RNA–Protein interactions for RNA: ENST00000540699.1

ATL3-204, Transcript of atlastin GTPase 3, humanhuman

TSL 3

Gene ATL3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-204ENST00000540699 EEA1Q15075 1411 aa17.7■□□□□ 0.42
ATL3-204ENST00000540699 CARMIL1Q5VZK9 1371 aa17.69■□□□□ 0.42
ATL3-204ENST00000540699 ERCC6L2Q5T890 1561 aa17.67■□□□□ 0.42
ATL3-204ENST00000540699 SHROOM2Q13796 1616 aa17.65■□□□□ 0.42
ATL3-204ENST00000540699 PRXQ9BXM0 1461 aa17.64■□□□□ 0.41
ATL3-204ENST00000540699 RAPGEF2Q9Y4G8 1499 aa17.63■□□□□ 0.41
ATL3-204ENST00000540699 CSRNP3Q8WYN3 585 aa17.59■□□□□ 0.41
ATL3-204ENST00000540699 KIAA0586Q9BVV6 1533 aa17.56■□□□□ 0.4
ATL3-204ENST00000540699 KIF21BO75037 1637 aa17.54■□□□□ 0.4
ATL3-204ENST00000540699 CTTNBP2Q8WZ74 1663 aa17.52■□□□□ 0.4
ATL3-204ENST00000540699 IQGAP2Q13576 1575 aa17.49■□□□□ 0.39
ATL3-204ENST00000540699 PRG4Q92954 1404 aaPredicted RBP17.47■□□□□ 0.39
ATL3-204ENST00000540699 FAM9AQ8IZU1 332 aaPredicted RBP17.47■□□□□ 0.39
ATL3-204ENST00000540699 JPH4Q96JJ6 628 aa17.45■□□□□ 0.38
ATL3-204ENST00000540699 KIF13AQ9H1H9 1805 aa17.44■□□□□ 0.38
ATL3-204ENST00000540699 UGGT2Q9NYU1 1516 aa17.42■□□□□ 0.38
ATL3-204ENST00000540699 GOLGA3Q08378 1498 aa17.39■□□□□ 0.37
ATL3-204ENST00000540699 DISP1Q96F81 1524 aa17.36■□□□□ 0.37
ATL3-204ENST00000540699 ADCY10Q96PN6 1610 aa17.35■□□□□ 0.37
ATL3-204ENST00000540699 KIAA0556O60303 1618 aa17.33■□□□□ 0.37
ATL3-204ENST00000540699 CARMIL2Q6F5E8 1435 aa17.32■□□□□ 0.36
ATL3-204ENST00000540699 MAPKBP1O60336 1514 aa17.31■□□□□ 0.36
ATL3-204ENST00000540699 SAMD9Q5K651 1589 aa17.3■□□□□ 0.36
ATL3-204ENST00000540699 ABCC10Q5T3U5 1492 aa17.28■□□□□ 0.36
ATL3-204ENST00000540699 DIP2BQ9P265 1576 aa17.28■□□□□ 0.36
ATL3-204ENST00000540699 ILDR1Q86SU0 546 aaPredicted RBP17.27■□□□□ 0.36
ATL3-204ENST00000540699 TNIKQ9UKE5 1360 aa17.27■□□□□ 0.35
ATL3-204ENST00000540699 EFCAB5A4FU69 1503 aa17.24■□□□□ 0.35
ATL3-204ENST00000540699 UBTFP17480 764 aaKnown RBP17.23■□□□□ 0.35
ATL3-204ENST00000540699 PTPRGP23470 1445 aa17.22■□□□□ 0.35
ATL3-204ENST00000540699 NPM1P06748 294 aaKnown RBP eCLIP17.22■□□□□ 0.35
ATL3-204ENST00000540699 FAM69CQ0P6D2 419 aa17.2■□□□□ 0.34
ATL3-204ENST00000540699 TSPOAP1O95153 1857 aa17.18■□□□□ 0.34
ATL3-204ENST00000540699 LOC105371045A0A1W2PR82 267 aa17.17■□□□□ 0.34
ATL3-204ENST00000540699 EHMT2Q96KQ7 1210 aa17.17■□□□□ 0.34
ATL3-204ENST00000540699 UHRF1BP1LA0JNW5 1464 aa17.17■□□□□ 0.34
ATL3-204ENST00000540699 ABCA8O94911 1581 aa17.15■□□□□ 0.34
ATL3-204ENST00000540699 ARHGAP35Q9NRY4 1499 aa17.14■□□□□ 0.33
ATL3-204ENST00000540699 ABCC2Q92887 1545 aa17.14■□□□□ 0.33
ATL3-204ENST00000540699 UACAQ9BZF9 1416 aa17.13■□□□□ 0.33
ATL3-204ENST00000540699 KDM6BO15054 1643 aa17.12■□□□□ 0.33
ATL3-204ENST00000540699 FHOD3Q2V2M9 1422 aa17.11■□□□□ 0.33
ATL3-204ENST00000540699 TTBK1Q5TCY1 1321 aaPredicted RBP17.1■□□□□ 0.33
ATL3-204ENST00000540699 PLB1Q6P1J6 1458 aa17.1■□□□□ 0.33
ATL3-204ENST00000540699 P3H3Q8IVL6 736 aa17.09■□□□□ 0.33
ATL3-204ENST00000540699 PPRC1Q5VV67 1664 aaKnown RBP17.08■□□□□ 0.32
ATL3-204ENST00000540699 KDM5BQ9UGL1 1544 aa17.07■□□□□ 0.32
ATL3-204ENST00000540699 RANGAP1P46060 587 aaPredicted RBP17.07■□□□□ 0.32
ATL3-204ENST00000540699 RAPGEF6Q8TEU7 1601 aa17.07■□□□□ 0.32
ATL3-204ENST00000540699 GLI2P10070 1586 aa17.06■□□□□ 0.32
ATL3-204ENST00000540699 ASXL2Q76L83 1435 aa17.06■□□□□ 0.32
ATL3-204ENST00000540699 CLIP1P30622 1438 aa17.05■□□□□ 0.32
ATL3-204ENST00000540699 ZCCHC11Q5TAX3 1644 aaKnown RBP17.04■□□□□ 0.32
ATL3-204ENST00000540699 CEP162Q5TB80 1403 aa17.03■□□□□ 0.32
ATL3-204ENST00000540699 FMN1Q68DA7 1419 aa17.03■□□□□ 0.32
ATL3-204ENST00000540699 KDM4FA0A1W2PPD8 638 aa17.02■□□□□ 0.32
ATL3-204ENST00000540699 MAP3K4Q9Y6R4 1608 aa16.99■□□□□ 0.31
ATL3-204ENST00000540699 NUP153P49790 1475 aaKnown RBP16.99■□□□□ 0.31
ATL3-204ENST00000540699 EPRSP07814 1512 aaKnown RBP16.98■□□□□ 0.31
ATL3-204ENST00000540699 ATP10BO94823 1461 aa16.97■□□□□ 0.31
ATL3-204ENST00000540699 HECW1Q76N89 1606 aa16.96■□□□□ 0.3
ATL3-204ENST00000540699 LRRIQ1Q96JM4 1722 aa16.94■□□□□ 0.3
ATL3-204ENST00000540699 PCF11O94913 1555 aaKnown RBP16.94■□□□□ 0.3
ATL3-204ENST00000540699 CASKIN1Q8WXD9 1431 aa16.93■□□□□ 0.3
ATL3-204ENST00000540699 FYCO1Q9BQS8 1478 aa16.91■□□□□ 0.3
ATL3-204ENST00000540699 WDR7Q9Y4E6 1490 aa16.91■□□□□ 0.3
ATL3-204ENST00000540699 TEX14Q8IWB6 1497 aa16.89■□□□□ 0.29
ATL3-204ENST00000540699 COL17A1Q9UMD9 1497 aaPredicted RBP16.87■□□□□ 0.29
ATL3-204ENST00000540699 CDK13Q14004 1512 aaKnown RBP16.86■□□□□ 0.29
ATL3-204ENST00000540699 CFAP43Q8NDM7 1665 aa16.86■□□□□ 0.29
ATL3-204ENST00000540699 CCDC18Q5T9S5 1454 aa16.85■□□□□ 0.29
ATL3-204ENST00000540699 ARID3CA6NKF2 412 aa16.83■□□□□ 0.28
ATL3-204ENST00000540699 VPS8Q8N3P4 1428 aa16.83■□□□□ 0.28
ATL3-204ENST00000540699 ADGRL1O94910 1474 aa16.8■□□□□ 0.28
ATL3-204ENST00000540699 MAGI3Q5TCQ9 1506 aa16.8■□□□□ 0.28
ATL3-204ENST00000540699 ABCA9Q8IUA7 1624 aa16.79■□□□□ 0.28
ATL3-204ENST00000540699 CD109Q6YHK3 1445 aa16.78■□□□□ 0.28
ATL3-204ENST00000540699 PLEKHD1A6NEE1 506 aa16.76■□□□□ 0.27
ATL3-204ENST00000540699 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.76■□□□□ 0.27
ATL3-204ENST00000540699 HNRNPUL2Q1KMD3 747 aaKnown RBP16.76■□□□□ 0.27
ATL3-204ENST00000540699 ATP1B4Q9UN42 357 aaPredicted RBP16.76■□□□□ 0.27
ATL3-204ENST00000540699 TROQ12816 1431 aaPredicted RBP16.75■□□□□ 0.27
ATL3-204ENST00000540699 CDK11AQ9UQ88 783 aaPredicted RBP16.74■□□□□ 0.27
ATL3-204ENST00000540699 KCNH8Q96L42 1107 aa16.73■□□□□ 0.27
ATL3-204ENST00000540699 MAP3K1Q13233 1512 aa16.73■□□□□ 0.27
ATL3-204ENST00000540699 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.72■□□□□ 0.27
ATL3-204ENST00000540699 TIAM1Q13009 1591 aa16.72■□□□□ 0.27
ATL3-204ENST00000540699 KIF14Q15058 1648 aa16.71■□□□□ 0.27
ATL3-204ENST00000540699 TTC37Q6PGP7 1564 aa16.71■□□□□ 0.27
ATL3-204ENST00000540699 EHBP1L1Q8N3D4 1523 aa16.67■□□□□ 0.26
ATL3-204ENST00000540699 ARAP3Q8WWN8 1544 aa16.67■□□□□ 0.26
ATL3-204ENST00000540699 MYO5CQ9NQX4 1742 aa16.67■□□□□ 0.26
ATL3-204ENST00000540699 CDC42BPAQ5VT25 1732 aa16.62■□□□□ 0.25
ATL3-204ENST00000540699 LRRC9Q6ZRR7 1453 aa16.62■□□□□ 0.25
ATL3-204ENST00000540699 CFAP74Q9C0B2 1584 aa16.62■□□□□ 0.25
ATL3-204ENST00000540699 PREX2Q70Z35 1606 aa16.62■□□□□ 0.25
ATL3-204ENST00000540699 MTUS2Q5JR59 1369 aa16.62■□□□□ 0.25
ATL3-204ENST00000540699 CDC42BPBQ9Y5S2 1711 aa16.62■□□□□ 0.25
ATL3-204ENST00000540699 PLCH2O75038 1416 aa16.62■□□□□ 0.25
ATL3-204ENST00000540699 HECW2Q9P2P5 1572 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms