RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 CTTNBP2Q8WZ74 1663 aa21.63■■□□□ 1.05
CCDC42-202ENST00000539522 KIAA0586Q9BVV6 1533 aa21.62■■□□□ 1.05
CCDC42-202ENST00000539522 ERCC6L2Q5T890 1561 aa21.61■■□□□ 1.05
CCDC42-202ENST00000539522 RIMBP3CA6NJZ7 1639 aa21.58■■□□□ 1.05
CCDC42-202ENST00000539522 RIMBP3BA6NNM3 1639 aa21.58■■□□□ 1.05
CCDC42-202ENST00000539522 RIMBP3Q9UFD9 1639 aa21.58■■□□□ 1.05
CCDC42-202ENST00000539522 ARHGEF11O15085 1522 aa21.58■■□□□ 1.04
CCDC42-202ENST00000539522 IQGAP2Q13576 1575 aa21.57■■□□□ 1.04
CCDC42-202ENST00000539522 GOLGA3Q08378 1498 aa21.51■■□□□ 1.03
CCDC42-202ENST00000539522 JPH4Q96JJ6 628 aa21.49■■□□□ 1.03
CCDC42-202ENST00000539522 UGGT2Q9NYU1 1516 aa21.48■■□□□ 1.03
CCDC42-202ENST00000539522 EHMT2Q96KQ7 1210 aa21.47■■□□□ 1.03
CCDC42-202ENST00000539522 PRG4Q92954 1404 aaPredicted RBP21.46■■□□□ 1.03
CCDC42-202ENST00000539522 DISP1Q96F81 1524 aa21.46■■□□□ 1.03
CCDC42-202ENST00000539522 ARAP1Q96P48 1450 aa21.45■■□□□ 1.03
CCDC42-202ENST00000539522 KIAA0556O60303 1618 aa21.4■■□□□ 1.02
CCDC42-202ENST00000539522 SAMD9Q5K651 1589 aa21.39■■□□□ 1.01
CCDC42-202ENST00000539522 LOC105371045A0A1W2PR82 267 aa21.34■■□□□ 1.01
CCDC42-202ENST00000539522 UBTFP17480 764 aaKnown RBP21.32■■□□□ 1
CCDC42-202ENST00000539522 TNIKQ9UKE5 1360 aa21.29■■□□□ 1
CCDC42-202ENST00000539522 CARMIL2Q6F5E8 1435 aa21.27■■□□□ 1
CCDC42-202ENST00000539522 CYB5RLQ6IPT4 315 aa21.26■□□□□ 0.99
CCDC42-202ENST00000539522 ARHGAP35Q9NRY4 1499 aa21.26■□□□□ 0.99
CCDC42-202ENST00000539522 EFCAB5A4FU69 1503 aa21.24■□□□□ 0.99
CCDC42-202ENST00000539522 RANGAP1P46060 587 aaPredicted RBP21.23■□□□□ 0.99
CCDC42-202ENST00000539522 ADCY10Q96PN6 1610 aa21.22■□□□□ 0.99
CCDC42-202ENST00000539522 P3H3Q8IVL6 736 aa21.21■□□□□ 0.99
CCDC42-202ENST00000539522 FHOD3Q2V2M9 1422 aa21.21■□□□□ 0.99
CCDC42-202ENST00000539522 PTPRGP23470 1445 aa21.2■□□□□ 0.98
CCDC42-202ENST00000539522 ABCA8O94911 1581 aa21.16■□□□□ 0.98
CCDC42-202ENST00000539522 PLB1Q6P1J6 1458 aa21.15■□□□□ 0.98
CCDC42-202ENST00000539522 CEP162Q5TB80 1403 aa21.13■□□□□ 0.97
CCDC42-202ENST00000539522 TTBK1Q5TCY1 1321 aaPredicted RBP21.13■□□□□ 0.97
CCDC42-202ENST00000539522 CLIP1P30622 1438 aa21.12■□□□□ 0.97
CCDC42-202ENST00000539522 UHRF1BP1LA0JNW5 1464 aa21.11■□□□□ 0.97
CCDC42-202ENST00000539522 ABCC2Q92887 1545 aa21.1■□□□□ 0.97
CCDC42-202ENST00000539522 UACAQ9BZF9 1416 aa21.1■□□□□ 0.97
CCDC42-202ENST00000539522 RAPGEF6Q8TEU7 1601 aa21.07■□□□□ 0.96
CCDC42-202ENST00000539522 LRRIQ1Q96JM4 1722 aa21.04■□□□□ 0.96
CCDC42-202ENST00000539522 KDM5BQ9UGL1 1544 aa21.03■□□□□ 0.96
CCDC42-202ENST00000539522 ZCCHC11Q5TAX3 1644 aaKnown RBP21.02■□□□□ 0.96
CCDC42-202ENST00000539522 NUP153P49790 1475 aaKnown RBP21.01■□□□□ 0.95
CCDC42-202ENST00000539522 PCF11O94913 1555 aaKnown RBP21■□□□□ 0.95
CCDC42-202ENST00000539522 FMN1Q68DA7 1419 aa20.97■□□□□ 0.95
CCDC42-202ENST00000539522 ATP10BO94823 1461 aa20.96■□□□□ 0.95
CCDC42-202ENST00000539522 MAPKBP1O60336 1514 aa20.95■□□□□ 0.94
CCDC42-202ENST00000539522 CASKIN1Q8WXD9 1431 aa20.92■□□□□ 0.94
CCDC42-202ENST00000539522 HECW1Q76N89 1606 aa20.91■□□□□ 0.94
CCDC42-202ENST00000539522 CDK13Q14004 1512 aaKnown RBP20.9■□□□□ 0.94
CCDC42-202ENST00000539522 ARID3CA6NKF2 412 aa20.89■□□□□ 0.93
CCDC42-202ENST00000539522 EPRSP07814 1512 aaKnown RBP20.88■□□□□ 0.93
CCDC42-202ENST00000539522 FYCO1Q9BQS8 1478 aa20.88■□□□□ 0.93
CCDC42-202ENST00000539522 KIF13AQ9H1H9 1805 aa20.88■□□□□ 0.93
CCDC42-202ENST00000539522 ASXL2Q76L83 1435 aa20.87■□□□□ 0.93
CCDC42-202ENST00000539522 VPS8Q8N3P4 1428 aa20.85■□□□□ 0.93
CCDC42-202ENST00000539522 DIP2BQ9P265 1576 aa20.84■□□□□ 0.93
CCDC42-202ENST00000539522 MAGI3Q5TCQ9 1506 aa20.82■□□□□ 0.92
CCDC42-202ENST00000539522 NPM1P06748 294 aaKnown RBP eCLIP20.8■□□□□ 0.92
CCDC42-202ENST00000539522 ABCC10Q5T3U5 1492 aa20.8■□□□□ 0.92
CCDC42-202ENST00000539522 WDR7Q9Y4E6 1490 aa20.8■□□□□ 0.92
CCDC42-202ENST00000539522 CFAP43Q8NDM7 1665 aa20.76■□□□□ 0.91
CCDC42-202ENST00000539522 GLI2P10070 1586 aa20.75■□□□□ 0.91
CCDC42-202ENST00000539522 CCDC18Q5T9S5 1454 aa20.75■□□□□ 0.91
CCDC42-202ENST00000539522 ATP1B4Q9UN42 357 aaPredicted RBP20.74■□□□□ 0.91
CCDC42-202ENST00000539522 PPRC1Q5VV67 1664 aaKnown RBP20.71■□□□□ 0.91
CCDC42-202ENST00000539522 TIAM1Q13009 1591 aa20.71■□□□□ 0.91
CCDC42-202ENST00000539522 KIF14Q15058 1648 aa20.71■□□□□ 0.91
CCDC42-202ENST00000539522 MAP3K4Q9Y6R4 1608 aa20.71■□□□□ 0.91
CCDC42-202ENST00000539522 ABCA9Q8IUA7 1624 aa20.68■□□□□ 0.9
CCDC42-202ENST00000539522 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.67■□□□□ 0.9
CCDC42-202ENST00000539522 HNRNPUL2Q1KMD3 747 aaKnown RBP20.67■□□□□ 0.9
CCDC42-202ENST00000539522 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.67■□□□□ 0.9
CCDC42-202ENST00000539522 TTC37Q6PGP7 1564 aa20.67■□□□□ 0.9
CCDC42-202ENST00000539522 FAM69CQ0P6D2 419 aa20.66■□□□□ 0.9
CCDC42-202ENST00000539522 TROQ12816 1431 aaPredicted RBP20.66■□□□□ 0.9
CCDC42-202ENST00000539522 MAP3K1Q13233 1512 aa20.65■□□□□ 0.9
CCDC42-202ENST00000539522 TRHP20396 242 aaPredicted RBP20.64■□□□□ 0.89
CCDC42-202ENST00000539522 KCNH8Q96L42 1107 aa20.64■□□□□ 0.89
CCDC42-202ENST00000539522 TSPOAP1O95153 1857 aa20.63■□□□□ 0.89
CCDC42-202ENST00000539522 PLEKHD1A6NEE1 506 aa20.63■□□□□ 0.89
CCDC42-202ENST00000539522 KANK4Q5T7N3 995 aaPredicted RBP20.6■□□□□ 0.89
CCDC42-202ENST00000539522 EHBP1L1Q8N3D4 1523 aa20.58■□□□□ 0.89
CCDC42-202ENST00000539522 LRRC9Q6ZRR7 1453 aa20.58■□□□□ 0.89
CCDC42-202ENST00000539522 CDC42BPAQ5VT25 1732 aa20.55■□□□□ 0.88
CCDC42-202ENST00000539522 CD109Q6YHK3 1445 aa20.54■□□□□ 0.88
CCDC42-202ENST00000539522 CDK11AQ9UQ88 783 aaPredicted RBP20.54■□□□□ 0.88
CCDC42-202ENST00000539522 CDC42BPBQ9Y5S2 1711 aa20.53■□□□□ 0.88
CCDC42-202ENST00000539522 MYO5CQ9NQX4 1742 aa20.53■□□□□ 0.88
CCDC42-202ENST00000539522 MTUS2Q5JR59 1369 aa20.51■□□□□ 0.87
CCDC42-202ENST00000539522 PREX2Q70Z35 1606 aa20.5■□□□□ 0.87
CCDC42-202ENST00000539522 SUPT6HQ7KZ85 1726 aaKnown RBP20.5■□□□□ 0.87
CCDC42-202ENST00000539522 NCOA2Q15596 1464 aa20.48■□□□□ 0.87
CCDC42-202ENST00000539522 GPATCH8Q9UKJ3 1502 aaKnown RBP20.48■□□□□ 0.87
CCDC42-202ENST00000539522 PLCH2O75038 1416 aa20.47■□□□□ 0.87
CCDC42-202ENST00000539522 COL17A1Q9UMD9 1497 aaPredicted RBP20.46■□□□□ 0.87
CCDC42-202ENST00000539522 ARAP3Q8WWN8 1544 aa20.46■□□□□ 0.87
CCDC42-202ENST00000539522 TEX14Q8IWB6 1497 aa20.41■□□□□ 0.86
CCDC42-202ENST00000539522 FANCAO15360 1455 aa20.4■□□□□ 0.86
CCDC42-202ENST00000539522 SAMD9LQ8IVG5 1584 aa20.39■□□□□ 0.85
CCDC42-202ENST00000539522 NEO1Q92859 1461 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms