RNA–Protein interactions for RNA: ENST00000536688.5

RFX4-204, Transcript of regulatory factor X4, humanhuman

TSL 1 (best)

Gene RFX4, Length 2,186 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-204ENST00000536688 IPO9Q96P70 1041 aaKnown RBP14.01□□□□□ -0.17
RFX4-204ENST00000536688 KIF21BO75037 1637 aa14.01□□□□□ -0.17
RFX4-204ENST00000536688 PAK3O75914 559 aaPredicted RBP14□□□□□ -0.17
RFX4-204ENST00000536688 CEP164Q9UPV0 1460 aa14□□□□□ -0.17
RFX4-204ENST00000536688 ANP32CO43423 234 aa13.99□□□□□ -0.17
RFX4-204ENST00000536688 UBTFP17480 764 aaKnown RBP13.99□□□□□ -0.17
RFX4-204ENST00000536688 TRIM52Q96A61 297 aa13.99□□□□□ -0.17
RFX4-204ENST00000536688 DAXXQ9UER7 740 aaPredicted RBP13.98□□□□□ -0.17
RFX4-204ENST00000536688 SOGA1O94964 1423 aa13.98□□□□□ -0.17
RFX4-204ENST00000536688 ANP32AP39687 249 aaKnown RBP13.98□□□□□ -0.17
RFX4-204ENST00000536688 RSPH6AQ9H0K4 717 aa13.98□□□□□ -0.17
RFX4-204ENST00000536688 GLIPR1L2Q4G1C9 344 aa13.96□□□□□ -0.18
RFX4-204ENST00000536688 TIMELESSQ9UNS1 1208 aa13.96□□□□□ -0.18
RFX4-204ENST00000536688 BAZ1BQ9UIG0 1483 aaKnown RBP13.96□□□□□ -0.18
RFX4-204ENST00000536688 DDX10Q13206 875 aaKnown RBP13.95□□□□□ -0.18
RFX4-204ENST00000536688 ZBTB47Q9UFB7 747 aaPredicted RBP13.95□□□□□ -0.18
RFX4-204ENST00000536688 SMARCA4P51532 1647 aa13.94□□□□□ -0.18
RFX4-204ENST00000536688 RRBP1Q9P2E9 1410 aaKnown RBP13.94□□□□□ -0.18
RFX4-204ENST00000536688 RTN4Q9NQC3 1192 aaKnown RBP13.93□□□□□ -0.18
RFX4-204ENST00000536688 MAPKBP1O60336 1514 aa13.89□□□□□ -0.19
RFX4-204ENST00000536688 SMARCA2P51531 1590 aa13.88□□□□□ -0.19
RFX4-204ENST00000536688 ATAD2BQ9ULI0 1458 aa13.87□□□□□ -0.19
RFX4-204ENST00000536688 WDR97A6NE52 1622 aa13.86□□□□□ -0.19
RFX4-204ENST00000536688 PPM1GO15355 546 aaPredicted RBP13.85□□□□□ -0.19
RFX4-204ENST00000536688 NCAPD3P42695 1498 aa13.84□□□□□ -0.19
RFX4-204ENST00000536688 RUSC2Q8N2Y8 1516 aa13.83□□□□□ -0.2
RFX4-204ENST00000536688 HNRNPUQ00839 825 aaKnown RBP eCLIP13.82□□□□□ -0.2
RFX4-204ENST00000536688 TOP2AP11388 1531 aaKnown RBP13.82□□□□□ -0.2
RFX4-204ENST00000536688 IRX6P78412 446 aaPredicted RBP13.81□□□□□ -0.2
RFX4-204ENST00000536688 FAM43AQ8N2R8 423 aa13.81□□□□□ -0.2
RFX4-204ENST00000536688 NEFMP07197 916 aa13.79□□□□□ -0.2
RFX4-204ENST00000536688 B4GALNT3Q6L9W6 998 aa13.78□□□□□ -0.2
RFX4-204ENST00000536688 PODXL2Q9NZ53 605 aa13.77□□□□□ -0.21
RFX4-204ENST00000536688 GSE1Q14687 1217 aa13.76□□□□□ -0.21
RFX4-204ENST00000536688 HMGXB3Q12766 1538 aa13.75□□□□□ -0.21
RFX4-204ENST00000536688 CCNB3Q8WWL7 1395 aa13.75□□□□□ -0.21
RFX4-204ENST00000536688 PEG3Q9GZU2 1588 aa13.75□□□□□ -0.21
RFX4-204ENST00000536688 BRPF3Q9ULD4 1205 aa13.75□□□□□ -0.21
RFX4-204ENST00000536688 ZMYND15Q9H091 742 aa13.73□□□□□ -0.21
RFX4-204ENST00000536688 RAB3GAP2Q9H2M9 1393 aa13.73□□□□□ -0.21
RFX4-204ENST00000536688 ZBED9Q6R2W3 1325 aa13.72□□□□□ -0.21
RFX4-204ENST00000536688 RNF123Q5XPI4 1314 aa13.7□□□□□ -0.22
RFX4-204ENST00000536688 SYNJ1O43426 1573 aa13.7□□□□□ -0.22
RFX4-204ENST00000536688 AEBP2Q6ZN18 517 aaPredicted RBP13.69□□□□□ -0.22
RFX4-204ENST00000536688 SETD5Q9C0A6 1442 aa13.68□□□□□ -0.22
RFX4-204ENST00000536688 RRP9O43818 475 aaKnown RBP13.65□□□□□ -0.22
RFX4-204ENST00000536688 SMG6Q86US8 1419 aaKnown RBP13.65□□□□□ -0.22
RFX4-204ENST00000536688 TCERG1O14776 1098 aaKnown RBP13.64□□□□□ -0.23
RFX4-204ENST00000536688 VSIG10Q8N0Z9 540 aa13.64□□□□□ -0.23
RFX4-204ENST00000536688 DDRGK1Q96HY6 314 aa13.64□□□□□ -0.23
RFX4-204ENST00000536688 ARAP1Q96P48 1450 aa13.63□□□□□ -0.23
RFX4-204ENST00000536688 MS4A1P11836 297 aa13.63□□□□□ -0.23
RFX4-204ENST00000536688 FHAD1B1AJZ9 1412 aa13.63□□□□□ -0.23
RFX4-204ENST00000536688 RAPGEF2Q9Y4G8 1499 aa13.63□□□□□ -0.23
RFX4-204ENST00000536688 ERICH3Q5RHP9 1530 aa13.62□□□□□ -0.23
RFX4-204ENST00000536688 PLEKHG5O94827 1062 aa13.62□□□□□ -0.23
RFX4-204ENST00000536688 NESP48681 1621 aa13.61□□□□□ -0.23
RFX4-204ENST00000536688 LAS1LQ9Y4W2 734 aaKnown RBP13.61□□□□□ -0.23
RFX4-204ENST00000536688 NCOA2Q15596 1464 aa13.6□□□□□ -0.23
RFX4-204ENST00000536688 MAP3K1Q13233 1512 aa13.59□□□□□ -0.23
RFX4-204ENST00000536688 KANK4Q5T7N3 995 aaPredicted RBP13.59□□□□□ -0.23
RFX4-204ENST00000536688 FRAT1Q92837 279 aaPredicted RBP13.58□□□□□ -0.24
RFX4-204ENST00000536688 NFKBIBQ15653 356 aa13.56□□□□□ -0.24
RFX4-204ENST00000536688 BACH2Q9BYV9 841 aa13.56□□□□□ -0.24
RFX4-204ENST00000536688 HSP90AA2PQ14568 343 aaPredicted RBP13.55□□□□□ -0.24
RFX4-204ENST00000536688 SIN3AQ96ST3 1273 aa13.55□□□□□ -0.24
RFX4-204ENST00000536688 CNTLNQ9NXG0 1405 aa13.54□□□□□ -0.24
RFX4-204ENST00000536688 PDE4AP27815 886 aa13.54□□□□□ -0.24
RFX4-204ENST00000536688 NUDCQ9Y266 331 aa13.52□□□□□ -0.25
RFX4-204ENST00000536688 ERCC6Q03468 1493 aa13.51□□□□□ -0.25
RFX4-204ENST00000536688 TONSLQ96HA7 1378 aa13.5□□□□□ -0.25
RFX4-204ENST00000536688 HSP90AA1P07900 732 aaKnown RBP13.49□□□□□ -0.25
RFX4-204ENST00000536688 HIRIP3Q9BW71 556 aaPredicted RBP13.49□□□□□ -0.25
RFX4-204ENST00000536688 CENPJQ9HC77 1338 aaPredicted RBP13.49□□□□□ -0.25
RFX4-204ENST00000536688 AKNAQ7Z591 1439 aa13.47□□□□□ -0.25
RFX4-204ENST00000536688 NPM2Q86SE8 214 aaKnown RBP13.47□□□□□ -0.25
RFX4-204ENST00000536688 PRKRIP1Q9H875 184 aaPredicted RBP13.47□□□□□ -0.25
RFX4-204ENST00000536688 PRXQ9BXM0 1461 aa13.47□□□□□ -0.25
RFX4-204ENST00000536688 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.46□□□□□ -0.25
RFX4-204ENST00000536688 LAMC3Q9Y6N6 1575 aa13.46□□□□□ -0.25
RFX4-204ENST00000536688 DCAF11Q8TEB1 546 aa13.46□□□□□ -0.25
RFX4-204ENST00000536688 L1TD1Q5T7N2 865 aaKnown RBP13.45□□□□□ -0.26
RFX4-204ENST00000536688 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
RFX4-204ENST00000536688 ABCA5Q8WWZ7 1642 aa13.44□□□□□ -0.26
RFX4-204ENST00000536688 CLCN1P35523 988 aa13.44□□□□□ -0.26
RFX4-204ENST00000536688 MRS2Q9HD23 443 aa13.44□□□□□ -0.26
RFX4-204ENST00000536688 RRAGDQ9NQL2 400 aaPredicted RBP13.43□□□□□ -0.26
RFX4-204ENST00000536688 TIAM1Q13009 1591 aa13.43□□□□□ -0.26
RFX4-204ENST00000536688 KDM5BQ9UGL1 1544 aa13.43□□□□□ -0.26
RFX4-204ENST00000536688 KIF21AQ7Z4S6 1674 aa13.41□□□□□ -0.26
RFX4-204ENST00000536688 CCDC184Q52MB2 194 aa13.41□□□□□ -0.26
RFX4-204ENST00000536688 FAM9BQ8IZU0 186 aa13.41□□□□□ -0.26
RFX4-204ENST00000536688 PNNQ9H307 717 aaKnown RBP13.41□□□□□ -0.26
RFX4-204ENST00000536688 CALD1Q05682 793 aaKnown RBP13.41□□□□□ -0.26
RFX4-204ENST00000536688 POLR1AO95602 1720 aaPredicted RBP13.39□□□□□ -0.27
RFX4-204ENST00000536688 NCOA1Q15788 1441 aa13.39□□□□□ -0.27
RFX4-204ENST00000536688 AAMPQ13685 434 aa13.39□□□□□ -0.27
RFX4-204ENST00000536688 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
RFX4-204ENST00000536688 FGD1P98174 961 aa13.38□□□□□ -0.27
RFX4-204ENST00000536688 NAP1L5Q96NT1 182 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms