RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 DISP3Q9P2K9 1392 aa15.16■□□□□ 0.02
CHD4-208ENST00000540960 GRIN2AQ12879 1464 aa15.14■□□□□ 0.01
CHD4-208ENST00000540960 NUP160Q12769 1436 aa15.12■□□□□ 0.01
CHD4-208ENST00000540960 NPM1P06748 294 aaKnown RBP eCLIP15.12■□□□□ 0.01
CHD4-208ENST00000540960 PRG4Q92954 1404 aaPredicted RBP15.09■□□□□ 0.01
CHD4-208ENST00000540960 ADCY10Q96PN6 1610 aa15.09■□□□□ 0.01
CHD4-208ENST00000540960 COL17A1Q9UMD9 1497 aaPredicted RBP15.08■□□□□ 0.01
CHD4-208ENST00000540960 CUX1P39880 1505 aa15.07■□□□□ 0
CHD4-208ENST00000540960 PPRC1Q5VV67 1664 aaKnown RBP15.06■□□□□ 0
CHD4-208ENST00000540960 ABCA5Q8WWZ7 1642 aa15.04■□□□□ -0
CHD4-208ENST00000540960 JPH4Q96JJ6 628 aa15.01□□□□□ -0.01
CHD4-208ENST00000540960 ADAMTS12P58397 1594 aa14.99□□□□□ -0.01
CHD4-208ENST00000540960 ABCA10Q8WWZ4 1543 aa14.95□□□□□ -0.02
CHD4-208ENST00000540960 TOP2BQ02880 1626 aa14.95□□□□□ -0.02
CHD4-208ENST00000540960 SPATA31D1Q6ZQQ2 1576 aa14.9□□□□□ -0.02
CHD4-208ENST00000540960 CERKQ8TCT0 537 aa14.89□□□□□ -0.03
CHD4-208ENST00000540960 FHAD1B1AJZ9 1412 aa14.88□□□□□ -0.03
CHD4-208ENST00000540960 GLI2P10070 1586 aa14.86□□□□□ -0.03
CHD4-208ENST00000540960 CHIC1Q5VXU3 224 aa14.83□□□□□ -0.04
CHD4-208ENST00000540960 ASXL2Q76L83 1435 aa14.83□□□□□ -0.04
CHD4-208ENST00000540960 RUSC2Q8N2Y8 1516 aa14.81□□□□□ -0.04
CHD4-208ENST00000540960 KIF21BO75037 1637 aa14.81□□□□□ -0.04
CHD4-208ENST00000540960 PCF11O94913 1555 aaKnown RBP14.79□□□□□ -0.04
CHD4-208ENST00000540960 PTPRMP28827 1452 aa14.79□□□□□ -0.04
CHD4-208ENST00000540960 MAP3K4Q9Y6R4 1608 aa14.79□□□□□ -0.04
CHD4-208ENST00000540960 TTBK1Q5TCY1 1321 aaPredicted RBP14.77□□□□□ -0.04
CHD4-208ENST00000540960 PLB1Q6P1J6 1458 aa14.76□□□□□ -0.05
CHD4-208ENST00000540960 HSPA2P54652 639 aa14.76□□□□□ -0.05
CHD4-208ENST00000540960 CUL7Q14999 1698 aa14.75□□□□□ -0.05
CHD4-208ENST00000540960 ABCC2Q92887 1545 aa14.74□□□□□ -0.05
CHD4-208ENST00000540960 EPRSP07814 1512 aaKnown RBP14.73□□□□□ -0.05
CHD4-208ENST00000540960 TEX14Q8IWB6 1497 aa14.73□□□□□ -0.05
CHD4-208ENST00000540960 ADAMTSL3P82987 1691 aa14.73□□□□□ -0.05
CHD4-208ENST00000540960 ERICH3Q5RHP9 1530 aa14.71□□□□□ -0.05
CHD4-208ENST00000540960 PTPRGP23470 1445 aa14.69□□□□□ -0.06
CHD4-208ENST00000540960 WRNQ14191 1432 aaPredicted RBP eCLIP14.66□□□□□ -0.06
CHD4-208ENST00000540960 MADDQ8WXG6 1647 aa14.61□□□□□ -0.07
CHD4-208ENST00000540960 KIAA0586Q9BVV6 1533 aa14.61□□□□□ -0.07
CHD4-208ENST00000540960 UHRF1BP1LA0JNW5 1464 aa14.57□□□□□ -0.08
CHD4-208ENST00000540960 PLPPR3Q6T4P5 718 aa14.57□□□□□ -0.08
CHD4-208ENST00000540960 BCORL1Q5H9F3 1711 aa14.57□□□□□ -0.08
CHD4-208ENST00000540960 ZCCHC11Q5TAX3 1644 aaKnown RBP14.55□□□□□ -0.08
CHD4-208ENST00000540960 TNIKQ9UKE5 1360 aa14.55□□□□□ -0.08
CHD4-208ENST00000540960 KDM5BQ9UGL1 1544 aa14.55□□□□□ -0.08
CHD4-208ENST00000540960 UACAQ9BZF9 1416 aa14.54□□□□□ -0.08
CHD4-208ENST00000540960 RIMS1Q86UR5 1692 aaKnown RBP14.54□□□□□ -0.08
CHD4-208ENST00000540960 MAGI3Q5TCQ9 1506 aa14.52□□□□□ -0.08
CHD4-208ENST00000540960 CD109Q6YHK3 1445 aa14.52□□□□□ -0.08
CHD4-208ENST00000540960 BIVM-ERCC5R4GMW8 1640 aa14.51□□□□□ -0.09
CHD4-208ENST00000540960 ARID4BQ4LE39 1312 aaPredicted RBP14.48□□□□□ -0.09
CHD4-208ENST00000540960 CFAP43Q8NDM7 1665 aa14.47□□□□□ -0.09
CHD4-208ENST00000540960 WDR7Q9Y4E6 1490 aa14.47□□□□□ -0.09
CHD4-208ENST00000540960 KCNH8Q96L42 1107 aa14.47□□□□□ -0.09
CHD4-208ENST00000540960 STRCQ7RTU9 1775 aa14.46□□□□□ -0.09
CHD4-208ENST00000540960 ARAP3Q8WWN8 1544 aa14.46□□□□□ -0.1
CHD4-208ENST00000540960 CARMIL2Q6F5E8 1435 aa14.45□□□□□ -0.1
CHD4-208ENST00000540960 RAPGEF3O95398 923 aa14.44□□□□□ -0.1
CHD4-208ENST00000540960 DISP1Q96F81 1524 aa14.39□□□□□ -0.11
CHD4-208ENST00000540960 YEATS2Q9ULM3 1422 aa14.38□□□□□ -0.11
CHD4-208ENST00000540960 LTBP4Q8N2S1 1624 aa14.37□□□□□ -0.11
CHD4-208ENST00000540960 IGF1RP08069 1367 aa14.36□□□□□ -0.11
CHD4-208ENST00000540960 MED1Q15648 1581 aaPredicted RBP14.34□□□□□ -0.11
CHD4-208ENST00000540960 DMRT2Q9Y5R5 561 aa14.34□□□□□ -0.11
CHD4-208ENST00000540960 SIGLEC1Q9BZZ2 1709 aa14.34□□□□□ -0.11
CHD4-208ENST00000540960 FRMPD1Q5SYB0 1578 aa14.34□□□□□ -0.11
CHD4-208ENST00000540960 IQGAP2Q13576 1575 aa14.32□□□□□ -0.12
CHD4-208ENST00000540960 SUPT5HO00267 1087 aaKnown RBP14.32□□□□□ -0.12
CHD4-208ENST00000540960 PREX1Q8TCU6 1659 aa14.3□□□□□ -0.12
CHD4-208ENST00000540960 IQSEC2Q5JU85 1478 aa14.28□□□□□ -0.12
CHD4-208ENST00000540960 UBAP1LF5GYI3 381 aa14.27□□□□□ -0.13
CHD4-208ENST00000540960 CEBPAP49715 358 aaPredicted RBP14.27□□□□□ -0.13
CHD4-208ENST00000540960 MLECQ14165 292 aa14.27□□□□□ -0.13
CHD4-208ENST00000540960 FER1L4A9Z1Z3 1794 aa14.26□□□□□ -0.13
CHD4-208ENST00000540960 PTPRTO14522 1441 aa14.25□□□□□ -0.13
CHD4-208ENST00000540960 TTC37Q6PGP7 1564 aa14.25□□□□□ -0.13
CHD4-208ENST00000540960 ARHGEF40Q8TER5 1519 aa14.25□□□□□ -0.13
CHD4-208ENST00000540960 HSPA1LP34931 641 aa14.23□□□□□ -0.13
CHD4-208ENST00000540960 PHLDB1Q86UU1 1377 aa14.22□□□□□ -0.13
CHD4-208ENST00000540960 KIAA0556O60303 1618 aa14.22□□□□□ -0.13
CHD4-208ENST00000540960 CARMIL1Q5VZK9 1371 aa14.21□□□□□ -0.14
CHD4-208ENST00000540960 POGZQ7Z3K3 1410 aa14.19□□□□□ -0.14
CHD4-208ENST00000540960 ARID3CA6NKF2 412 aa14.19□□□□□ -0.14
CHD4-208ENST00000540960 UGGT2Q9NYU1 1516 aa14.19□□□□□ -0.14
CHD4-208ENST00000540960 ABCA9Q8IUA7 1624 aa14.19□□□□□ -0.14
CHD4-208ENST00000540960 PHF23Q9BUL5 403 aaPredicted RBP14.18□□□□□ -0.14
CHD4-208ENST00000540960 FANCAO15360 1455 aa14.18□□□□□ -0.14
CHD4-208ENST00000540960 NEO1Q92859 1461 aa14.18□□□□□ -0.14
CHD4-208ENST00000540960 ABCA8O94911 1581 aa14.17□□□□□ -0.14
CHD4-208ENST00000540960 RICTORQ6R327 1708 aa14.17□□□□□ -0.14
CHD4-208ENST00000540960 UHRF1BP1Q6BDS2 1440 aa14.15□□□□□ -0.14
CHD4-208ENST00000540960 ZNF335Q9H4Z2 1342 aaPredicted RBP14.15□□□□□ -0.15
CHD4-208ENST00000540960 SETD1BQ9UPS6 1966 aaKnown RBP14.14□□□□□ -0.15
CHD4-208ENST00000540960 KIF27Q86VH2 1401 aa14.14□□□□□ -0.15
CHD4-208ENST00000540960 AKNAQ7Z591 1439 aa14.13□□□□□ -0.15
CHD4-208ENST00000540960 SCAF1Q9H7N4 1312 aaKnown RBP14.12□□□□□ -0.15
CHD4-208ENST00000540960 ARHGEF12Q9NZN5 1544 aa14.11□□□□□ -0.15
CHD4-208ENST00000540960 PIP4K2BP78356 416 aa14.11□□□□□ -0.15
CHD4-208ENST00000540960 RGS17Q9UGC6 210 aaPredicted RBP14.1□□□□□ -0.15
CHD4-208ENST00000540960 DENND4BO75064 1496 aaPredicted RBP14.09□□□□□ -0.15
CHD4-208ENST00000540960 ZFYVE16Q7Z3T8 1539 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms