RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TDRD9Q8NDG6 1382 aaKnown RBP20.91■□□□□ 0.94
RTN3-210ENST00000540798 PBRM1Q86U86 1689 aa20.91■□□□□ 0.94
RTN3-210ENST00000540798 RRBP1Q9P2E9 1410 aaKnown RBP20.91■□□□□ 0.94
RTN3-210ENST00000540798 CFAP43Q8NDM7 1665 aa20.9■□□□□ 0.94
RTN3-210ENST00000540798 FHAD1B1AJZ9 1412 aa20.89■□□□□ 0.94
RTN3-210ENST00000540798 PCF11O94913 1555 aaKnown RBP20.88■□□□□ 0.93
RTN3-210ENST00000540798 WDR62O43379 1518 aa20.87■□□□□ 0.93
RTN3-210ENST00000540798 SAMD9Q5K651 1589 aa20.86■□□□□ 0.93
RTN3-210ENST00000540798 AQRO60306 1485 aaKnown RBP eCLIP20.86■□□□□ 0.932e-7■■■■□ 19.7
RTN3-210ENST00000540798 FYCO1Q9BQS8 1478 aa20.82■□□□□ 0.92
RTN3-210ENST00000540798 LRRC9Q6ZRR7 1453 aa20.8■□□□□ 0.92
RTN3-210ENST00000540798 HNRNPUL2Q1KMD3 747 aaKnown RBP20.8■□□□□ 0.92
RTN3-210ENST00000540798 ADAMTS12P58397 1594 aa20.8■□□□□ 0.92
RTN3-210ENST00000540798 FHOD3Q2V2M9 1422 aa20.79■□□□□ 0.92
RTN3-210ENST00000540798 CASKIN1Q8WXD9 1431 aa20.79■□□□□ 0.92
RTN3-210ENST00000540798 IFT140Q96RY7 1462 aa20.77■□□□□ 0.92
RTN3-210ENST00000540798 SNAPC4Q5SXM2 1469 aa20.74■□□□□ 0.91
RTN3-210ENST00000540798 PELP1Q8IZL8 1130 aaKnown RBP20.74■□□□□ 0.91
RTN3-210ENST00000540798 CCNB3Q8WWL7 1395 aa20.73■□□□□ 0.91
RTN3-210ENST00000540798 FMN1Q68DA7 1419 aa20.73■□□□□ 0.91
RTN3-210ENST00000540798 GRIN2BQ13224 1484 aa20.73■□□□□ 0.91
RTN3-210ENST00000540798 THOC2Q8NI27 1593 aaKnown RBP20.72■□□□□ 0.91
RTN3-210ENST00000540798 LRRIQ1Q96JM4 1722 aa20.69■□□□□ 0.9
RTN3-210ENST00000540798 P3H3Q8IVL6 736 aa20.68■□□□□ 0.9
RTN3-210ENST00000540798 ZNF608Q9ULD9 1512 aaPredicted RBP20.66■□□□□ 0.9
RTN3-210ENST00000540798 IQGAP2Q13576 1575 aa20.65■□□□□ 0.9
RTN3-210ENST00000540798 EIF4G3O43432 1585 aaKnown RBP20.64■□□□□ 0.89
RTN3-210ENST00000540798 PHLDB1Q86UU1 1377 aa20.63■□□□□ 0.89
RTN3-210ENST00000540798 CLSPNQ9HAW4 1339 aa20.6■□□□□ 0.89
RTN3-210ENST00000540798 ERCC6Q03468 1493 aa20.59■□□□□ 0.89
RTN3-210ENST00000540798 DHX57Q6P158 1386 aaKnown RBP20.58■□□□□ 0.89
RTN3-210ENST00000540798 UGGT2Q9NYU1 1516 aa20.58■□□□□ 0.88
RTN3-210ENST00000540798 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.55■□□□□ 0.88
RTN3-210ENST00000540798 HECW1Q76N89 1606 aa20.51■□□□□ 0.87
RTN3-210ENST00000540798 GRIN2AQ12879 1464 aa20.5■□□□□ 0.87
RTN3-210ENST00000540798 MAGI1Q96QZ7 1491 aaPredicted RBP20.5■□□□□ 0.87
RTN3-210ENST00000540798 KIAA0586Q9BVV6 1533 aa20.5■□□□□ 0.87
RTN3-210ENST00000540798 CCDC18Q5T9S5 1454 aa20.5■□□□□ 0.87
RTN3-210ENST00000540798 EHBP1L1Q8N3D4 1523 aa20.5■□□□□ 0.87
RTN3-210ENST00000540798 SUPT6HQ7KZ85 1726 aaKnown RBP20.48■□□□□ 0.87
RTN3-210ENST00000540798 ARHGEF11O15085 1522 aa20.47■□□□□ 0.87
RTN3-210ENST00000540798 ATP1B4Q9UN42 357 aaPredicted RBP20.47■□□□□ 0.87
RTN3-210ENST00000540798 KIAA0556O60303 1618 aa20.46■□□□□ 0.87
RTN3-210ENST00000540798 FGD6Q6ZV73 1430 aa20.45■□□□□ 0.86
RTN3-210ENST00000540798 MAGI3Q5TCQ9 1506 aa20.44■□□□□ 0.86
RTN3-210ENST00000540798 DISP1Q96F81 1524 aa20.44■□□□□ 0.86
RTN3-210ENST00000540798 MTUS2Q5JR59 1369 aa20.43■□□□□ 0.86
RTN3-210ENST00000540798 RAB3GAP2Q9H2M9 1393 aa20.43■□□□□ 0.86
RTN3-210ENST00000540798 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
RTN3-210ENST00000540798 SETD5Q9C0A6 1442 aa20.42■□□□□ 0.86
RTN3-210ENST00000540798 NCOA2Q15596 1464 aa20.42■□□□□ 0.86
RTN3-210ENST00000540798 CEP170Q5SW79 1584 aa20.41■□□□□ 0.86
RTN3-210ENST00000540798 EPRSP07814 1512 aaKnown RBP20.4■□□□□ 0.86
RTN3-210ENST00000540798 MYOM3Q5VTT5 1437 aa20.38■□□□□ 0.85
RTN3-210ENST00000540798 ZNF316A6NFI3 1004 aaPredicted RBP20.38■□□□□ 0.85
RTN3-210ENST00000540798 MAPKBP1O60336 1514 aa20.37■□□□□ 0.85
RTN3-210ENST00000540798 ITGAEP38570 1179 aa20.36■□□□□ 0.85
RTN3-210ENST00000540798 FAM50AQ14320 339 aaKnown RBP20.35■□□□□ 0.85
RTN3-210ENST00000540798 NUP160Q12769 1436 aa20.34■□□□□ 0.85
RTN3-210ENST00000540798 PTPN23Q9H3S7 1636 aa20.32■□□□□ 0.84
RTN3-210ENST00000540798 RAPGEF6Q8TEU7 1601 aa20.32■□□□□ 0.84
RTN3-210ENST00000540798 CDK13Q14004 1512 aaKnown RBP20.32■□□□□ 0.84
RTN3-210ENST00000540798 DIEXFQ68CQ4 756 aaKnown RBP20.32■□□□□ 0.84
RTN3-210ENST00000540798 TCOF1Q13428 1488 aaKnown RBP20.32■□□□□ 0.84
RTN3-210ENST00000540798 NUP153P49790 1475 aaKnown RBP20.28■□□□□ 0.84
RTN3-210ENST00000540798 PTPRKQ15262 1439 aa20.28■□□□□ 0.84
RTN3-210ENST00000540798 HFM1A2PYH4 1435 aa20.26■□□□□ 0.83
RTN3-210ENST00000540798 CHMP7Q8WUX9 453 aaPredicted RBP20.25■□□□□ 0.83
RTN3-210ENST00000540798 MIA2Q96PC5 1412 aa20.23■□□□□ 0.83
RTN3-210ENST00000540798 GCC2Q8IWJ2 1684 aa20.2■□□□□ 0.82
RTN3-210ENST00000540798 NAIPQ13075 1403 aa20.18■□□□□ 0.82
RTN3-210ENST00000540798 AKNAQ7Z591 1439 aa20.17■□□□□ 0.82
RTN3-210ENST00000540798 ADCY10Q96PN6 1610 aa20.16■□□□□ 0.82
RTN3-210ENST00000540798 CARMIL2Q6F5E8 1435 aa20.16■□□□□ 0.82
RTN3-210ENST00000540798 ABCA8O94911 1581 aa20.13■□□□□ 0.81
RTN3-210ENST00000540798 UACAQ9BZF9 1416 aa20.13■□□□□ 0.81
RTN3-210ENST00000540798 PLB1Q6P1J6 1458 aa20.12■□□□□ 0.81
RTN3-210ENST00000540798 JPH4Q96JJ6 628 aa20.12■□□□□ 0.81
RTN3-210ENST00000540798 CHD1O14646 1710 aa20.11■□□□□ 0.81
RTN3-210ENST00000540798 SCAF1Q9H7N4 1312 aaKnown RBP20.09■□□□□ 0.81
RTN3-210ENST00000540798 TROQ12816 1431 aaPredicted RBP20.09■□□□□ 0.81
RTN3-210ENST00000540798 FBLN2P98095 1184 aa20.09■□□□□ 0.81
RTN3-210ENST00000540798 DNMT1P26358 1616 aaKnown RBP20.09■□□□□ 0.81
RTN3-210ENST00000540798 ITSN2Q9NZM3 1697 aa20.08■□□□□ 0.8
RTN3-210ENST00000540798 TIMELESSQ9UNS1 1208 aa20.08■□□□□ 0.8
RTN3-210ENST00000540798 SHROOM2Q13796 1616 aa20.06■□□□□ 0.8
RTN3-210ENST00000540798 CDK11AQ9UQ88 783 aaPredicted RBP20.05■□□□□ 0.8
RTN3-210ENST00000540798 KIF14Q15058 1648 aa20.04■□□□□ 0.8
RTN3-210ENST00000540798 PRG4Q92954 1404 aaPredicted RBP20.03■□□□□ 0.8
RTN3-210ENST00000540798 MYT1Q01538 1121 aa20.03■□□□□ 0.8
RTN3-210ENST00000540798 ARID3CA6NKF2 412 aa20.03■□□□□ 0.8
RTN3-210ENST00000540798 KDM6BO15054 1643 aa20.02■□□□□ 0.8
RTN3-210ENST00000540798 DAPK1P53355 1430 aa20.02■□□□□ 0.8
RTN3-210ENST00000540798 ROCK1Q13464 1354 aa20.02■□□□□ 0.79
RTN3-210ENST00000540798 SIN3AQ96ST3 1273 aa20■□□□□ 0.79
RTN3-210ENST00000540798 ABCC5O15440 1437 aa19.99■□□□□ 0.79
RTN3-210ENST00000540798 GPATCH8Q9UKJ3 1502 aaKnown RBP19.99■□□□□ 0.79
RTN3-210ENST00000540798 CROCC2H7BZ55 1655 aa19.98■□□□□ 0.79
RTN3-210ENST00000540798 DENND4BO75064 1496 aaPredicted RBP19.98■□□□□ 0.79
RTN3-210ENST00000540798 ATP10BO94823 1461 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms