RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 CHIC1Q5VXU3 224 aa18.16■□□□□ 0.5
HMGA2-209ENST00000539662 JPH4Q96JJ6 628 aa18.13■□□□□ 0.49
HMGA2-209ENST00000539662 PRG4Q92954 1404 aaPredicted RBP18.12■□□□□ 0.49
HMGA2-209ENST00000539662 KIAA0586Q9BVV6 1533 aa18.12■□□□□ 0.49
HMGA2-209ENST00000539662 RAPGEF2Q9Y4G8 1499 aa18.11■□□□□ 0.49
HMGA2-209ENST00000539662 PRXQ9BXM0 1461 aa18.07■□□□□ 0.48
HMGA2-209ENST00000539662 FAM9AQ8IZU1 332 aaPredicted RBP18.06■□□□□ 0.48
HMGA2-209ENST00000539662 IQGAP2Q13576 1575 aa18.02■□□□□ 0.48
HMGA2-209ENST00000539662 CSRNP3Q8WYN3 585 aa18.02■□□□□ 0.48
HMGA2-209ENST00000539662 CTTNBP2Q8WZ74 1663 aa17.98■□□□□ 0.47
HMGA2-209ENST00000539662 DISP1Q96F81 1524 aa17.95■□□□□ 0.46
HMGA2-209ENST00000539662 EEA1Q15075 1411 aa17.95■□□□□ 0.46
HMGA2-209ENST00000539662 TTBK1Q5TCY1 1321 aaPredicted RBP17.93■□□□□ 0.46
HMGA2-209ENST00000539662 UGGT2Q9NYU1 1516 aa17.93■□□□□ 0.46
HMGA2-209ENST00000539662 EHMT2Q96KQ7 1210 aa17.89■□□□□ 0.45
HMGA2-209ENST00000539662 ADCY10Q96PN6 1610 aa17.88■□□□□ 0.45
HMGA2-209ENST00000539662 KIAA0556O60303 1618 aa17.87■□□□□ 0.45
HMGA2-209ENST00000539662 PTPRGP23470 1445 aa17.87■□□□□ 0.45
HMGA2-209ENST00000539662 CARMIL2Q6F5E8 1435 aa17.87■□□□□ 0.45
HMGA2-209ENST00000539662 TNIKQ9UKE5 1360 aa17.86■□□□□ 0.45
HMGA2-209ENST00000539662 KIF21BO75037 1637 aa17.86■□□□□ 0.45
HMGA2-209ENST00000539662 TRHP20396 242 aaPredicted RBP17.85■□□□□ 0.45
HMGA2-209ENST00000539662 RANGAP1P46060 587 aaPredicted RBP17.79■□□□□ 0.44
HMGA2-209ENST00000539662 P3H3Q8IVL6 736 aa17.79■□□□□ 0.44
HMGA2-209ENST00000539662 GOLGA3Q08378 1498 aa17.75■□□□□ 0.43
HMGA2-209ENST00000539662 SAMD9Q5K651 1589 aa17.75■□□□□ 0.43
HMGA2-209ENST00000539662 UACAQ9BZF9 1416 aa17.74■□□□□ 0.43
HMGA2-209ENST00000539662 PLB1Q6P1J6 1458 aa17.74■□□□□ 0.43
HMGA2-209ENST00000539662 ABCC2Q92887 1545 aa17.72■□□□□ 0.43
HMGA2-209ENST00000539662 KIF13AQ9H1H9 1805 aa17.72■□□□□ 0.43
HMGA2-209ENST00000539662 UHRF1BP1LA0JNW5 1464 aa17.72■□□□□ 0.43
HMGA2-209ENST00000539662 NPM1P06748 294 aaKnown RBP eCLIP17.71■□□□□ 0.43
HMGA2-209ENST00000539662 MAPKBP1O60336 1514 aa17.71■□□□□ 0.43
HMGA2-209ENST00000539662 UBTFP17480 764 aaKnown RBP17.7■□□□□ 0.42
HMGA2-209ENST00000539662 ABCA8O94911 1581 aa17.69■□□□□ 0.42
HMGA2-209ENST00000539662 FHOD3Q2V2M9 1422 aa17.67■□□□□ 0.42
HMGA2-209ENST00000539662 ZCCHC11Q5TAX3 1644 aaKnown RBP17.66■□□□□ 0.42
HMGA2-209ENST00000539662 KDM5BQ9UGL1 1544 aa17.66■□□□□ 0.42
HMGA2-209ENST00000539662 DIP2BQ9P265 1576 aa17.65■□□□□ 0.42
HMGA2-209ENST00000539662 ABCC10Q5T3U5 1492 aa17.64■□□□□ 0.41
HMGA2-209ENST00000539662 ARID3CA6NKF2 412 aa17.63■□□□□ 0.41
HMGA2-209ENST00000539662 FAM69CQ0P6D2 419 aa17.63■□□□□ 0.41
HMGA2-209ENST00000539662 ASXL2Q76L83 1435 aa17.63■□□□□ 0.41
HMGA2-209ENST00000539662 EFCAB5A4FU69 1503 aa17.59■□□□□ 0.41
HMGA2-209ENST00000539662 ARHGAP35Q9NRY4 1499 aa17.59■□□□□ 0.41
HMGA2-209ENST00000539662 RAPGEF6Q8TEU7 1601 aa17.58■□□□□ 0.41
HMGA2-209ENST00000539662 ATP10BO94823 1461 aa17.56■□□□□ 0.4
HMGA2-209ENST00000539662 TSPOAP1O95153 1857 aa17.55■□□□□ 0.4
HMGA2-209ENST00000539662 NUP153P49790 1475 aaKnown RBP17.54■□□□□ 0.4
HMGA2-209ENST00000539662 EPRSP07814 1512 aaKnown RBP17.53■□□□□ 0.4
HMGA2-209ENST00000539662 WDR7Q9Y4E6 1490 aa17.5■□□□□ 0.39
HMGA2-209ENST00000539662 GLI2P10070 1586 aa17.5■□□□□ 0.39
HMGA2-209ENST00000539662 PPRC1Q5VV67 1664 aaKnown RBP17.5■□□□□ 0.39
HMGA2-209ENST00000539662 LOC105371045A0A1W2PR82 267 aa17.49■□□□□ 0.39
HMGA2-209ENST00000539662 KCNH8Q96L42 1107 aa17.48■□□□□ 0.39
HMGA2-209ENST00000539662 MAP3K4Q9Y6R4 1608 aa17.46■□□□□ 0.39
HMGA2-209ENST00000539662 CDK13Q14004 1512 aaKnown RBP17.44■□□□□ 0.38
HMGA2-209ENST00000539662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.44■□□□□ 0.38
HMGA2-209ENST00000539662 HNRNPUL2Q1KMD3 747 aaKnown RBP17.44■□□□□ 0.38
HMGA2-209ENST00000539662 LRRIQ1Q96JM4 1722 aa17.44■□□□□ 0.38
HMGA2-209ENST00000539662 CLIP1P30622 1438 aa17.42■□□□□ 0.38
HMGA2-209ENST00000539662 FMN1Q68DA7 1419 aa17.41■□□□□ 0.38
HMGA2-209ENST00000539662 ATP1B4Q9UN42 357 aaPredicted RBP17.41■□□□□ 0.38
HMGA2-209ENST00000539662 PCF11O94913 1555 aaKnown RBP17.39■□□□□ 0.37
HMGA2-209ENST00000539662 HECW1Q76N89 1606 aa17.37■□□□□ 0.37
HMGA2-209ENST00000539662 CFAP43Q8NDM7 1665 aa17.36■□□□□ 0.37
HMGA2-209ENST00000539662 CD109Q6YHK3 1445 aa17.36■□□□□ 0.37
HMGA2-209ENST00000539662 COL17A1Q9UMD9 1497 aaPredicted RBP17.36■□□□□ 0.37
HMGA2-209ENST00000539662 KDM6BO15054 1643 aa17.36■□□□□ 0.37
HMGA2-209ENST00000539662 AEBP2Q6ZN18 517 aaPredicted RBP17.35■□□□□ 0.37
HMGA2-209ENST00000539662 CEP162Q5TB80 1403 aa17.35■□□□□ 0.37
HMGA2-209ENST00000539662 ABCA9Q8IUA7 1624 aa17.34■□□□□ 0.37
HMGA2-209ENST00000539662 CASKIN1Q8WXD9 1431 aa17.32■□□□□ 0.36
HMGA2-209ENST00000539662 PLEKHD1A6NEE1 506 aa17.32■□□□□ 0.36
HMGA2-209ENST00000539662 MAGI3Q5TCQ9 1506 aa17.31■□□□□ 0.36
HMGA2-209ENST00000539662 TTC37Q6PGP7 1564 aa17.29■□□□□ 0.36
HMGA2-209ENST00000539662 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.29■□□□□ 0.36
HMGA2-209ENST00000539662 TEX14Q8IWB6 1497 aa17.28■□□□□ 0.36
HMGA2-209ENST00000539662 KIF14Q15058 1648 aa17.28■□□□□ 0.36
HMGA2-209ENST00000539662 FYCO1Q9BQS8 1478 aa17.26■□□□□ 0.35
HMGA2-209ENST00000539662 TROQ12816 1431 aaPredicted RBP17.21■□□□□ 0.35
HMGA2-209ENST00000539662 CCDC18Q5T9S5 1454 aa17.21■□□□□ 0.35
HMGA2-209ENST00000539662 CDK11AQ9UQ88 783 aaPredicted RBP17.18■□□□□ 0.34
HMGA2-209ENST00000539662 ARAP3Q8WWN8 1544 aa17.16■□□□□ 0.34
HMGA2-209ENST00000539662 RAPGEF3O95398 923 aa17.15■□□□□ 0.34
HMGA2-209ENST00000539662 NEO1Q92859 1461 aa17.15■□□□□ 0.34
HMGA2-209ENST00000539662 MYO5CQ9NQX4 1742 aa17.15■□□□□ 0.34
HMGA2-209ENST00000539662 PLCH2O75038 1416 aa17.14■□□□□ 0.33
HMGA2-209ENST00000539662 FANCAO15360 1455 aa17.14■□□□□ 0.33
HMGA2-209ENST00000539662 FRMPD1Q5SYB0 1578 aa17.14■□□□□ 0.33
HMGA2-209ENST00000539662 AKNAQ7Z591 1439 aa17.13■□□□□ 0.33
HMGA2-209ENST00000539662 VPS8Q8N3P4 1428 aa17.13■□□□□ 0.33
HMGA2-209ENST00000539662 CDC42BPBQ9Y5S2 1711 aa17.12■□□□□ 0.33
HMGA2-209ENST00000539662 CDC42BPAQ5VT25 1732 aa17.1■□□□□ 0.33
HMGA2-209ENST00000539662 RICTORQ6R327 1708 aa17.09■□□□□ 0.33
HMGA2-209ENST00000539662 CFAP74Q9C0B2 1584 aa17.08■□□□□ 0.32
HMGA2-209ENST00000539662 PHLDB1Q86UU1 1377 aa17.08■□□□□ 0.32
HMGA2-209ENST00000539662 PREX2Q70Z35 1606 aa17.07■□□□□ 0.32
HMGA2-209ENST00000539662 ARHGAP5Q13017 1502 aa17.07■□□□□ 0.32
HMGA2-209ENST00000539662 TIAM1Q13009 1591 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms