RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 MYT1LQ9UL68 1186 aa15.06■□□□□ 0
RTN3-208ENST00000537981 DHX57Q6P158 1386 aaKnown RBP15.05■□□□□ 0
RTN3-208ENST00000537981 ERICH6BQ5W0A0 696 aa15.05■□□□□ 0
RTN3-208ENST00000537981 CDK11AQ9UQ88 783 aaPredicted RBP15.05■□□□□ -0
RTN3-208ENST00000537981 ABCC8Q09428 1581 aa15.05■□□□□ -0
RTN3-208ENST00000537981 BAZ1AQ9NRL2 1556 aaPredicted RBP15.04■□□□□ -0
RTN3-208ENST00000537981 DDX10Q13206 875 aaKnown RBP15.03■□□□□ -0
RTN3-208ENST00000537981 ADRA2BP18089 450 aa15.02□□□□□ -0.01
RTN3-208ENST00000537981 NPM2Q86SE8 214 aaKnown RBP15.01□□□□□ -0.01
RTN3-208ENST00000537981 ATAD2BQ9ULI0 1458 aa15□□□□□ -0.01
RTN3-208ENST00000537981 UBTFP17480 764 aaKnown RBP14.99□□□□□ -0.01
RTN3-208ENST00000537981 NOP58Q9Y2X3 529 aaKnown RBP14.99□□□□□ -0.01
RTN3-208ENST00000537981 SOGA1O94964 1423 aa14.98□□□□□ -0.01
RTN3-208ENST00000537981 TMEM132AQ24JP5 1023 aa14.98□□□□□ -0.01
RTN3-208ENST00000537981 CCDC88BA6NC98 1476 aa14.98□□□□□ -0.01
RTN3-208ENST00000537981 TNIKQ9UKE5 1360 aa14.97□□□□□ -0.01
RTN3-208ENST00000537981 HIRIP3Q9BW71 556 aaPredicted RBP14.96□□□□□ -0.02
RTN3-208ENST00000537981 RUSC2Q8N2Y8 1516 aa14.94□□□□□ -0.02
RTN3-208ENST00000537981 WIZO95785 1651 aa14.92□□□□□ -0.02
RTN3-208ENST00000537981 NCAPD3P42695 1498 aa14.91□□□□□ -0.02
RTN3-208ENST00000537981 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
RTN3-208ENST00000537981 BAZ1BQ9UIG0 1483 aaKnown RBP14.9□□□□□ -0.02
RTN3-208ENST00000537981 PKNOX2Q96KN3 472 aa14.89□□□□□ -0.03
RTN3-208ENST00000537981 B4GALNT3Q6L9W6 998 aa14.89□□□□□ -0.03
RTN3-208ENST00000537981 C14orf37Q86TY3 774 aa14.87□□□□□ -0.03
RTN3-208ENST00000537981 PLEKHG5O94827 1062 aa14.85□□□□□ -0.03
RTN3-208ENST00000537981 PPP1R15AO75807 674 aaPredicted RBP14.83□□□□□ -0.04
RTN3-208ENST00000537981 BRPF3Q9ULD4 1205 aa14.83□□□□□ -0.04
RTN3-208ENST00000537981 RTL5Q5HYW3 569 aaPredicted RBP14.83□□□□□ -0.04
RTN3-208ENST00000537981 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
RTN3-208ENST00000537981 KDM2AQ9Y2K7 1162 aa14.8□□□□□ -0.04
RTN3-208ENST00000537981 HMGXB3Q12766 1538 aa14.79□□□□□ -0.04
RTN3-208ENST00000537981 HNRNPUQ00839 825 aaKnown RBP eCLIP14.79□□□□□ -0.04
RTN3-208ENST00000537981 VSIG10Q8N0Z9 540 aa14.78□□□□□ -0.04
RTN3-208ENST00000537981 CLIP1P30622 1438 aa14.78□□□□□ -0.04
RTN3-208ENST00000537981 WDR97A6NE52 1622 aa14.78□□□□□ -0.04
RTN3-208ENST00000537981 SIN3AQ96ST3 1273 aa14.75□□□□□ -0.05
RTN3-208ENST00000537981 PPP4R2Q9NY27 417 aa14.75□□□□□ -0.05
RTN3-208ENST00000537981 LAS1LQ9Y4W2 734 aaKnown RBP14.74□□□□□ -0.05
RTN3-208ENST00000537981 WASHC2AQ641Q2 1341 aa14.74□□□□□ -0.05
RTN3-208ENST00000537981 ANP32CO43423 234 aa14.72□□□□□ -0.05
RTN3-208ENST00000537981 IPO9Q96P70 1041 aaKnown RBP14.72□□□□□ -0.05
RTN3-208ENST00000537981 CCER2I3L3R5 266 aa14.72□□□□□ -0.05
RTN3-208ENST00000537981 GOLGA3Q08378 1498 aa14.71□□□□□ -0.05
RTN3-208ENST00000537981 NESP48681 1621 aa14.7□□□□□ -0.06
RTN3-208ENST00000537981 VPS8Q8N3P4 1428 aa14.7□□□□□ -0.06
RTN3-208ENST00000537981 FBLN2P98095 1184 aa14.69□□□□□ -0.06
RTN3-208ENST00000537981 MAPKBP1O60336 1514 aa14.69□□□□□ -0.06
RTN3-208ENST00000537981 ZBTB47Q9UFB7 747 aaPredicted RBP14.69□□□□□ -0.06
RTN3-208ENST00000537981 NEFMP07197 916 aa14.67□□□□□ -0.06
RTN3-208ENST00000537981 TOP2AP11388 1531 aaKnown RBP14.67□□□□□ -0.06
RTN3-208ENST00000537981 KANK4Q5T7N3 995 aaPredicted RBP14.66□□□□□ -0.06
RTN3-208ENST00000537981 FBXO3Q9UK99 471 aa14.65□□□□□ -0.06
RTN3-208ENST00000537981 WASHC2CQ9Y4E1 1318 aa14.64□□□□□ -0.07
RTN3-208ENST00000537981 ANP32AP39687 249 aaKnown RBP14.64□□□□□ -0.07
RTN3-208ENST00000537981 C11orf95C9JLR9 678 aaPredicted RBP14.64□□□□□ -0.07
RTN3-208ENST00000537981 CCDC184Q52MB2 194 aa14.62□□□□□ -0.07
RTN3-208ENST00000537981 ZMYND15Q9H091 742 aa14.6□□□□□ -0.07
RTN3-208ENST00000537981 NPM3O75607 178 aaKnown RBP14.57□□□□□ -0.08
RTN3-208ENST00000537981 RAB3GAP2Q9H2M9 1393 aa14.56□□□□□ -0.08
RTN3-208ENST00000537981 KIF21BO75037 1637 aa14.56□□□□□ -0.08
RTN3-208ENST00000537981 CADPSQ9ULU8 1353 aa14.56□□□□□ -0.08
RTN3-208ENST00000537981 ERCC6Q03468 1493 aa14.56□□□□□ -0.08
RTN3-208ENST00000537981 SENP3-EIF4A1A0A087X0R7 540 aa14.53□□□□□ -0.08
RTN3-208ENST00000537981 EEA1Q15075 1411 aa14.51□□□□□ -0.09
RTN3-208ENST00000537981 FRAT1Q92837 279 aaPredicted RBP14.51□□□□□ -0.09
RTN3-208ENST00000537981 CUX2O14529 1486 aa14.5□□□□□ -0.09
RTN3-208ENST00000537981 AKNAQ7Z591 1439 aa14.5□□□□□ -0.09
RTN3-208ENST00000537981 RAPGEF2Q9Y4G8 1499 aa14.49□□□□□ -0.09
RTN3-208ENST00000537981 DCAF11Q8TEB1 546 aa14.49□□□□□ -0.09
RTN3-208ENST00000537981 GSE1Q14687 1217 aa14.48□□□□□ -0.09
RTN3-208ENST00000537981 CEP164Q9UPV0 1460 aa14.48□□□□□ -0.09
RTN3-208ENST00000537981 FAM9BQ8IZU0 186 aa14.48□□□□□ -0.09
RTN3-208ENST00000537981 RRBP1Q9P2E9 1410 aaKnown RBP14.48□□□□□ -0.09
RTN3-208ENST00000537981 LAMC3Q9Y6N6 1575 aa14.47□□□□□ -0.09
RTN3-208ENST00000537981 RSPH6AQ9H0K4 717 aa14.46□□□□□ -0.1
RTN3-208ENST00000537981 CFTRP13569 1480 aa14.45□□□□□ -0.1
RTN3-208ENST00000537981 PDS5BQ9NTI5 1447 aa14.44□□□□□ -0.1
RTN3-208ENST00000537981 USP35Q9P2H5 1018 aa14.43□□□□□ -0.1
RTN3-208ENST00000537981 CCNB3Q8WWL7 1395 aa14.43□□□□□ -0.1
RTN3-208ENST00000537981 SLC4A3P48751 1232 aa14.43□□□□□ -0.1
RTN3-208ENST00000537981 FANCD2Q9BXW9 1451 aa14.4□□□□□ -0.1
RTN3-208ENST00000537981 KIF21AQ7Z4S6 1674 aa14.4□□□□□ -0.1
RTN3-208ENST00000537981 SKAP1Q86WV1 359 aa14.4□□□□□ -0.1
RTN3-208ENST00000537981 NFKBIBQ15653 356 aa14.4□□□□□ -0.1
RTN3-208ENST00000537981 ARAP1Q96P48 1450 aa14.38□□□□□ -0.11
RTN3-208ENST00000537981 RRAGDQ9NQL2 400 aaPredicted RBP14.38□□□□□ -0.11
RTN3-208ENST00000537981 FAM43AQ8N2R8 423 aa14.35□□□□□ -0.11
RTN3-208ENST00000537981 A0A0U1RQG5 324 aaPredicted RBP14.35□□□□□ -0.11
RTN3-208ENST00000537981 PDE4AP27815 886 aa14.34□□□□□ -0.11
RTN3-208ENST00000537981 ZBED9Q6R2W3 1325 aa14.34□□□□□ -0.11
RTN3-208ENST00000537981 PPM1GO15355 546 aaPredicted RBP14.34□□□□□ -0.11
RTN3-208ENST00000537981 SETD5Q9C0A6 1442 aa14.32□□□□□ -0.12
RTN3-208ENST00000537981 CNGB1Q14028 1251 aaPredicted RBP14.32□□□□□ -0.12
RTN3-208ENST00000537981 GLIPR1L2Q4G1C9 344 aa14.32□□□□□ -0.12
RTN3-208ENST00000537981 SYNJ1O43426 1573 aa14.32□□□□□ -0.12
RTN3-208ENST00000537981 MRS2Q9HD23 443 aa14.31□□□□□ -0.12
RTN3-208ENST00000537981 FRAT2O75474 233 aaPredicted RBP14.29□□□□□ -0.12
RTN3-208ENST00000537981 BACH2Q9BYV9 841 aa14.29□□□□□ -0.12
RTN3-208ENST00000537981 PPP6R1Q9UPN7 881 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms