RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 CYB5RLQ6IPT4 315 aa22.26■■□□□ 1.15
LTBR-208ENST00000541005 RAPGEF2Q9Y4G8 1499 aa22.24■■□□□ 1.15
LTBR-208ENST00000541005 PRG4Q92954 1404 aaPredicted RBP22.2■■□□□ 1.14
LTBR-208ENST00000541005 IQGAP2Q13576 1575 aa22.19■■□□□ 1.14
LTBR-208ENST00000541005 CTTNBP2Q8WZ74 1663 aa22.18■■□□□ 1.14
LTBR-208ENST00000541005 PRXQ9BXM0 1461 aa22.18■■□□□ 1.14
LTBR-208ENST00000541005 JPH4Q96JJ6 628 aa22.18■■□□□ 1.14
LTBR-208ENST00000541005 EEA1Q15075 1411 aa22.15■■□□□ 1.14
LTBR-208ENST00000541005 UGGT2Q9NYU1 1516 aa22.07■■□□□ 1.12
LTBR-208ENST00000541005 CHIC1Q5VXU3 224 aa22.07■■□□□ 1.12
LTBR-208ENST00000541005 CSRNP3Q8WYN3 585 aa22.02■■□□□ 1.12
LTBR-208ENST00000541005 DISP1Q96F81 1524 aa22.01■■□□□ 1.11
LTBR-208ENST00000541005 CARMIL2Q6F5E8 1435 aa22■■□□□ 1.11
LTBR-208ENST00000541005 KIAA0556O60303 1618 aa21.99■■□□□ 1.11
LTBR-208ENST00000541005 KIF21BO75037 1637 aa21.99■■□□□ 1.11
LTBR-208ENST00000541005 ADCY10Q96PN6 1610 aa21.98■■□□□ 1.11
LTBR-208ENST00000541005 TNIKQ9UKE5 1360 aa21.94■■□□□ 1.1
LTBR-208ENST00000541005 GOLGA3Q08378 1498 aa21.9■■□□□ 1.1
LTBR-208ENST00000541005 PTPRGP23470 1445 aa21.9■■□□□ 1.1
LTBR-208ENST00000541005 MAPKBP1O60336 1514 aa21.86■■□□□ 1.09
LTBR-208ENST00000541005 UHRF1BP1LA0JNW5 1464 aa21.85■■□□□ 1.09
LTBR-208ENST00000541005 SAMD9Q5K651 1589 aa21.85■■□□□ 1.09
LTBR-208ENST00000541005 KIF13AQ9H1H9 1805 aa21.85■■□□□ 1.09
LTBR-208ENST00000541005 FAM9AQ8IZU1 332 aaPredicted RBP21.83■■□□□ 1.09
LTBR-208ENST00000541005 ABCC2Q92887 1545 aa21.82■■□□□ 1.08
LTBR-208ENST00000541005 UACAQ9BZF9 1416 aa21.8■■□□□ 1.08
LTBR-208ENST00000541005 TRHP20396 242 aaPredicted RBP21.79■■□□□ 1.08
LTBR-208ENST00000541005 ABCA8O94911 1581 aa21.75■■□□□ 1.07
LTBR-208ENST00000541005 KDM5BQ9UGL1 1544 aa21.74■■□□□ 1.07
LTBR-208ENST00000541005 DIP2BQ9P265 1576 aa21.74■■□□□ 1.07
LTBR-208ENST00000541005 ZCCHC11Q5TAX3 1644 aaKnown RBP21.73■■□□□ 1.07
LTBR-208ENST00000541005 EFCAB5A4FU69 1503 aa21.72■■□□□ 1.07
LTBR-208ENST00000541005 NPM1P06748 294 aaKnown RBP eCLIP21.72■■□□□ 1.07
LTBR-208ENST00000541005 ABCC10Q5T3U5 1492 aa21.71■■□□□ 1.07
LTBR-208ENST00000541005 TTBK1Q5TCY1 1321 aaPredicted RBP21.7■■□□□ 1.06
LTBR-208ENST00000541005 PLB1Q6P1J6 1458 aa21.7■■□□□ 1.06
LTBR-208ENST00000541005 ASXL2Q76L83 1435 aa21.63■■□□□ 1.05
LTBR-208ENST00000541005 RAPGEF6Q8TEU7 1601 aa21.62■■□□□ 1.05
LTBR-208ENST00000541005 GLI2P10070 1586 aa21.61■■□□□ 1.05
LTBR-208ENST00000541005 FHOD3Q2V2M9 1422 aa21.58■■□□□ 1.05
LTBR-208ENST00000541005 UBTFP17480 764 aaKnown RBP21.57■■□□□ 1.04
LTBR-208ENST00000541005 P3H3Q8IVL6 736 aa21.56■■□□□ 1.04
LTBR-208ENST00000541005 TSPOAP1O95153 1857 aa21.56■■□□□ 1.04
LTBR-208ENST00000541005 WDR7Q9Y4E6 1490 aa21.54■■□□□ 1.04
LTBR-208ENST00000541005 FAM69CQ0P6D2 419 aa21.54■■□□□ 1.04
LTBR-208ENST00000541005 ARHGAP35Q9NRY4 1499 aa21.53■■□□□ 1.04
LTBR-208ENST00000541005 MAP3K4Q9Y6R4 1608 aa21.53■■□□□ 1.04
LTBR-208ENST00000541005 EPRSP07814 1512 aaKnown RBP21.53■■□□□ 1.04
LTBR-208ENST00000541005 PPRC1Q5VV67 1664 aaKnown RBP21.52■■□□□ 1.04
LTBR-208ENST00000541005 ATP10BO94823 1461 aa21.5■■□□□ 1.03
LTBR-208ENST00000541005 NUP153P49790 1475 aaKnown RBP21.5■■□□□ 1.03
LTBR-208ENST00000541005 RANGAP1P46060 587 aaPredicted RBP21.49■■□□□ 1.03
LTBR-208ENST00000541005 EHMT2Q96KQ7 1210 aa21.49■■□□□ 1.03
LTBR-208ENST00000541005 CFAP43Q8NDM7 1665 aa21.47■■□□□ 1.03
LTBR-208ENST00000541005 FMN1Q68DA7 1419 aa21.45■■□□□ 1.02
LTBR-208ENST00000541005 HECW1Q76N89 1606 aa21.41■■□□□ 1.02
LTBR-208ENST00000541005 ABCA9Q8IUA7 1624 aa21.38■■□□□ 1.01
LTBR-208ENST00000541005 KDM6BO15054 1643 aa21.37■■□□□ 1.01
LTBR-208ENST00000541005 LRRIQ1Q96JM4 1722 aa21.37■■□□□ 1.01
LTBR-208ENST00000541005 TEX14Q8IWB6 1497 aa21.35■■□□□ 1.01
LTBR-208ENST00000541005 CLIP1P30622 1438 aa21.34■■□□□ 1.01
LTBR-208ENST00000541005 MAGI3Q5TCQ9 1506 aa21.34■■□□□ 1.01
LTBR-208ENST00000541005 ARID3CA6NKF2 412 aa21.33■■□□□ 1.01
LTBR-208ENST00000541005 CDK13Q14004 1512 aaKnown RBP21.33■■□□□ 1
LTBR-208ENST00000541005 PCF11O94913 1555 aaKnown RBP21.32■■□□□ 1
LTBR-208ENST00000541005 CD109Q6YHK3 1445 aa21.29■■□□□ 1
LTBR-208ENST00000541005 CASKIN1Q8WXD9 1431 aa21.28■■□□□ 1
LTBR-208ENST00000541005 KCNH8Q96L42 1107 aa21.27■■□□□ 1
LTBR-208ENST00000541005 FYCO1Q9BQS8 1478 aa21.26■□□□□ 0.99
LTBR-208ENST00000541005 CEP162Q5TB80 1403 aa21.24■□□□□ 0.99
LTBR-208ENST00000541005 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.24■□□□□ 0.99
LTBR-208ENST00000541005 HNRNPUL2Q1KMD3 747 aaKnown RBP21.24■□□□□ 0.99
LTBR-208ENST00000541005 CCDC18Q5T9S5 1454 aa21.23■□□□□ 0.99
LTBR-208ENST00000541005 PLEKHD1A6NEE1 506 aa21.22■□□□□ 0.99
LTBR-208ENST00000541005 TTC37Q6PGP7 1564 aa21.22■□□□□ 0.99
LTBR-208ENST00000541005 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.21■□□□□ 0.99
LTBR-208ENST00000541005 COL17A1Q9UMD9 1497 aaPredicted RBP21.2■□□□□ 0.98
LTBR-208ENST00000541005 CFAP74Q9C0B2 1584 aa21.17■□□□□ 0.98
LTBR-208ENST00000541005 KIF14Q15058 1648 aa21.17■□□□□ 0.98
LTBR-208ENST00000541005 MYO5CQ9NQX4 1742 aa21.16■□□□□ 0.98
LTBR-208ENST00000541005 ARAP3Q8WWN8 1544 aa21.16■□□□□ 0.98
LTBR-208ENST00000541005 NEO1Q92859 1461 aa21.15■□□□□ 0.98
LTBR-208ENST00000541005 TROQ12816 1431 aaPredicted RBP21.15■□□□□ 0.98
LTBR-208ENST00000541005 PHLDB1Q86UU1 1377 aa21.14■□□□□ 0.98
LTBR-208ENST00000541005 ATP1B4Q9UN42 357 aaPredicted RBP21.13■□□□□ 0.97
LTBR-208ENST00000541005 CDK11AQ9UQ88 783 aaPredicted RBP21.13■□□□□ 0.97
LTBR-208ENST00000541005 LOC105371045A0A1W2PR82 267 aa21.1■□□□□ 0.97
LTBR-208ENST00000541005 FRMPD1Q5SYB0 1578 aa21.06■□□□□ 0.96
LTBR-208ENST00000541005 RICTORQ6R327 1708 aa21.06■□□□□ 0.96
LTBR-208ENST00000541005 FANCAO15360 1455 aa21.06■□□□□ 0.96
LTBR-208ENST00000541005 PLCH2O75038 1416 aa21.05■□□□□ 0.96
LTBR-208ENST00000541005 PREX2Q70Z35 1606 aa21.04■□□□□ 0.96
LTBR-208ENST00000541005 CDC42BPBQ9Y5S2 1711 aa21.04■□□□□ 0.96
LTBR-208ENST00000541005 CDC42BPAQ5VT25 1732 aa21.04■□□□□ 0.96
LTBR-208ENST00000541005 AKNAQ7Z591 1439 aa21.01■□□□□ 0.95
LTBR-208ENST00000541005 VPS8Q8N3P4 1428 aa21.01■□□□□ 0.95
LTBR-208ENST00000541005 EHBP1L1Q8N3D4 1523 aa20.98■□□□□ 0.95
LTBR-208ENST00000541005 ZMYM4Q5VZL5 1548 aa20.97■□□□□ 0.95
LTBR-208ENST00000541005 DENND4BO75064 1496 aaPredicted RBP20.95■□□□□ 0.94
LTBR-208ENST00000541005 ARHGAP5Q13017 1502 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms