RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 RANGAP1P46060 587 aaPredicted RBP28.07■■■□□ 2.08
CLIP1-215ENST00000541108 FBLN2P98095 1184 aa28.03■■■□□ 2.08
CLIP1-215ENST00000541108 ARHGAP35Q9NRY4 1499 aa28.02■■■□□ 2.08
CLIP1-215ENST00000541108 KIAA0586Q9BVV6 1533 aa28.01■■■□□ 2.07
CLIP1-215ENST00000541108 NUP160Q12769 1436 aa27.99■■■□□ 2.07
CLIP1-215ENST00000541108 EFCAB5A4FU69 1503 aa27.98■■■□□ 2.07
CLIP1-215ENST00000541108 IQGAP2Q13576 1575 aa27.98■■■□□ 2.07
CLIP1-215ENST00000541108 VPS8Q8N3P4 1428 aa27.95■■■□□ 2.07
CLIP1-215ENST00000541108 CEP170Q5SW79 1584 aa27.94■■■□□ 2.06
CLIP1-215ENST00000541108 ARAP1Q96P48 1450 aa27.94■■■□□ 2.06
CLIP1-215ENST00000541108 CHD1O14646 1710 aa27.9■■■□□ 2.06
CLIP1-215ENST00000541108 SAMD9Q5K651 1589 aa27.88■■■□□ 2.05
CLIP1-215ENST00000541108 UGGT2Q9NYU1 1516 aa27.87■■■□□ 2.05
CLIP1-215ENST00000541108 P3H3Q8IVL6 736 aa27.78■■■□□ 2.04
CLIP1-215ENST00000541108 JPH4Q96JJ6 628 aa27.77■■■□□ 2.04
CLIP1-215ENST00000541108 FHOD3Q2V2M9 1422 aa27.77■■■□□ 2.04
CLIP1-215ENST00000541108 FMN1Q68DA7 1419 aa27.75■■■□□ 2.03
CLIP1-215ENST00000541108 DISP1Q96F81 1524 aa27.72■■■□□ 2.03
CLIP1-215ENST00000541108 KIAA0556O60303 1618 aa27.69■■■□□ 2.02
CLIP1-215ENST00000541108 APLP2Q06481 763 aa27.68■■■□□ 2.02
CLIP1-215ENST00000541108 CARMIL2Q6F5E8 1435 aa27.68■■■□□ 2.02
CLIP1-215ENST00000541108 CLASP1Q7Z460 1538 aa27.63■■■□□ 2.01
CLIP1-215ENST00000541108 CASKIN1Q8WXD9 1431 aa27.63■■■□□ 2.01
CLIP1-215ENST00000541108 SHROOM2Q13796 1616 aa27.62■■■□□ 2.01
CLIP1-215ENST00000541108 FYCO1Q9BQS8 1478 aa27.61■■■□□ 2.01
CLIP1-215ENST00000541108 MAP3K1Q13233 1512 aa27.58■■■□□ 2.01
CLIP1-215ENST00000541108 PCF11O94913 1555 aaKnown RBP27.58■■■□□ 2.01
CLIP1-215ENST00000541108 PRG4Q92954 1404 aaPredicted RBP27.57■■■□□ 2
CLIP1-215ENST00000541108 OSCARQ8IYS5 282 aa27.55■■■□□ 2
CLIP1-215ENST00000541108 PPARGC1BQ86YN6 1023 aaKnown RBP27.52■■■□□ 2
CLIP1-215ENST00000541108 TRIM26Q12899 539 aaPredicted RBP27.48■■□□□ 1.99
CLIP1-215ENST00000541108 TIAM1Q13009 1591 aa27.47■■□□□ 1.99
CLIP1-215ENST00000541108 ATP1B4Q9UN42 357 aaPredicted RBP27.46■■□□□ 1.99
CLIP1-215ENST00000541108 HECW1Q76N89 1606 aa27.43■■□□□ 1.98
CLIP1-215ENST00000541108 CFAP43Q8NDM7 1665 aa27.42■■□□□ 1.98
CLIP1-215ENST00000541108 KANK4Q5T7N3 995 aaPredicted RBP27.4■■□□□ 1.98
CLIP1-215ENST00000541108 PTPRGP23470 1445 aa27.4■■□□□ 1.98
CLIP1-215ENST00000541108 CCDC18Q5T9S5 1454 aa27.4■■□□□ 1.98
CLIP1-215ENST00000541108 RAPGEF6Q8TEU7 1601 aa27.4■■□□□ 1.98
CLIP1-215ENST00000541108 LRRC9Q6ZRR7 1453 aa27.37■■□□□ 1.97
CLIP1-215ENST00000541108 TTBK1Q5TCY1 1321 aaPredicted RBP27.37■■□□□ 1.97
CLIP1-215ENST00000541108 LRRIQ1Q96JM4 1722 aa27.35■■□□□ 1.97
CLIP1-215ENST00000541108 ERCC6L2Q5T890 1561 aa27.35■■□□□ 1.97
CLIP1-215ENST00000541108 EPRSP07814 1512 aaKnown RBP27.35■■□□□ 1.97
CLIP1-215ENST00000541108 PLB1Q6P1J6 1458 aa27.34■■□□□ 1.97
CLIP1-215ENST00000541108 ABCA8O94911 1581 aa27.33■■□□□ 1.97
CLIP1-215ENST00000541108 NUP153P49790 1475 aaKnown RBP27.32■■□□□ 1.96
CLIP1-215ENST00000541108 PCGF6Q9BYE7 350 aa27.3■■□□□ 1.96
CLIP1-215ENST00000541108 UACAQ9BZF9 1416 aa27.24■■□□□ 1.95
CLIP1-215ENST00000541108 MTUS2Q5JR59 1369 aa27.24■■□□□ 1.95
CLIP1-215ENST00000541108 CDK13Q14004 1512 aaKnown RBP27.21■■□□□ 1.95
CLIP1-215ENST00000541108 CDK11AQ9UQ88 783 aaPredicted RBP27.21■■□□□ 1.95
CLIP1-215ENST00000541108 EHBP1L1Q8N3D4 1523 aa27.19■■□□□ 1.94
CLIP1-215ENST00000541108 ABCC2Q92887 1545 aa27.16■■□□□ 1.94
CLIP1-215ENST00000541108 UHRF1BP1LA0JNW5 1464 aa27.15■■□□□ 1.94
CLIP1-215ENST00000541108 MAGI3Q5TCQ9 1506 aa27.14■■□□□ 1.94
CLIP1-215ENST00000541108 ATP10BO94823 1461 aa27.14■■□□□ 1.94
CLIP1-215ENST00000541108 ARID3CA6NKF2 412 aa27.14■■□□□ 1.93
CLIP1-215ENST00000541108 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.14■■□□□ 1.93
CLIP1-215ENST00000541108 HNRNPUL2Q1KMD3 747 aaKnown RBP27.14■■□□□ 1.93
CLIP1-215ENST00000541108 SUPT6HQ7KZ85 1726 aaKnown RBP27.1■■□□□ 1.93
CLIP1-215ENST00000541108 RRBP1Q9P2E9 1410 aaKnown RBP27.09■■□□□ 1.93
CLIP1-215ENST00000541108 NCOA2Q15596 1464 aa27.06■■□□□ 1.92
CLIP1-215ENST00000541108 PHLDB1Q86UU1 1377 aa27.06■■□□□ 1.92
CLIP1-215ENST00000541108 TROQ12816 1431 aaPredicted RBP27.06■■□□□ 1.92
CLIP1-215ENST00000541108 PLEKHD1A6NEE1 506 aa27.05■■□□□ 1.92
CLIP1-215ENST00000541108 ARHGEF11O15085 1522 aa27.05■■□□□ 1.92
CLIP1-215ENST00000541108 KDM5BQ9UGL1 1544 aa27.02■■□□□ 1.92
CLIP1-215ENST00000541108 CCNB3Q8WWL7 1395 aa27.01■■□□□ 1.91
CLIP1-215ENST00000541108 ADCY10Q96PN6 1610 aa26.97■■□□□ 1.91
CLIP1-215ENST00000541108 MYOM3Q5VTT5 1437 aa26.96■■□□□ 1.91
CLIP1-215ENST00000541108 ZCCHC11Q5TAX3 1644 aaKnown RBP26.93■■□□□ 1.9
CLIP1-215ENST00000541108 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.93■■□□□ 1.9
CLIP1-215ENST00000541108 FGD6Q6ZV73 1430 aa26.92■■□□□ 1.9
CLIP1-215ENST00000541108 RIMBP3CA6NJZ7 1639 aa26.89■■□□□ 1.89
CLIP1-215ENST00000541108 RIMBP3BA6NNM3 1639 aa26.89■■□□□ 1.89
CLIP1-215ENST00000541108 KIF14Q15058 1648 aa26.89■■□□□ 1.89
CLIP1-215ENST00000541108 RIMBP3Q9UFD9 1639 aa26.89■■□□□ 1.89
CLIP1-215ENST00000541108 MIA2Q96PC5 1412 aa26.88■■□□□ 1.89
CLIP1-215ENST00000541108 ABCC10Q5T3U5 1492 aa26.83■■□□□ 1.88
CLIP1-215ENST00000541108 NPM1P06748 294 aaKnown RBP eCLIP26.82■■□□□ 1.88
CLIP1-215ENST00000541108 FAM50AQ14320 339 aaKnown RBP26.81■■□□□ 1.88
CLIP1-215ENST00000541108 GPATCH8Q9UKJ3 1502 aaKnown RBP26.79■■□□□ 1.88
CLIP1-215ENST00000541108 ITSN2Q9NZM3 1697 aa26.79■■□□□ 1.88
CLIP1-215ENST00000541108 TCOF1Q13428 1488 aaKnown RBP26.79■■□□□ 1.88
CLIP1-215ENST00000541108 PTPN23Q9H3S7 1636 aa26.79■■□□□ 1.88
CLIP1-215ENST00000541108 CYB5RLQ6IPT4 315 aa26.77■■□□□ 1.88
CLIP1-215ENST00000541108 WDR7Q9Y4E6 1490 aa26.75■■□□□ 1.87
CLIP1-215ENST00000541108 CFDP1Q9UEE9 299 aaPredicted RBP26.73■■□□□ 1.87
CLIP1-215ENST00000541108 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.72■■□□□ 1.87
CLIP1-215ENST00000541108 CDC42BPAQ5VT25 1732 aa26.71■■□□□ 1.87
CLIP1-215ENST00000541108 ASXL2Q76L83 1435 aa26.71■■□□□ 1.87
CLIP1-215ENST00000541108 KCNH8Q96L42 1107 aa26.7■■□□□ 1.87
CLIP1-215ENST00000541108 ITGAEP38570 1179 aa26.66■■□□□ 1.86
CLIP1-215ENST00000541108 TTC37Q6PGP7 1564 aa26.66■■□□□ 1.86
CLIP1-215ENST00000541108 PREX2Q70Z35 1606 aa26.64■■□□□ 1.85
CLIP1-215ENST00000541108 MAPKBP1O60336 1514 aa26.61■■□□□ 1.85
CLIP1-215ENST00000541108 MYO5CQ9NQX4 1742 aa26.61■■□□□ 1.85
CLIP1-215ENST00000541108 CDC42BPBQ9Y5S2 1711 aa26.61■■□□□ 1.85
CLIP1-215ENST00000541108 PLCH2O75038 1416 aa26.6■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms