RNA–Protein interactions for RNA: ENST00000535927.5

VAMP1-205, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 578 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-205ENST00000535927 ARHGEF11O15085 1522 aa26.39■■□□□ 1.82
VAMP1-205ENST00000535927 NUP160Q12769 1436 aa26.39■■□□□ 1.81
VAMP1-205ENST00000535927 UBTFP17480 764 aaKnown RBP26.33■■□□□ 1.81
VAMP1-205ENST00000535927 KIAA0586Q9BVV6 1533 aa26.33■■□□□ 1.81
VAMP1-205ENST00000535927 TNIKQ9UKE5 1360 aa26.3■■□□□ 1.8
VAMP1-205ENST00000535927 CYB5RLQ6IPT4 315 aa26.28■■□□□ 1.8
VAMP1-205ENST00000535927 CEP170Q5SW79 1584 aa26.27■■□□□ 1.8
VAMP1-205ENST00000535927 CTTNBP2Q8WZ74 1663 aa26.26■■□□□ 1.79
VAMP1-205ENST00000535927 IQGAP2Q13576 1575 aa26.2■■□□□ 1.79
VAMP1-205ENST00000535927 CLASP1Q7Z460 1538 aa26.19■■□□□ 1.78
VAMP1-205ENST00000535927 LOC105371045A0A1W2PR82 267 aa26.19■■□□□ 1.78
VAMP1-205ENST00000535927 TRHP20396 242 aaPredicted RBP26.18■■□□□ 1.78
VAMP1-205ENST00000535927 JPH4Q96JJ6 628 aa26.16■■□□□ 1.78
VAMP1-205ENST00000535927 UGGT2Q9NYU1 1516 aa26.12■■□□□ 1.77
VAMP1-205ENST00000535927 SHROOM2Q13796 1616 aa26.1■■□□□ 1.77
VAMP1-205ENST00000535927 EHMT2Q96KQ7 1210 aa26.1■■□□□ 1.77
VAMP1-205ENST00000535927 ARAP1Q96P48 1450 aa26.09■■□□□ 1.77
VAMP1-205ENST00000535927 CARMIL2Q6F5E8 1435 aa26.06■■□□□ 1.76
VAMP1-205ENST00000535927 EFCAB5A4FU69 1503 aa26.04■■□□□ 1.76
VAMP1-205ENST00000535927 PRG4Q92954 1404 aaPredicted RBP25.98■■□□□ 1.75
VAMP1-205ENST00000535927 CLIP1P30622 1438 aa25.97■■□□□ 1.75
VAMP1-205ENST00000535927 CEP162Q5TB80 1403 aa25.97■■□□□ 1.75
VAMP1-205ENST00000535927 SAMD9Q5K651 1589 aa25.96■■□□□ 1.75
VAMP1-205ENST00000535927 DISP1Q96F81 1524 aa25.93■■□□□ 1.74
VAMP1-205ENST00000535927 KIAA0556O60303 1618 aa25.91■■□□□ 1.74
VAMP1-205ENST00000535927 ARHGAP35Q9NRY4 1499 aa25.89■■□□□ 1.73
VAMP1-205ENST00000535927 RANGAP1P46060 587 aaPredicted RBP25.84■■□□□ 1.73
VAMP1-205ENST00000535927 FMN1Q68DA7 1419 aa25.82■■□□□ 1.72
VAMP1-205ENST00000535927 PTPRGP23470 1445 aa25.81■■□□□ 1.72
VAMP1-205ENST00000535927 AEBP2Q6ZN18 517 aaPredicted RBP25.78■■□□□ 1.72
VAMP1-205ENST00000535927 P3H3Q8IVL6 736 aa25.76■■□□□ 1.71
VAMP1-205ENST00000535927 ERCC6L2Q5T890 1561 aa25.75■■□□□ 1.71
VAMP1-205ENST00000535927 FHOD3Q2V2M9 1422 aa25.75■■□□□ 1.71
VAMP1-205ENST00000535927 VPS8Q8N3P4 1428 aa25.68■■□□□ 1.7
VAMP1-205ENST00000535927 UACAQ9BZF9 1416 aa25.65■■□□□ 1.7
VAMP1-205ENST00000535927 UHRF1BP1LA0JNW5 1464 aa25.64■■□□□ 1.69
VAMP1-205ENST00000535927 CASKIN1Q8WXD9 1431 aa25.63■■□□□ 1.69
VAMP1-205ENST00000535927 ABCA8O94911 1581 aa25.62■■□□□ 1.69
VAMP1-205ENST00000535927 FYCO1Q9BQS8 1478 aa25.6■■□□□ 1.69
VAMP1-205ENST00000535927 RAPGEF6Q8TEU7 1601 aa25.59■■□□□ 1.69
VAMP1-205ENST00000535927 ABCC2Q92887 1545 aa25.57■■□□□ 1.68
VAMP1-205ENST00000535927 PLB1Q6P1J6 1458 aa25.55■■□□□ 1.68
VAMP1-205ENST00000535927 TTBK1Q5TCY1 1321 aaPredicted RBP25.55■■□□□ 1.68
VAMP1-205ENST00000535927 HECW1Q76N89 1606 aa25.55■■□□□ 1.68
VAMP1-205ENST00000535927 CCDC18Q5T9S5 1454 aa25.51■■□□□ 1.67
VAMP1-205ENST00000535927 NPM1P06748 294 aaKnown RBP eCLIP25.5■■□□□ 1.67
VAMP1-205ENST00000535927 APLP2Q06481 763 aa25.5■■□□□ 1.67
VAMP1-205ENST00000535927 MAP3K1Q13233 1512 aa25.49■■□□□ 1.67
VAMP1-205ENST00000535927 PCF11O94913 1555 aaKnown RBP25.48■■□□□ 1.67
VAMP1-205ENST00000535927 KDM5BQ9UGL1 1544 aa25.47■■□□□ 1.67
VAMP1-205ENST00000535927 NUP153P49790 1475 aaKnown RBP25.47■■□□□ 1.67
VAMP1-205ENST00000535927 CDK11AQ9UQ88 783 aaPredicted RBP25.47■■□□□ 1.67
VAMP1-205ENST00000535927 ADCY10Q96PN6 1610 aa25.45■■□□□ 1.67
VAMP1-205ENST00000535927 ATP1B4Q9UN42 357 aaPredicted RBP25.45■■□□□ 1.66
VAMP1-205ENST00000535927 EPRSP07814 1512 aaKnown RBP25.44■■□□□ 1.66
VAMP1-205ENST00000535927 ATP10BO94823 1461 aa25.41■■□□□ 1.66
VAMP1-205ENST00000535927 PLEKHD1A6NEE1 506 aa25.36■■□□□ 1.65
VAMP1-205ENST00000535927 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.34■■□□□ 1.65
VAMP1-205ENST00000535927 HNRNPUL2Q1KMD3 747 aaKnown RBP25.34■■□□□ 1.65
VAMP1-205ENST00000535927 ZCCHC11Q5TAX3 1644 aaKnown RBP25.34■■□□□ 1.65
VAMP1-205ENST00000535927 TIAM1Q13009 1591 aa25.33■■□□□ 1.65
VAMP1-205ENST00000535927 LRRIQ1Q96JM4 1722 aa25.32■■□□□ 1.64
VAMP1-205ENST00000535927 CFAP43Q8NDM7 1665 aa25.31■■□□□ 1.64
VAMP1-205ENST00000535927 MAPKBP1O60336 1514 aa25.29■■□□□ 1.64
VAMP1-205ENST00000535927 CDK13Q14004 1512 aaKnown RBP25.28■■□□□ 1.64
VAMP1-205ENST00000535927 MTUS2Q5JR59 1369 aa25.25■■□□□ 1.63
VAMP1-205ENST00000535927 TROQ12816 1431 aaPredicted RBP25.25■■□□□ 1.63
VAMP1-205ENST00000535927 KIF13AQ9H1H9 1805 aa25.23■■□□□ 1.63
VAMP1-205ENST00000535927 LRRC9Q6ZRR7 1453 aa25.23■■□□□ 1.63
VAMP1-205ENST00000535927 ASXL2Q76L83 1435 aa25.22■■□□□ 1.63
VAMP1-205ENST00000535927 ARID3CA6NKF2 412 aa25.22■■□□□ 1.63
VAMP1-205ENST00000535927 EHBP1L1Q8N3D4 1523 aa25.22■■□□□ 1.63
VAMP1-205ENST00000535927 WDR7Q9Y4E6 1490 aa25.21■■□□□ 1.63
VAMP1-205ENST00000535927 KANK4Q5T7N3 995 aaPredicted RBP25.14■■□□□ 1.62
VAMP1-205ENST00000535927 SUPT6HQ7KZ85 1726 aaKnown RBP25.12■■□□□ 1.61
VAMP1-205ENST00000535927 MAGI3Q5TCQ9 1506 aa25.12■■□□□ 1.61
VAMP1-205ENST00000535927 KIF14Q15058 1648 aa25.11■■□□□ 1.61
VAMP1-205ENST00000535927 GLI2P10070 1586 aa25.09■■□□□ 1.61
VAMP1-205ENST00000535927 ABCC10Q5T3U5 1492 aa25.08■■□□□ 1.6
VAMP1-205ENST00000535927 FAM69CQ0P6D2 419 aa25.07■■□□□ 1.6
VAMP1-205ENST00000535927 KCNH8Q96L42 1107 aa25.07■■□□□ 1.6
VAMP1-205ENST00000535927 NCOA2Q15596 1464 aa25.03■■□□□ 1.6
VAMP1-205ENST00000535927 ABCA9Q8IUA7 1624 aa25.03■■□□□ 1.6
VAMP1-205ENST00000535927 CCNB3Q8WWL7 1395 aa25■■□□□ 1.59
VAMP1-205ENST00000535927 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25■■□□□ 1.59
VAMP1-205ENST00000535927 ARAP3Q8WWN8 1544 aa24.99■■□□□ 1.59
VAMP1-205ENST00000535927 DIP2BQ9P265 1576 aa24.98■■□□□ 1.59
VAMP1-205ENST00000535927 MIA2Q96PC5 1412 aa24.95■■□□□ 1.59
VAMP1-205ENST00000535927 PLCH2O75038 1416 aa24.95■■□□□ 1.58
VAMP1-205ENST00000535927 ITSN2Q9NZM3 1697 aa24.94■■□□□ 1.58
VAMP1-205ENST00000535927 CD109Q6YHK3 1445 aa24.94■■□□□ 1.58
VAMP1-205ENST00000535927 GPATCH8Q9UKJ3 1502 aaKnown RBP24.93■■□□□ 1.58
VAMP1-205ENST00000535927 MYO5CQ9NQX4 1742 aa24.93■■□□□ 1.58
VAMP1-205ENST00000535927 MYOM3Q5VTT5 1437 aa24.93■■□□□ 1.58
VAMP1-205ENST00000535927 PHLDB1Q86UU1 1377 aa24.92■■□□□ 1.58
VAMP1-205ENST00000535927 MAP3K4Q9Y6R4 1608 aa24.91■■□□□ 1.58
VAMP1-205ENST00000535927 TTC37Q6PGP7 1564 aa24.9■■□□□ 1.58
VAMP1-205ENST00000535927 EFCAB2Q5VUJ9 269 aa24.9■■□□□ 1.58
VAMP1-205ENST00000535927 KDM6BO15054 1643 aa24.9■■□□□ 1.58
VAMP1-205ENST00000535927 TSPOAP1O95153 1857 aa24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms