RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 KDM6BO15054 1643 aa11.31□□□□□ -0.6
PTPRB-203ENST00000538174 CUX1P39880 1505 aa11.31□□□□□ -0.6
PTPRB-203ENST00000538174 CHMP7Q8WUX9 453 aaPredicted RBP11.3□□□□□ -0.6
PTPRB-203ENST00000538174 FHAD1B1AJZ9 1412 aa11.29□□□□□ -0.6
PTPRB-203ENST00000538174 RAD54L2Q9Y4B4 1467 aa11.29□□□□□ -0.6
PTPRB-203ENST00000538174 BIVM-ERCC5R4GMW8 1640 aa11.26□□□□□ -0.61
PTPRB-203ENST00000538174 TOP2BQ02880 1626 aa11.25□□□□□ -0.61
PTPRB-203ENST00000538174 TDRD9Q8NDG6 1382 aaKnown RBP11.23□□□□□ -0.61
PTPRB-203ENST00000538174 RUSC2Q8N2Y8 1516 aa11.22□□□□□ -0.61
PTPRB-203ENST00000538174 KIAA0586Q9BVV6 1533 aa11.22□□□□□ -0.61
PTPRB-203ENST00000538174 UHRF1BP1LA0JNW5 1464 aa11.2□□□□□ -0.62
PTPRB-203ENST00000538174 ILDR1Q86SU0 546 aaPredicted RBP11.2□□□□□ -0.62
PTPRB-203ENST00000538174 ADCY10Q96PN6 1610 aa11.19□□□□□ -0.62
PTPRB-203ENST00000538174 EHMT2Q96KQ7 1210 aa11.17□□□□□ -0.62
PTPRB-203ENST00000538174 PPRC1Q5VV67 1664 aaKnown RBP11.17□□□□□ -0.62
PTPRB-203ENST00000538174 FBLN2P98095 1184 aa11.15□□□□□ -0.62
PTPRB-203ENST00000538174 PLB1Q6P1J6 1458 aa11.15□□□□□ -0.62
PTPRB-203ENST00000538174 TEX14Q8IWB6 1497 aa11.15□□□□□ -0.62
PTPRB-203ENST00000538174 MAP3K4Q9Y6R4 1608 aa11.14□□□□□ -0.63
PTPRB-203ENST00000538174 KDM4FA0A1W2PPD8 638 aa11.14□□□□□ -0.63
PTPRB-203ENST00000538174 WRNQ14191 1432 aaPredicted RBP eCLIP11.14□□□□□ -0.63
PTPRB-203ENST00000538174 HECW2Q9P2P5 1572 aa11.14□□□□□ -0.63
PTPRB-203ENST00000538174 PLPPR3Q6T4P5 718 aa11.12□□□□□ -0.63
PTPRB-203ENST00000538174 CUL7Q14999 1698 aa11.12□□□□□ -0.63
PTPRB-203ENST00000538174 ADGRL1O94910 1474 aa11.12□□□□□ -0.63
PTPRB-203ENST00000538174 NCBP3Q53F19 620 aaKnown RBP11.12□□□□□ -0.63
PTPRB-203ENST00000538174 PRG4Q92954 1404 aaPredicted RBP11.11□□□□□ -0.63
PTPRB-203ENST00000538174 FBXO41Q8TF61 875 aa11.09□□□□□ -0.63
PTPRB-203ENST00000538174 ABCC2Q92887 1545 aa11.07□□□□□ -0.64
PTPRB-203ENST00000538174 NPM1P06748 294 aaKnown RBP eCLIP11.06□□□□□ -0.64
PTPRB-203ENST00000538174 RTN4Q9NQC3 1192 aaKnown RBP11.05□□□□□ -0.64
PTPRB-203ENST00000538174 CFAP43Q8NDM7 1665 aa11.04□□□□□ -0.64
PTPRB-203ENST00000538174 PHLDB1Q86UU1 1377 aa11.03□□□□□ -0.64
PTPRB-203ENST00000538174 MAGI3Q5TCQ9 1506 aa11.03□□□□□ -0.64
PTPRB-203ENST00000538174 FAM69CQ0P6D2 419 aa11.02□□□□□ -0.65
PTPRB-203ENST00000538174 KDM5BQ9UGL1 1544 aa11.01□□□□□ -0.65
PTPRB-203ENST00000538174 JPH4Q96JJ6 628 aa10.99□□□□□ -0.65
PTPRB-203ENST00000538174 CHIC1Q5VXU3 224 aa10.98□□□□□ -0.65
PTPRB-203ENST00000538174 SUPT5HO00267 1087 aaKnown RBP10.98□□□□□ -0.65
PTPRB-203ENST00000538174 ADAMTSL3P82987 1691 aa10.98□□□□□ -0.65
PTPRB-203ENST00000538174 EPRSP07814 1512 aaKnown RBP10.97□□□□□ -0.65
PTPRB-203ENST00000538174 CARMIL2Q6F5E8 1435 aa10.96□□□□□ -0.66
PTPRB-203ENST00000538174 ARAP3Q8WWN8 1544 aa10.95□□□□□ -0.66
PTPRB-203ENST00000538174 TNIKQ9UKE5 1360 aa10.95□□□□□ -0.66
PTPRB-203ENST00000538174 TSPOAP1O95153 1857 aa10.94□□□□□ -0.66
PTPRB-203ENST00000538174 IQSEC2Q5JU85 1478 aa10.93□□□□□ -0.66
PTPRB-203ENST00000538174 ASXL2Q76L83 1435 aa10.93□□□□□ -0.66
PTPRB-203ENST00000538174 UGGT2Q9NYU1 1516 aa10.92□□□□□ -0.66
PTPRB-203ENST00000538174 UACAQ9BZF9 1416 aa10.9□□□□□ -0.67
PTPRB-203ENST00000538174 PTPRGP23470 1445 aa10.89□□□□□ -0.67
PTPRB-203ENST00000538174 ZCCHC11Q5TAX3 1644 aaKnown RBP10.89□□□□□ -0.67
PTPRB-203ENST00000538174 IQGAP2Q13576 1575 aa10.88□□□□□ -0.67
PTPRB-203ENST00000538174 PCF11O94913 1555 aaKnown RBP10.88□□□□□ -0.67
PTPRB-203ENST00000538174 WDR7Q9Y4E6 1490 aa10.86□□□□□ -0.67
PTPRB-203ENST00000538174 BCORL1Q5H9F3 1711 aa10.85□□□□□ -0.67
PTPRB-203ENST00000538174 COL17A1Q9UMD9 1497 aaPredicted RBP10.84□□□□□ -0.67
PTPRB-203ENST00000538174 NEO1Q92859 1461 aa10.82□□□□□ -0.68
PTPRB-203ENST00000538174 CFAP74Q9C0B2 1584 aa10.81□□□□□ -0.68
PTPRB-203ENST00000538174 KIF27Q86VH2 1401 aa10.81□□□□□ -0.68
PTPRB-203ENST00000538174 KIAA0556O60303 1618 aa10.8□□□□□ -0.68
PTPRB-203ENST00000538174 PTPRMP28827 1452 aa10.8□□□□□ -0.68
PTPRB-203ENST00000538174 LMTK3Q96Q04 1460 aa10.8□□□□□ -0.68
PTPRB-203ENST00000538174 ABCA9Q8IUA7 1624 aa10.8□□□□□ -0.68
PTPRB-203ENST00000538174 DISP1Q96F81 1524 aa10.8□□□□□ -0.68
PTPRB-203ENST00000538174 ABCA8O94911 1581 aa10.79□□□□□ -0.68
PTPRB-203ENST00000538174 SOCS7O14512 581 aa10.79□□□□□ -0.68
PTPRB-203ENST00000538174 GOLGA3Q08378 1498 aa10.78□□□□□ -0.68
PTPRB-203ENST00000538174 KIF21BO75037 1637 aa10.78□□□□□ -0.68
PTPRB-203ENST00000538174 ZMYM4Q5VZL5 1548 aa10.78□□□□□ -0.68
PTPRB-203ENST00000538174 ARHGEF40Q8TER5 1519 aa10.77□□□□□ -0.69
PTPRB-203ENST00000538174 IGF1RP08069 1367 aa10.77□□□□□ -0.69
PTPRB-203ENST00000538174 EIF5BO60841 1220 aaKnown RBP10.76□□□□□ -0.69
PTPRB-203ENST00000538174 ARXQ96QS3 562 aa10.75□□□□□ -0.69
PTPRB-203ENST00000538174 TTC37Q6PGP7 1564 aa10.75□□□□□ -0.69
PTPRB-203ENST00000538174 MAGI2Q86UL8 1455 aa10.75□□□□□ -0.69
PTPRB-203ENST00000538174 SPATA31D1Q6ZQQ2 1576 aa10.73□□□□□ -0.69
PTPRB-203ENST00000538174 CD109Q6YHK3 1445 aa10.72□□□□□ -0.69
PTPRB-203ENST00000538174 CTTNBP2Q8WZ74 1663 aa10.72□□□□□ -0.69
PTPRB-203ENST00000538174 PREX1Q8TCU6 1659 aa10.71□□□□□ -0.69
PTPRB-203ENST00000538174 FRMPD1Q5SYB0 1578 aa10.7□□□□□ -0.7
PTPRB-203ENST00000538174 PTPRTO14522 1441 aa10.69□□□□□ -0.7
PTPRB-203ENST00000538174 POGZQ7Z3K3 1410 aa10.69□□□□□ -0.7
PTPRB-203ENST00000538174 REREQ9P2R6 1566 aa10.69□□□□□ -0.7
PTPRB-203ENST00000538174 EFCAB5A4FU69 1503 aa10.69□□□□□ -0.7
PTPRB-203ENST00000538174 TIMELESSQ9UNS1 1208 aa10.69□□□□□ -0.7
PTPRB-203ENST00000538174 MADDQ8WXG6 1647 aa10.68□□□□□ -0.7
PTPRB-203ENST00000538174 FHOD3Q2V2M9 1422 aa10.67□□□□□ -0.7
PTPRB-203ENST00000538174 FANCAO15360 1455 aa10.67□□□□□ -0.7
PTPRB-203ENST00000538174 CARMIL1Q5VZK9 1371 aa10.67□□□□□ -0.7
PTPRB-203ENST00000538174 RICTORQ6R327 1708 aa10.66□□□□□ -0.7
PTPRB-203ENST00000538174 RAPGEF2Q9Y4G8 1499 aa10.63□□□□□ -0.71
PTPRB-203ENST00000538174 DMRT2Q9Y5R5 561 aa10.63□□□□□ -0.71
PTPRB-203ENST00000538174 ARHGEF12Q9NZN5 1544 aa10.63□□□□□ -0.71
PTPRB-203ENST00000538174 AMER1Q5JTC6 1135 aaPredicted RBP10.63□□□□□ -0.71
PTPRB-203ENST00000538174 CERKQ8TCT0 537 aa10.63□□□□□ -0.71
PTPRB-203ENST00000538174 RIMS1Q86UR5 1692 aaKnown RBP10.63□□□□□ -0.71
PTPRB-203ENST00000538174 AKNAQ7Z591 1439 aa10.61□□□□□ -0.71
PTPRB-203ENST00000538174 EEA1Q15075 1411 aa10.6□□□□□ -0.71
PTPRB-203ENST00000538174 FER1L4A9Z1Z3 1794 aa10.59□□□□□ -0.71
PTPRB-203ENST00000538174 YEATS2Q9ULM3 1422 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms