□□□□ 0.66
SMARCA4-207ENST00000541122 SENP3-EIF4A1A0A087X0R7 540 aa19.16■□□□□ 0.66
SMARCA4-207ENST00000541122 FRAT1Q92837 279 aaPredicted RBP19.16■□□□□ 0.66
SMARCA4-207ENST00000541122 NUDCQ9Y266 331 aa19.16■□□□□ 0.66
SMARCA4-207ENST00000541122 MAPK8IP3Q9UPT6 1336 aa19.16■□□□□ 0.66
SMARCA4-207ENST00000541122 GBP4Q96PP9 640 aa19.15■□□□□ 0.66
SMARCA4-207ENST00000541122 HSPA5P11021 654 aaKnown RBP19.14■□□□□ 0.65
SMARCA4-207ENST00000541122 FANCIQ9NVI1 1328 aa19.14■□□□□ 0.65
SMARCA4-207ENST00000541122 RGL3Q3MIN7 710 aa19.13■□□□□ 0.65
SMARCA4-207ENST00000541122 RCAN3Q9UKA8 241 aa19.12■□□□□ 0.65
SMARCA4-207ENST00000541122 RSPH6AQ9H0K4 717 aa19.12■□□□□ 0.65
SMARCA4-207ENST00000541122 CFDP1Q9UEE9 299 aaPredicted RBP19.11■□□□□ 0.65
SMARCA4-207ENST00000541122 PLEKHD1A6NEE1 506 aa19.1■□□□□ 0.65
SMARCA4-207ENST00000541122 TMF1P82094 1093 aa19.1■□□□□ 0.65
SMARCA4-207ENST00000541122 PLCB2Q00722 1185 aa19.1■□□□□ 0.65
SMARCA4-207ENST00000541122 ARID4BQ4LE39 1312 aaPredicted RBP19.09■□□□□ 0.65
SMARCA4-207ENST00000541122 GOLGA6L3A6NEY3 463 aa19.09■□□□□ 0.65
SMARCA4-207ENST00000541122 KTN1Q86UP2 1357 aaKnown RBP19.08■□□□□ 0.64
SMARCA4-207ENST00000541122 RALBP1Q15311 655 aa19.07■□□□□ 0.64
SMARCA4-207ENST00000541122 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.07■□□□□ 0.64
SMARCA4-207ENST00000541122 CC2D1BQ5T0F9 858 aaKnown RBP19.07■□□□□ 0.64
SMARCA4-207ENST00000541122 BAZ1AQ9NRL2 1556 aaPredicted RBP19.06■□□□□ 0.64
SMARCA4-207ENST00000541122 NPM1P06748 294 aaKnown RBP eCLIP19.06■□□□□ 0.64
SMARCA4-207ENST00000541122 NEUROD2Q15784 382 aa19.06■□□□□ 0.64
SMARCA4-207ENST00000541122 ARHGAP35Q9NRY4 1499 aa19.04■□□□□ 0.64
SMARCA4-207ENST00000541122 SOGA1O94964 1423 aa19.04■□□□□ 0.64
SMARCA4-207ENST00000541122 RAB3GAP2Q9H2M9 1393 aa19.04■□□□□ 0.64
SMARCA4-207ENST00000541122 PDE3BQ13370 1112 aa19.03■□□□□ 0.64
SMARCA4-207ENST00000541122 MCCP23508 829 aa19.03■□□□□ 0.64
SMARCA4-207ENST00000541122 KIAA2012Q0VF49 1180 aa19.03■□□□□ 0.64
SMARCA4-207ENST00000541122 PPP1R15AO75807 674 aaPredicted RBP19.02■□□□□ 0.64
SMARCA4-207ENST00000541122 BAZ1BQ9UIG0 1483 aaKnown RBP19.02■□□□□ 0.63
SMARCA4-207ENST00000541122 RWDD1Q9H446 243 aaPredicted RBP19■□□□□ 0.63
SMARCA4-207ENST00000541122 GOLGA6L4A6NEF3 574 aa18.99■□□□□ 0.63
SMARCA4-207ENST00000541122 CHMP7Q8WUX9 453 aaPredicted RBP18.98■□□□□ 0.63
SMARCA4-207ENST00000541122 SYAP1Q96A49 352 aaPredicted RBP18.97■□□□□ 0.63
SMARCA4-207ENST00000541122 PMFBP1Q8TBY8 1022 aa18.97■□□□□ 0.63
SMARCA4-207ENST00000541122 SLKQ9H2G2 1235 aaPredicted RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms