RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 JPH4Q96JJ6 628 aa24.21■■□□□ 1.47
SYNE1-235ENST00000537033 IGF1RP08069 1367 aa24.17■■□□□ 1.46
SYNE1-235ENST00000537033 KIAA0586Q9BVV6 1533 aa24.13■■□□□ 1.45
SYNE1-235ENST00000537033 CARMIL1Q5VZK9 1371 aa24.06■■□□□ 1.44
SYNE1-235ENST00000537033 KIF13AQ9H1H9 1805 aa24.01■■□□□ 1.43
SYNE1-235ENST00000537033 NPM1P06748 294 aaKnown RBP eCLIP23.99■■□□□ 1.43
SYNE1-235ENST00000537033 ADCY10Q96PN6 1610 aa23.99■■□□□ 1.43
SYNE1-235ENST00000537033 IQGAP2Q13576 1575 aa23.96■■□□□ 1.43
SYNE1-235ENST00000537033 MAPKBP1O60336 1514 aa23.95■■□□□ 1.43
SYNE1-235ENST00000537033 CARMIL2Q6F5E8 1435 aa23.93■■□□□ 1.42
SYNE1-235ENST00000537033 ABCC10Q5T3U5 1492 aa23.88■■□□□ 1.41
SYNE1-235ENST00000537033 RAPGEF2Q9Y4G8 1499 aa23.88■■□□□ 1.41
SYNE1-235ENST00000537033 PTPRGP23470 1445 aa23.88■■□□□ 1.41
SYNE1-235ENST00000537033 DIP2BQ9P265 1576 aa23.86■■□□□ 1.41
SYNE1-235ENST00000537033 TNIKQ9UKE5 1360 aa23.85■■□□□ 1.41
SYNE1-235ENST00000537033 FAM69CQ0P6D2 419 aa23.84■■□□□ 1.41
SYNE1-235ENST00000537033 TTBK1Q5TCY1 1321 aaPredicted RBP23.84■■□□□ 1.41
SYNE1-235ENST00000537033 UGGT2Q9NYU1 1516 aa23.78■■□□□ 1.4
SYNE1-235ENST00000537033 CTTNBP2Q8WZ74 1663 aa23.77■■□□□ 1.4
SYNE1-235ENST00000537033 ABCC2Q92887 1545 aa23.77■■□□□ 1.4
SYNE1-235ENST00000537033 DISP1Q96F81 1524 aa23.77■■□□□ 1.4
SYNE1-235ENST00000537033 AEBP2Q6ZN18 517 aaPredicted RBP23.76■■□□□ 1.39
SYNE1-235ENST00000537033 UHRF1BP1LA0JNW5 1464 aa23.73■■□□□ 1.39
SYNE1-235ENST00000537033 KIAA0556O60303 1618 aa23.73■■□□□ 1.39
SYNE1-235ENST00000537033 TSPOAP1O95153 1857 aa23.72■■□□□ 1.39
SYNE1-235ENST00000537033 UACAQ9BZF9 1416 aa23.71■■□□□ 1.39
SYNE1-235ENST00000537033 PLB1Q6P1J6 1458 aa23.67■■□□□ 1.38
SYNE1-235ENST00000537033 KDM6BO15054 1643 aa23.66■■□□□ 1.38
SYNE1-235ENST00000537033 ASXL2Q76L83 1435 aa23.66■■□□□ 1.38
SYNE1-235ENST00000537033 GOLGA3Q08378 1498 aa23.63■■□□□ 1.37
SYNE1-235ENST00000537033 PRXQ9BXM0 1461 aa23.62■■□□□ 1.37
SYNE1-235ENST00000537033 KDM5BQ9UGL1 1544 aa23.61■■□□□ 1.37
SYNE1-235ENST00000537033 ZCCHC11Q5TAX3 1644 aaKnown RBP23.61■■□□□ 1.37
SYNE1-235ENST00000537033 GLI2P10070 1586 aa23.61■■□□□ 1.37
SYNE1-235ENST00000537033 PPRC1Q5VV67 1664 aaKnown RBP23.52■■□□□ 1.36
SYNE1-235ENST00000537033 EPRSP07814 1512 aaKnown RBP23.52■■□□□ 1.36
SYNE1-235ENST00000537033 MAP3K4Q9Y6R4 1608 aa23.5■■□□□ 1.35
SYNE1-235ENST00000537033 ABCA8O94911 1581 aa23.48■■□□□ 1.35
SYNE1-235ENST00000537033 WDR7Q9Y4E6 1490 aa23.47■■□□□ 1.35
SYNE1-235ENST00000537033 FAM9AQ8IZU1 332 aaPredicted RBP23.46■■□□□ 1.35
SYNE1-235ENST00000537033 TEX14Q8IWB6 1497 aa23.45■■□□□ 1.34
SYNE1-235ENST00000537033 CSRNP3Q8WYN3 585 aa23.45■■□□□ 1.34
SYNE1-235ENST00000537033 EEA1Q15075 1411 aa23.44■■□□□ 1.34
SYNE1-235ENST00000537033 SAMD9Q5K651 1589 aa23.37■■□□□ 1.33
SYNE1-235ENST00000537033 CFAP43Q8NDM7 1665 aa23.37■■□□□ 1.33
SYNE1-235ENST00000537033 P3H3Q8IVL6 736 aa23.34■■□□□ 1.33
SYNE1-235ENST00000537033 KCNH8Q96L42 1107 aa23.3■■□□□ 1.32
SYNE1-235ENST00000537033 CD109Q6YHK3 1445 aa23.3■■□□□ 1.32
SYNE1-235ENST00000537033 RAPGEF6Q8TEU7 1601 aa23.29■■□□□ 1.32
SYNE1-235ENST00000537033 COL17A1Q9UMD9 1497 aaPredicted RBP23.28■■□□□ 1.32
SYNE1-235ENST00000537033 MAGI3Q5TCQ9 1506 aa23.28■■□□□ 1.32
SYNE1-235ENST00000537033 KIF21BO75037 1637 aa23.26■■□□□ 1.31
SYNE1-235ENST00000537033 ATP10BO94823 1461 aa23.25■■□□□ 1.31
SYNE1-235ENST00000537033 KDM4FA0A1W2PPD8 638 aa23.25■■□□□ 1.31
SYNE1-235ENST00000537033 ARID3CA6NKF2 412 aa23.25■■□□□ 1.31
SYNE1-235ENST00000537033 RANGAP1P46060 587 aaPredicted RBP23.21■■□□□ 1.31
SYNE1-235ENST00000537033 EFCAB5A4FU69 1503 aa23.19■■□□□ 1.3
SYNE1-235ENST00000537033 ADGRL1O94910 1474 aa23.18■■□□□ 1.3
SYNE1-235ENST00000537033 FHOD3Q2V2M9 1422 aa23.18■■□□□ 1.3
SYNE1-235ENST00000537033 ABCA9Q8IUA7 1624 aa23.18■■□□□ 1.3
SYNE1-235ENST00000537033 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.17■■□□□ 1.3
SYNE1-235ENST00000537033 HNRNPUL2Q1KMD3 747 aaKnown RBP23.17■■□□□ 1.3
SYNE1-235ENST00000537033 NUP153P49790 1475 aaKnown RBP23.15■■□□□ 1.3
SYNE1-235ENST00000537033 ARAP3Q8WWN8 1544 aa23.1■■□□□ 1.29
SYNE1-235ENST00000537033 PHLDB1Q86UU1 1377 aa23.07■■□□□ 1.28
SYNE1-235ENST00000537033 CHIC1Q5VXU3 224 aa23.06■■□□□ 1.28
SYNE1-235ENST00000537033 UBTFP17480 764 aaKnown RBP23.04■■□□□ 1.28
SYNE1-235ENST00000537033 NEO1Q92859 1461 aa23.04■■□□□ 1.28
SYNE1-235ENST00000537033 PLEKHD1A6NEE1 506 aa23.02■■□□□ 1.28
SYNE1-235ENST00000537033 EHMT2Q96KQ7 1210 aa23.01■■□□□ 1.27
SYNE1-235ENST00000537033 CFAP74Q9C0B2 1584 aa22.98■■□□□ 1.27
SYNE1-235ENST00000537033 FMN1Q68DA7 1419 aa22.97■■□□□ 1.27
SYNE1-235ENST00000537033 HECW1Q76N89 1606 aa22.96■■□□□ 1.27
SYNE1-235ENST00000537033 CDK13Q14004 1512 aaKnown RBP22.94■■□□□ 1.26
SYNE1-235ENST00000537033 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.93■■□□□ 1.26
SYNE1-235ENST00000537033 TTC37Q6PGP7 1564 aa22.93■■□□□ 1.26
SYNE1-235ENST00000537033 ARHGAP35Q9NRY4 1499 aa22.92■■□□□ 1.26
SYNE1-235ENST00000537033 FRMPD1Q5SYB0 1578 aa22.92■■□□□ 1.26
SYNE1-235ENST00000537033 RAPGEF3O95398 923 aa22.91■■□□□ 1.26
SYNE1-235ENST00000537033 FANCAO15360 1455 aa22.9■■□□□ 1.26
SYNE1-235ENST00000537033 ATP1B4Q9UN42 357 aaPredicted RBP22.89■■□□□ 1.25
SYNE1-235ENST00000537033 RICTORQ6R327 1708 aa22.87■■□□□ 1.25
SYNE1-235ENST00000537033 DENND4BO75064 1496 aaPredicted RBP22.86■■□□□ 1.25
SYNE1-235ENST00000537033 AKNAQ7Z591 1439 aa22.86■■□□□ 1.25
SYNE1-235ENST00000537033 HECW2Q9P2P5 1572 aa22.85■■□□□ 1.25
SYNE1-235ENST00000537033 ARHGEF40Q8TER5 1519 aa22.84■■□□□ 1.25
SYNE1-235ENST00000537033 CDK11AQ9UQ88 783 aaPredicted RBP22.83■■□□□ 1.25
SYNE1-235ENST00000537033 MYO5CQ9NQX4 1742 aa22.82■■□□□ 1.24
SYNE1-235ENST00000537033 KIF14Q15058 1648 aa22.81■■□□□ 1.24
SYNE1-235ENST00000537033 ADAMTSL3P82987 1691 aa22.81■■□□□ 1.24
SYNE1-235ENST00000537033 BCORL1Q5H9F3 1711 aa22.79■■□□□ 1.24
SYNE1-235ENST00000537033 ZMYM4Q5VZL5 1548 aa22.78■■□□□ 1.24
SYNE1-235ENST00000537033 ARID4BQ4LE39 1312 aaPredicted RBP22.78■■□□□ 1.24
SYNE1-235ENST00000537033 PLCH2O75038 1416 aa22.77■■□□□ 1.24
SYNE1-235ENST00000537033 LRRIQ1Q96JM4 1722 aa22.77■■□□□ 1.23
SYNE1-235ENST00000537033 CLIP1P30622 1438 aa22.76■■□□□ 1.23
SYNE1-235ENST00000537033 ZFYVE16Q7Z3T8 1539 aa22.75■■□□□ 1.23
SYNE1-235ENST00000537033 TROQ12816 1431 aaPredicted RBP22.74■■□□□ 1.23
SYNE1-235ENST00000537033 PCF11O94913 1555 aaKnown RBP22.73■■□□□ 1.23
SYNE1-235ENST00000537033 MADDQ8WXG6 1647 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms