RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-206ENST00000536429 SHROOM2Q13796 1616 aa22.37■■□□□ 1.17
PRKDC-206ENST00000536429 PRG4Q92954 1404 aaPredicted RBP22.33■■□□□ 1.17
PRKDC-206ENST00000536429 KIAA0586Q9BVV6 1533 aa22.31■■□□□ 1.16
PRKDC-206ENST00000536429 RAPGEF2Q9Y4G8 1499 aa22.27■■□□□ 1.16
PRKDC-206ENST00000536429 CHIC1Q5VXU3 224 aa22.22■■□□□ 1.15
PRKDC-206ENST00000536429 PRXQ9BXM0 1461 aa22.2■■□□□ 1.14
PRKDC-206ENST00000536429 CSRNP3Q8WYN3 585 aa22.15■■□□□ 1.14
PRKDC-206ENST00000536429 IQGAP2Q13576 1575 aa22.14■■□□□ 1.13
PRKDC-206ENST00000536429 FAM9AQ8IZU1 332 aaPredicted RBP22.12■■□□□ 1.13
PRKDC-206ENST00000536429 TRHP20396 242 aaPredicted RBP22.1■■□□□ 1.13
PRKDC-206ENST00000536429 TTBK1Q5TCY1 1321 aaPredicted RBP22.06■■□□□ 1.12
PRKDC-206ENST00000536429 EEA1Q15075 1411 aa22.06■■□□□ 1.12
PRKDC-206ENST00000536429 DISP1Q96F81 1524 aa22.06■■□□□ 1.12
PRKDC-206ENST00000536429 UGGT2Q9NYU1 1516 aa22.05■■□□□ 1.12
PRKDC-206ENST00000536429 CARMIL2Q6F5E8 1435 aa22.05■■□□□ 1.12
PRKDC-206ENST00000536429 PTPRGP23470 1445 aa22.04■■□□□ 1.12
PRKDC-206ENST00000536429 TNIKQ9UKE5 1360 aa22.03■■□□□ 1.12
PRKDC-206ENST00000536429 ADCY10Q96PN6 1610 aa21.98■■□□□ 1.11
PRKDC-206ENST00000536429 CTTNBP2Q8WZ74 1663 aa21.97■■□□□ 1.11
PRKDC-206ENST00000536429 KIAA0556O60303 1618 aa21.95■■□□□ 1.1
PRKDC-206ENST00000536429 NPM1P06748 294 aaKnown RBP eCLIP21.89■■□□□ 1.09
PRKDC-206ENST00000536429 EHMT2Q96KQ7 1210 aa21.89■■□□□ 1.09
PRKDC-206ENST00000536429 UACAQ9BZF9 1416 aa21.88■■□□□ 1.09
PRKDC-206ENST00000536429 GOLGA3Q08378 1498 aa21.87■■□□□ 1.09
PRKDC-206ENST00000536429 KIF21BO75037 1637 aa21.86■■□□□ 1.09
PRKDC-206ENST00000536429 P3H3Q8IVL6 736 aa21.85■■□□□ 1.09
PRKDC-206ENST00000536429 UHRF1BP1LA0JNW5 1464 aa21.84■■□□□ 1.09
PRKDC-206ENST00000536429 MAPKBP1O60336 1514 aa21.84■■□□□ 1.09
PRKDC-206ENST00000536429 ABCC2Q92887 1545 aa21.84■■□□□ 1.09
PRKDC-206ENST00000536429 RANGAP1P46060 587 aaPredicted RBP21.83■■□□□ 1.09
PRKDC-206ENST00000536429 PLB1Q6P1J6 1458 aa21.81■■□□□ 1.08
PRKDC-206ENST00000536429 ABCC10Q5T3U5 1492 aa21.78■■□□□ 1.08
PRKDC-206ENST00000536429 FAM69CQ0P6D2 419 aa21.78■■□□□ 1.08
PRKDC-206ENST00000536429 SAMD9Q5K651 1589 aa21.76■■□□□ 1.07
PRKDC-206ENST00000536429 UBTFP17480 764 aaKnown RBP21.75■■□□□ 1.07
PRKDC-206ENST00000536429 KDM5BQ9UGL1 1544 aa21.75■■□□□ 1.07
PRKDC-206ENST00000536429 ASXL2Q76L83 1435 aa21.74■■□□□ 1.07
PRKDC-206ENST00000536429 ABCA8O94911 1581 aa21.74■■□□□ 1.07
PRKDC-206ENST00000536429 KIF13AQ9H1H9 1805 aa21.73■■□□□ 1.07
PRKDC-206ENST00000536429 DIP2BQ9P265 1576 aa21.73■■□□□ 1.07
PRKDC-206ENST00000536429 FHOD3Q2V2M9 1422 aa21.71■■□□□ 1.07
PRKDC-206ENST00000536429 ZCCHC11Q5TAX3 1644 aaKnown RBP21.68■■□□□ 1.06
PRKDC-206ENST00000536429 ARID3CA6NKF2 412 aa21.67■■□□□ 1.06
PRKDC-206ENST00000536429 EFCAB5A4FU69 1503 aa21.6■■□□□ 1.05
PRKDC-206ENST00000536429 EPRSP07814 1512 aaKnown RBP21.6■■□□□ 1.05
PRKDC-206ENST00000536429 ATP10BO94823 1461 aa21.59■■□□□ 1.05
PRKDC-206ENST00000536429 WDR7Q9Y4E6 1490 aa21.58■■□□□ 1.05
PRKDC-206ENST00000536429 ARHGAP35Q9NRY4 1499 aa21.58■■□□□ 1.04
PRKDC-206ENST00000536429 RAPGEF6Q8TEU7 1601 aa21.56■■□□□ 1.04
PRKDC-206ENST00000536429 GLI2P10070 1586 aa21.56■■□□□ 1.04
PRKDC-206ENST00000536429 NUP153P49790 1475 aaKnown RBP21.55■■□□□ 1.04
PRKDC-206ENST00000536429 KCNH8Q96L42 1107 aa21.53■■□□□ 1.04
PRKDC-206ENST00000536429 TSPOAP1O95153 1857 aa21.5■■□□□ 1.03
PRKDC-206ENST00000536429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.48■■□□□ 1.03
PRKDC-206ENST00000536429 HNRNPUL2Q1KMD3 747 aaKnown RBP21.48■■□□□ 1.03
PRKDC-206ENST00000536429 PPRC1Q5VV67 1664 aaKnown RBP21.47■■□□□ 1.03
PRKDC-206ENST00000536429 MAP3K4Q9Y6R4 1608 aa21.45■■□□□ 1.02
PRKDC-206ENST00000536429 FMN1Q68DA7 1419 aa21.43■■□□□ 1.02
PRKDC-206ENST00000536429 CD109Q6YHK3 1445 aa21.41■■□□□ 1.02
PRKDC-206ENST00000536429 CDK13Q14004 1512 aaKnown RBP21.4■■□□□ 1.02
PRKDC-206ENST00000536429 ATP1B4Q9UN42 357 aaPredicted RBP21.4■■□□□ 1.02
PRKDC-206ENST00000536429 CLIP1P30622 1438 aa21.38■■□□□ 1.01
PRKDC-206ENST00000536429 KDM6BO15054 1643 aa21.38■■□□□ 1.01
PRKDC-206ENST00000536429 COL17A1Q9UMD9 1497 aaPredicted RBP21.38■■□□□ 1.01
PRKDC-206ENST00000536429 LOC105371045A0A1W2PR82 267 aa21.36■■□□□ 1.01
PRKDC-206ENST00000536429 MAGI3Q5TCQ9 1506 aa21.35■■□□□ 1.01
PRKDC-206ENST00000536429 TEX14Q8IWB6 1497 aa21.35■■□□□ 1.01
PRKDC-206ENST00000536429 PLEKHD1A6NEE1 506 aa21.35■■□□□ 1.01
PRKDC-206ENST00000536429 CFAP43Q8NDM7 1665 aa21.33■■□□□ 1
PRKDC-206ENST00000536429 HECW1Q76N89 1606 aa21.32■■□□□ 1
PRKDC-206ENST00000536429 ABCA9Q8IUA7 1624 aa21.3■■□□□ 1
PRKDC-206ENST00000536429 CASKIN1Q8WXD9 1431 aa21.29■■□□□ 1
PRKDC-206ENST00000536429 PCF11O94913 1555 aaKnown RBP21.28■■□□□ 1
PRKDC-206ENST00000536429 CEP162Q5TB80 1403 aa21.28■■□□□ 1
PRKDC-206ENST00000536429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.24■□□□□ 0.99
PRKDC-206ENST00000536429 LRRIQ1Q96JM4 1722 aa21.23■□□□□ 0.99
PRKDC-206ENST00000536429 TTC37Q6PGP7 1564 aa21.21■□□□□ 0.99
PRKDC-206ENST00000536429 FYCO1Q9BQS8 1478 aa21.2■□□□□ 0.98
PRKDC-206ENST00000536429 CDK11AQ9UQ88 783 aaPredicted RBP21.2■□□□□ 0.98
PRKDC-206ENST00000536429 TROQ12816 1431 aaPredicted RBP21.19■□□□□ 0.98
PRKDC-206ENST00000536429 CCDC18Q5T9S5 1454 aa21.17■□□□□ 0.98
PRKDC-206ENST00000536429 ARAP3Q8WWN8 1544 aa21.16■□□□□ 0.98
PRKDC-206ENST00000536429 KIF14Q15058 1648 aa21.15■□□□□ 0.98
PRKDC-206ENST00000536429 NEO1Q92859 1461 aa21.15■□□□□ 0.98
PRKDC-206ENST00000536429 RAPGEF3O95398 923 aa21.14■□□□□ 0.97
PRKDC-206ENST00000536429 PHLDB1Q86UU1 1377 aa21.13■□□□□ 0.97
PRKDC-206ENST00000536429 FANCAO15360 1455 aa21.12■□□□□ 0.97
PRKDC-206ENST00000536429 PLCH2O75038 1416 aa21.12■□□□□ 0.97
PRKDC-206ENST00000536429 AKNAQ7Z591 1439 aa21.11■□□□□ 0.97
PRKDC-206ENST00000536429 KDM4FA0A1W2PPD8 638 aa21.07■□□□□ 0.96
PRKDC-206ENST00000536429 FRMPD1Q5SYB0 1578 aa21.06■□□□□ 0.96
PRKDC-206ENST00000536429 DENND4BO75064 1496 aaPredicted RBP21.03■□□□□ 0.96
PRKDC-206ENST00000536429 AEBP2Q6ZN18 517 aaPredicted RBP21.03■□□□□ 0.96
PRKDC-206ENST00000536429 EFCAB2Q5VUJ9 269 aa21.02■□□□□ 0.96
PRKDC-206ENST00000536429 CFAP74Q9C0B2 1584 aa21.01■□□□□ 0.95
PRKDC-206ENST00000536429 ADGRL1O94910 1474 aa21.01■□□□□ 0.95
PRKDC-206ENST00000536429 VPS8Q8N3P4 1428 aa21■□□□□ 0.95
PRKDC-206ENST00000536429 SCAPERQ9BY12 1400 aa21■□□□□ 0.95
PRKDC-206ENST00000536429 ARHGAP5Q13017 1502 aa20.99■□□□□ 0.95
PRKDC-206ENST00000536429 MYO5CQ9NQX4 1742 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms