RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 DNMBPQ6XZF7 1577 aa18.44■□□□□ 0.54
SFSWAP-208ENST00000539506 CLSPNQ9HAW4 1339 aa18.42■□□□□ 0.54
SFSWAP-208ENST00000539506 ABCA10Q8WWZ4 1543 aa18.41■□□□□ 0.54
SFSWAP-208ENST00000539506 MAP3K1Q13233 1512 aa18.39■□□□□ 0.53
SFSWAP-208ENST00000539506 DNAJC5BQ9UF47 199 aa18.39■□□□□ 0.53
SFSWAP-208ENST00000539506 LRRC9Q6ZRR7 1453 aa18.39■□□□□ 0.53
SFSWAP-208ENST00000539506 PHLDB1Q86UU1 1377 aa18.38■□□□□ 0.53
SFSWAP-208ENST00000539506 FHOD3Q2V2M9 1422 aa18.35■□□□□ 0.53
SFSWAP-208ENST00000539506 PCF11O94913 1555 aaKnown RBP18.35■□□□□ 0.53
SFSWAP-208ENST00000539506 URB2Q14146 1524 aaKnown RBP18.33■□□□□ 0.53
SFSWAP-208ENST00000539506 RAB3GAP2Q9H2M9 1393 aa18.33■□□□□ 0.52
SFSWAP-208ENST00000539506 MYT1Q01538 1121 aa18.32■□□□□ 0.52
SFSWAP-208ENST00000539506 FHAD1B1AJZ9 1412 aa18.31■□□□□ 0.52
SFSWAP-208ENST00000539506 ATP1B4Q9UN42 357 aaPredicted RBP18.29■□□□□ 0.52
SFSWAP-208ENST00000539506 CFAP43Q8NDM7 1665 aa18.28■□□□□ 0.52
SFSWAP-208ENST00000539506 BCANQ96GW7 911 aa18.28■□□□□ 0.52
SFSWAP-208ENST00000539506 MAPKBP1O60336 1514 aa18.27■□□□□ 0.52
SFSWAP-208ENST00000539506 TDRD9Q8NDG6 1382 aaKnown RBP18.27■□□□□ 0.51
SFSWAP-208ENST00000539506 LAMC3Q9Y6N6 1575 aa18.25■□□□□ 0.51
SFSWAP-208ENST00000539506 WDR97A6NE52 1622 aa18.25■□□□□ 0.51
SFSWAP-208ENST00000539506 CUL7Q14999 1698 aa18.25■□□□□ 0.51
SFSWAP-208ENST00000539506 KCNH8Q96L42 1107 aa18.25■□□□□ 0.51
SFSWAP-208ENST00000539506 FAM50AQ14320 339 aaKnown RBP18.24■□□□□ 0.51
SFSWAP-208ENST00000539506 SUPT16HQ9Y5B9 1047 aaKnown RBP18.24■□□□□ 0.51
SFSWAP-208ENST00000539506 SETD5Q9C0A6 1442 aa18.23■□□□□ 0.51
SFSWAP-208ENST00000539506 CASKIN1Q8WXD9 1431 aa18.22■□□□□ 0.51
SFSWAP-208ENST00000539506 FYCO1Q9BQS8 1478 aa18.22■□□□□ 0.51
SFSWAP-208ENST00000539506 EFCAB5A4FU69 1503 aa18.22■□□□□ 0.51
SFSWAP-208ENST00000539506 CTTNBP2Q8WZ74 1663 aa18.21■□□□□ 0.51
SFSWAP-208ENST00000539506 ABCA5Q8WWZ7 1642 aa18.2■□□□□ 0.5
SFSWAP-208ENST00000539506 AQRO60306 1485 aaKnown RBP eCLIP18.18■□□□□ 0.53e-11■■■□□ 18.3
SFSWAP-208ENST00000539506 SNAPC4Q5SXM2 1469 aa18.18■□□□□ 0.5
SFSWAP-208ENST00000539506 GAPVD1Q14C86 1478 aa18.17■□□□□ 0.5
SFSWAP-208ENST00000539506 SIN3AQ96ST3 1273 aa18.15■□□□□ 0.5
SFSWAP-208ENST00000539506 KIF21AQ7Z4S6 1674 aa18.14■□□□□ 0.49
SFSWAP-208ENST00000539506 PDS5BQ9NTI5 1447 aa18.14■□□□□ 0.49
SFSWAP-208ENST00000539506 FMN1Q68DA7 1419 aa18.12■□□□□ 0.49
SFSWAP-208ENST00000539506 SAMD9Q5K651 1589 aa18.12■□□□□ 0.49
SFSWAP-208ENST00000539506 LRRIQ1Q96JM4 1722 aa18.12■□□□□ 0.49
SFSWAP-208ENST00000539506 AEBP2Q6ZN18 517 aaPredicted RBP18.1■□□□□ 0.49
SFSWAP-208ENST00000539506 TSHZ2Q9NRE2 1034 aa18.09■□□□□ 0.49
SFSWAP-208ENST00000539506 TARBP1Q13395 1621 aaKnown RBP18.08■□□□□ 0.49
SFSWAP-208ENST00000539506 FGD6Q6ZV73 1430 aa18.08■□□□□ 0.48
SFSWAP-208ENST00000539506 HIRIP3Q9BW71 556 aaPredicted RBP18.07■□□□□ 0.48
SFSWAP-208ENST00000539506 PTPRKQ15262 1439 aa18.07■□□□□ 0.48
SFSWAP-208ENST00000539506 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.07■□□□□ 0.48
SFSWAP-208ENST00000539506 GRIN2BQ13224 1484 aa18.06■□□□□ 0.48
SFSWAP-208ENST00000539506 MTUS2Q5JR59 1369 aa18.04■□□□□ 0.48
SFSWAP-208ENST00000539506 NCOA2Q15596 1464 aa18■□□□□ 0.47
SFSWAP-208ENST00000539506 MAGI3Q5TCQ9 1506 aa17.99■□□□□ 0.47
SFSWAP-208ENST00000539506 DDX10Q13206 875 aaKnown RBP17.97■□□□□ 0.47
SFSWAP-208ENST00000539506 FKBP8Q14318 412 aa17.97■□□□□ 0.47
SFSWAP-208ENST00000539506 MYOM3Q5VTT5 1437 aa17.96■□□□□ 0.47
SFSWAP-208ENST00000539506 HFM1A2PYH4 1435 aa17.95■□□□□ 0.46
SFSWAP-208ENST00000539506 PBRM1Q86U86 1689 aa17.94■□□□□ 0.46
SFSWAP-208ENST00000539506 CCDC18Q5T9S5 1454 aa17.94■□□□□ 0.46
SFSWAP-208ENST00000539506 PPP1R15AO75807 674 aaPredicted RBP17.94■□□□□ 0.46
SFSWAP-208ENST00000539506 THOC2Q8NI27 1593 aaKnown RBP17.93■□□□□ 0.46
SFSWAP-208ENST00000539506 NAIPQ13075 1403 aa17.92■□□□□ 0.46
SFSWAP-208ENST00000539506 PTPN23Q9H3S7 1636 aa17.92■□□□□ 0.46
SFSWAP-208ENST00000539506 ARHGEF11O15085 1522 aa17.92■□□□□ 0.46
SFSWAP-208ENST00000539506 TRIM52Q96A61 297 aa17.92■□□□□ 0.46
SFSWAP-208ENST00000539506 UGGT2Q9NYU1 1516 aa17.91■□□□□ 0.46
SFSWAP-208ENST00000539506 SUPT6HQ7KZ85 1726 aaKnown RBP17.91■□□□□ 0.46
SFSWAP-208ENST00000539506 EHBP1L1Q8N3D4 1523 aa17.91■□□□□ 0.46
SFSWAP-208ENST00000539506 TIMELESSQ9UNS1 1208 aa17.9■□□□□ 0.46
SFSWAP-208ENST00000539506 ADAMTS12P58397 1594 aa17.9■□□□□ 0.46
SFSWAP-208ENST00000539506 ZNF608Q9ULD9 1512 aaPredicted RBP17.88■□□□□ 0.45
SFSWAP-208ENST00000539506 MRC2Q9UBG0 1479 aa17.88■□□□□ 0.45
SFSWAP-208ENST00000539506 ANP32EQ9BTT0 268 aa17.88■□□□□ 0.45
SFSWAP-208ENST00000539506 IQGAP2Q13576 1575 aa17.88■□□□□ 0.45
SFSWAP-208ENST00000539506 UACAQ9BZF9 1416 aa17.88■□□□□ 0.45
SFSWAP-208ENST00000539506 ARID3CA6NKF2 412 aa17.87■□□□□ 0.45
SFSWAP-208ENST00000539506 CDK13Q14004 1512 aaKnown RBP17.86■□□□□ 0.45
SFSWAP-208ENST00000539506 EPRSP07814 1512 aaKnown RBP17.85■□□□□ 0.45
SFSWAP-208ENST00000539506 CHIC2Q9UKJ5 165 aa17.84■□□□□ 0.45
SFSWAP-208ENST00000539506 RRP7BPQ9NSQ0 103 aa17.84■□□□□ 0.45
SFSWAP-208ENST00000539506 HECW1Q76N89 1606 aa17.82■□□□□ 0.44
SFSWAP-208ENST00000539506 TCOF1Q13428 1488 aaKnown RBP17.81■□□□□ 0.44
SFSWAP-208ENST00000539506 DENND4BO75064 1496 aaPredicted RBP17.81■□□□□ 0.44
SFSWAP-208ENST00000539506 WDR62O43379 1518 aa17.81■□□□□ 0.44
SFSWAP-208ENST00000539506 TONSLQ96HA7 1378 aa17.8■□□□□ 0.44
SFSWAP-208ENST00000539506 KDM5BQ9UGL1 1544 aa17.8■□□□□ 0.44
SFSWAP-208ENST00000539506 KDM6BO15054 1643 aa17.8■□□□□ 0.44
SFSWAP-208ENST00000539506 IRX6P78412 446 aaPredicted RBP17.78■□□□□ 0.44
SFSWAP-208ENST00000539506 IFT140Q96RY7 1462 aa17.76■□□□□ 0.43
SFSWAP-208ENST00000539506 DISP1Q96F81 1524 aa17.76■□□□□ 0.43
SFSWAP-208ENST00000539506 BCL11AQ9H165 835 aa17.74■□□□□ 0.43
SFSWAP-208ENST00000539506 KIAA0586Q9BVV6 1533 aa17.72■□□□□ 0.43
SFSWAP-208ENST00000539506 RBM19Q9Y4C8 960 aaKnown RBP17.72■□□□□ 0.43
SFSWAP-208ENST00000539506 GCC2Q8IWJ2 1684 aa17.71■□□□□ 0.43
SFSWAP-208ENST00000539506 MIA2Q96PC5 1412 aa17.71■□□□□ 0.43
SFSWAP-208ENST00000539506 KIAA0556O60303 1618 aa17.71■□□□□ 0.43
SFSWAP-208ENST00000539506 ZNF644Q9H582 1327 aaPredicted RBP17.7■□□□□ 0.42
SFSWAP-208ENST00000539506 NUP153P49790 1475 aaKnown RBP17.7■□□□□ 0.42
SFSWAP-208ENST00000539506 NEFLP07196 543 aa17.7■□□□□ 0.42
SFSWAP-208ENST00000539506 FOXD1Q16676 465 aa17.69■□□□□ 0.42
SFSWAP-208ENST00000539506 EIF4G3O43432 1585 aaKnown RBP17.68■□□□□ 0.42
SFSWAP-208ENST00000539506 GRIN2AQ12879 1464 aa17.68■□□□□ 0.42
SFSWAP-208ENST00000539506 AKNAQ7Z591 1439 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms