RNA–Protein interactions for RNA: ENST00000540357.5

DNMT1-203, Transcript of DNA methyltransferase 1, humanhuman

TSL 5 BASIC

Gene DNMT1, Length 4,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-203ENST00000540357 SETD5Q9C0A6 1442 aa17.66■□□□□ 0.42
DNMT1-203ENST00000540357 NBR1Q14596 966 aa17.65■□□□□ 0.42
DNMT1-203ENST00000540357 SIN3AQ96ST3 1273 aa17.65■□□□□ 0.42
DNMT1-203ENST00000540357 KANK4Q5T7N3 995 aaPredicted RBP17.62■□□□□ 0.41
DNMT1-203ENST00000540357 MTUS2Q5JR59 1369 aa17.62■□□□□ 0.41
DNMT1-203ENST00000540357 RUSC2Q8N2Y8 1516 aa17.62■□□□□ 0.41
DNMT1-203ENST00000540357 NPM2Q86SE8 214 aaKnown RBP17.62■□□□□ 0.41
DNMT1-203ENST00000540357 ERICH6BQ5W0A0 696 aa17.61■□□□□ 0.41
DNMT1-203ENST00000540357 RAB3GAP2Q9H2M9 1393 aa17.59■□□□□ 0.41
DNMT1-203ENST00000540357 SMARCA4P51532 1647 aa17.58■□□□□ 0.4
DNMT1-203ENST00000540357 FHAD1B1AJZ9 1412 aa17.56■□□□□ 0.4
DNMT1-203ENST00000540357 RAPGEF2Q9Y4G8 1499 aa17.56■□□□□ 0.4
DNMT1-203ENST00000540357 SMARCA2P51531 1590 aa17.55■□□□□ 0.4
DNMT1-203ENST00000540357 NOP58Q9Y2X3 529 aaKnown RBP17.52■□□□□ 0.4
DNMT1-203ENST00000540357 TMC1Q8TDI8 760 aa17.51■□□□□ 0.39
DNMT1-203ENST00000540357 CHIC2Q9UKJ5 165 aa17.5■□□□□ 0.39
DNMT1-203ENST00000540357 KIF21BO75037 1637 aa17.47■□□□□ 0.39
DNMT1-203ENST00000540357 PPP1R15AO75807 674 aaPredicted RBP17.46■□□□□ 0.39
DNMT1-203ENST00000540357 ARHGAP35Q9NRY4 1499 aa17.43■□□□□ 0.38
DNMT1-203ENST00000540357 KCNH8Q96L42 1107 aa17.43■□□□□ 0.38
DNMT1-203ENST00000540357 DEKP35659 375 aaKnown RBP17.43■□□□□ 0.38
DNMT1-203ENST00000540357 RRP7BPQ9NSQ0 103 aa17.42■□□□□ 0.38
DNMT1-203ENST00000540357 DDRGK1Q96HY6 314 aa17.41■□□□□ 0.38
DNMT1-203ENST00000540357 B4GALNT3Q6L9W6 998 aa17.4■□□□□ 0.38
DNMT1-203ENST00000540357 CARMIL1Q5VZK9 1371 aa17.4■□□□□ 0.38
DNMT1-203ENST00000540357 FANCIQ9NVI1 1328 aa17.38■□□□□ 0.37
DNMT1-203ENST00000540357 ARID3CA6NKF2 412 aa17.37■□□□□ 0.37
DNMT1-203ENST00000540357 PPM1GO15355 546 aaPredicted RBP17.37■□□□□ 0.37
DNMT1-203ENST00000540357 CUX2O14529 1486 aa17.36■□□□□ 0.37
DNMT1-203ENST00000540357 EIF5BO60841 1220 aaKnown RBP17.34■□□□□ 0.37
DNMT1-203ENST00000540357 HSPA5P11021 654 aaKnown RBP17.34■□□□□ 0.37
DNMT1-203ENST00000540357 SLC4A1APQ9BWU0 796 aaKnown RBP17.34■□□□□ 0.37
DNMT1-203ENST00000540357 CANXP27824 592 aaKnown RBP17.33■□□□□ 0.37
DNMT1-203ENST00000540357 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.32■□□□□ 0.36
DNMT1-203ENST00000540357 ZNF777Q9ULD5 760 aaPredicted RBP17.32■□□□□ 0.36
DNMT1-203ENST00000540357 RRBP1Q9P2E9 1410 aaKnown RBP17.32■□□□□ 0.36
DNMT1-203ENST00000540357 SALL2Q9Y467 1007 aaPredicted RBP17.3■□□□□ 0.36
DNMT1-203ENST00000540357 ERICH3Q5RHP9 1530 aa17.26■□□□□ 0.35
DNMT1-203ENST00000540357 ATAD2BQ9ULI0 1458 aa17.26■□□□□ 0.35
DNMT1-203ENST00000540357 NEFMP07197 916 aa17.25■□□□□ 0.35
DNMT1-203ENST00000540357 UPF2Q9HAU5 1272 aaKnown RBP17.24■□□□□ 0.35
DNMT1-203ENST00000540357 FMN1Q68DA7 1419 aa17.22■□□□□ 0.35
DNMT1-203ENST00000540357 GLIPR1L2Q4G1C9 344 aa17.21■□□□□ 0.35
DNMT1-203ENST00000540357 SYNJ1O43426 1573 aa17.21■□□□□ 0.35
DNMT1-203ENST00000540357 IPO9Q96P70 1041 aaKnown RBP17.2■□□□□ 0.34
DNMT1-203ENST00000540357 WDR43Q15061 677 aaKnown RBP eCLIP17.19■□□□□ 0.34
DNMT1-203ENST00000540357 LAS1LQ9Y4W2 734 aaKnown RBP17.18■□□□□ 0.34
DNMT1-203ENST00000540357 KDM2AQ9Y2K7 1162 aa17.17■□□□□ 0.34
DNMT1-203ENST00000540357 ARAP1Q96P48 1450 aa17.17■□□□□ 0.34
DNMT1-203ENST00000540357 NUDCQ9Y266 331 aa17.16■□□□□ 0.34
DNMT1-203ENST00000540357 ZBED9Q6R2W3 1325 aa17.15■□□□□ 0.34
DNMT1-203ENST00000540357 CARD11Q9BXL7 1154 aa17.15■□□□□ 0.34
DNMT1-203ENST00000540357 TCERG1O14776 1098 aaKnown RBP17.14■□□□□ 0.33
DNMT1-203ENST00000540357 TSPY4P0CV99 314 aa17.13■□□□□ 0.33
DNMT1-203ENST00000540357 TSPY10P0CW01 314 aa17.13■□□□□ 0.33
DNMT1-203ENST00000540357 BECN1Q14457 450 aa17.13■□□□□ 0.33
DNMT1-203ENST00000540357 CCDC18Q5T9S5 1454 aa17.12■□□□□ 0.33
DNMT1-203ENST00000540357 MPHOSPH9Q99550 1183 aa17.11■□□□□ 0.33
DNMT1-203ENST00000540357 LRRC9Q6ZRR7 1453 aa17.11■□□□□ 0.33
DNMT1-203ENST00000540357 PRXQ9BXM0 1461 aa17.09■□□□□ 0.33
DNMT1-203ENST00000540357 FHOD3Q2V2M9 1422 aa17.09■□□□□ 0.33
DNMT1-203ENST00000540357 PRKRIP1Q9H875 184 aaPredicted RBP17.09■□□□□ 0.33
DNMT1-203ENST00000540357 RTN4Q9NQC3 1192 aaKnown RBP17.09■□□□□ 0.33
DNMT1-203ENST00000540357 FBLN2P98095 1184 aa17.07■□□□□ 0.32
DNMT1-203ENST00000540357 PHLDB1Q86UU1 1377 aa17.07■□□□□ 0.32
DNMT1-203ENST00000540357 SENP3-EIF4A1A0A087X0R7 540 aa17.07■□□□□ 0.32
DNMT1-203ENST00000540357 L3MBTL2Q969R5 705 aa17.06■□□□□ 0.32
DNMT1-203ENST00000540357 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
DNMT1-203ENST00000540357 ANP32BQ92688 251 aaKnown RBP17.06■□□□□ 0.32
DNMT1-203ENST00000540357 USP35Q9P2H5 1018 aa17.06■□□□□ 0.32
DNMT1-203ENST00000540357 TOP2BQ02880 1626 aa17.06■□□□□ 0.32
DNMT1-203ENST00000540357 UACAQ9BZF9 1416 aa17.05■□□□□ 0.32
DNMT1-203ENST00000540357 CFDP1Q9UEE9 299 aaPredicted RBP17.04■□□□□ 0.32
DNMT1-203ENST00000540357 RALBP1Q15311 655 aa17.03■□□□□ 0.32
DNMT1-203ENST00000540357 RCAN3Q9UKA8 241 aa17.03■□□□□ 0.32
DNMT1-203ENST00000540357 ROCK2O75116 1388 aaKnown RBP17.01■□□□□ 0.31
DNMT1-203ENST00000540357 WDR97A6NE52 1622 aa17.01■□□□□ 0.31
DNMT1-203ENST00000540357 CNTLNQ9NXG0 1405 aa17.01■□□□□ 0.31
DNMT1-203ENST00000540357 IGF1RP08069 1367 aa17.01■□□□□ 0.31
DNMT1-203ENST00000540357 FGD6Q6ZV73 1430 aa17■□□□□ 0.31
DNMT1-203ENST00000540357 FOXD1Q16676 465 aa16.99■□□□□ 0.31
DNMT1-203ENST00000540357 PDE3BQ13370 1112 aa16.98■□□□□ 0.31
DNMT1-203ENST00000540357 HSP90AA1P07900 732 aaKnown RBP16.97■□□□□ 0.31
DNMT1-203ENST00000540357 TIAM1Q13009 1591 aa16.97■□□□□ 0.31
DNMT1-203ENST00000540357 KTN1Q86UP2 1357 aaKnown RBP16.97■□□□□ 0.31
DNMT1-203ENST00000540357 CDCA8Q53HL2 280 aa16.96■□□□□ 0.31
DNMT1-203ENST00000540357 CUX1P39880 1505 aa16.96■□□□□ 0.31
DNMT1-203ENST00000540357 KNSTRNQ9Y448 316 aa16.96■□□□□ 0.31
DNMT1-203ENST00000540357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.95■□□□□ 0.33e-7■■■■□ 23.2
DNMT1-203ENST00000540357 CCDC7Q96M83 1385 aa16.95■□□□□ 0.3
DNMT1-203ENST00000540357 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
DNMT1-203ENST00000540357 WASHC2AQ641Q2 1341 aa16.93■□□□□ 0.3
DNMT1-203ENST00000540357 PLEKHD1A6NEE1 506 aa16.92■□□□□ 0.3
DNMT1-203ENST00000540357 CASKIN1Q8WXD9 1431 aa16.92■□□□□ 0.3
DNMT1-203ENST00000540357 RGS3P49796 1198 aa16.92■□□□□ 0.3
DNMT1-203ENST00000540357 KIF15Q9NS87 1388 aa16.91■□□□□ 0.3
DNMT1-203ENST00000540357 ARXQ96QS3 562 aa16.91■□□□□ 0.3
DNMT1-203ENST00000540357 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.91■□□□□ 0.39e-8■□□□□ 9.9
DNMT1-203ENST00000540357 FYCO1Q9BQS8 1478 aa16.91■□□□□ 0.3
DNMT1-203ENST00000540357 MS4A1P11836 297 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms