RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 SOGA1O94964 1423 aa12.46□□□□□ -0.41
CD44-237ENST00000534082 GRIN2BQ13224 1484 aa12.44□□□□□ -0.42
CD44-237ENST00000534082 ERCC6L2Q5T890 1561 aa12.41□□□□□ -0.42
CD44-237ENST00000534082 FGD5Q6ZNL6 1462 aa12.4□□□□□ -0.42
CD44-237ENST00000534082 KIF13AQ9H1H9 1805 aa12.4□□□□□ -0.42
CD44-237ENST00000534082 PBRM1Q86U86 1689 aa12.36□□□□□ -0.43
CD44-237ENST00000534082 KDM4FA0A1W2PPD8 638 aa12.36□□□□□ -0.43
CD44-237ENST00000534082 CACNB1Q02641 598 aaPredicted RBP12.35□□□□□ -0.43
CD44-237ENST00000534082 CEP170Q5SW79 1584 aa12.33□□□□□ -0.44
CD44-237ENST00000534082 CUX1P39880 1505 aa12.31□□□□□ -0.44
CD44-237ENST00000534082 RNF39Q9H2S5 420 aa12.3□□□□□ -0.44
CD44-237ENST00000534082 GRIN2AQ12879 1464 aa12.29□□□□□ -0.44
CD44-237ENST00000534082 KDM6BO15054 1643 aa12.29□□□□□ -0.44
CD44-237ENST00000534082 ABCC10Q5T3U5 1492 aa12.27□□□□□ -0.44
CD44-237ENST00000534082 SHROOM2Q13796 1616 aa12.27□□□□□ -0.44
CD44-237ENST00000534082 ABCA5Q8WWZ7 1642 aa12.27□□□□□ -0.44
CD44-237ENST00000534082 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.27□□□□□ -0.45
CD44-237ENST00000534082 NUP160Q12769 1436 aa12.27□□□□□ -0.45
CD44-237ENST00000534082 FAM69CQ0P6D2 419 aa12.25□□□□□ -0.45
CD44-237ENST00000534082 DIP2BQ9P265 1576 aa12.25□□□□□ -0.45
CD44-237ENST00000534082 ADAMTS12P58397 1594 aa12.23□□□□□ -0.45
CD44-237ENST00000534082 MAPKBP1O60336 1514 aa12.22□□□□□ -0.45
CD44-237ENST00000534082 ABCA10Q8WWZ4 1543 aa12.22□□□□□ -0.45
CD44-237ENST00000534082 HECW2Q9P2P5 1572 aa12.19□□□□□ -0.46
CD44-237ENST00000534082 ADGRL1O94910 1474 aa12.18□□□□□ -0.46
CD44-237ENST00000534082 PRG4Q92954 1404 aaPredicted RBP12.18□□□□□ -0.46
CD44-237ENST00000534082 NPM1P06748 294 aaKnown RBP eCLIP12.15□□□□□ -0.46
CD44-237ENST00000534082 FHAD1B1AJZ9 1412 aa12.14□□□□□ -0.47
CD44-237ENST00000534082 C1QBPQ07021 282 aaKnown RBP12.14□□□□□ -0.47
CD44-237ENST00000534082 TSPOAP1O95153 1857 aa12.14□□□□□ -0.47
CD44-237ENST00000534082 ADCY10Q96PN6 1610 aa12.14□□□□□ -0.47
CD44-237ENST00000534082 RUSC2Q8N2Y8 1516 aa12.08□□□□□ -0.48
CD44-237ENST00000534082 FBXO41Q8TF61 875 aa12.08□□□□□ -0.48
CD44-237ENST00000534082 JPH4Q96JJ6 628 aa12.08□□□□□ -0.48
CD44-237ENST00000534082 ERICH3Q5RHP9 1530 aa12.06□□□□□ -0.48
CD44-237ENST00000534082 WRNQ14191 1432 aaPredicted RBP eCLIP12.05□□□□□ -0.48
CD44-237ENST00000534082 PPRC1Q5VV67 1664 aaKnown RBP12.03□□□□□ -0.48
CD44-237ENST00000534082 GLI2P10070 1586 aa11.98□□□□□ -0.49
CD44-237ENST00000534082 COL17A1Q9UMD9 1497 aaPredicted RBP11.97□□□□□ -0.49
CD44-237ENST00000534082 U3KPZ7 1027 aaPredicted RBP11.97□□□□□ -0.49
CD44-237ENST00000534082 LMTK3Q96Q04 1460 aa11.96□□□□□ -0.49
CD44-237ENST00000534082 BIVM-ERCC5R4GMW8 1640 aa11.96□□□□□ -0.5
CD44-237ENST00000534082 TOP2BQ02880 1626 aa11.95□□□□□ -0.5
CD44-237ENST00000534082 ASXL2Q76L83 1435 aa11.94□□□□□ -0.5
CD44-237ENST00000534082 ABCC2Q92887 1545 aa11.94□□□□□ -0.5
CD44-237ENST00000534082 PLB1Q6P1J6 1458 aa11.94□□□□□ -0.5
CD44-237ENST00000534082 SLC4A2P04920 1241 aa11.93□□□□□ -0.5
CD44-237ENST00000534082 KIAA0586Q9BVV6 1533 aa11.91□□□□□ -0.5
CD44-237ENST00000534082 TEX14Q8IWB6 1497 aa11.9□□□□□ -0.5
CD44-237ENST00000534082 MAP3K4Q9Y6R4 1608 aa11.9□□□□□ -0.5
CD44-237ENST00000534082 PTPRGP23470 1445 aa11.9□□□□□ -0.5
CD44-237ENST00000534082 CUL7Q14999 1698 aa11.88□□□□□ -0.51
CD44-237ENST00000534082 EPRSP07814 1512 aaKnown RBP11.87□□□□□ -0.51
CD44-237ENST00000534082 TTBK1Q5TCY1 1321 aaPredicted RBP11.86□□□□□ -0.51
CD44-237ENST00000534082 UHRF1BP1LA0JNW5 1464 aa11.84□□□□□ -0.51
CD44-237ENST00000534082 TNIKQ9UKE5 1360 aa11.84□□□□□ -0.51
CD44-237ENST00000534082 SOCS7O14512 581 aa11.83□□□□□ -0.52
CD44-237ENST00000534082 SLC4A1APQ9BWU0 796 aaKnown RBP11.83□□□□□ -0.52
CD44-237ENST00000534082 KIF21BO75037 1637 aa11.82□□□□□ -0.52
CD44-237ENST00000534082 CARMIL2Q6F5E8 1435 aa11.81□□□□□ -0.52
CD44-237ENST00000534082 UACAQ9BZF9 1416 aa11.8□□□□□ -0.52
CD44-237ENST00000534082 CAPN15O75808 1086 aa11.8□□□□□ -0.52
CD44-237ENST00000534082 ILDR2Q71H61 639 aa11.8□□□□□ -0.52
CD44-237ENST00000534082 KDM5BQ9UGL1 1544 aa11.8□□□□□ -0.52
CD44-237ENST00000534082 PTPRMP28827 1452 aa11.78□□□□□ -0.52
CD44-237ENST00000534082 ZCCHC11Q5TAX3 1644 aaKnown RBP11.78□□□□□ -0.52
CD44-237ENST00000534082 DISP3Q9P2K9 1392 aa11.78□□□□□ -0.52
CD44-237ENST00000534082 PCF11O94913 1555 aaKnown RBP11.77□□□□□ -0.53
CD44-237ENST00000534082 SPINK5Q9NQ38 1064 aaPredicted RBP11.77□□□□□ -0.53
CD44-237ENST00000534082 WDR7Q9Y4E6 1490 aa11.75□□□□□ -0.53
CD44-237ENST00000534082 MAGI3Q5TCQ9 1506 aa11.75□□□□□ -0.53
CD44-237ENST00000534082 IGF1RP08069 1367 aa11.74□□□□□ -0.53
CD44-237ENST00000534082 IQGAP2Q13576 1575 aa11.74□□□□□ -0.53
CD44-237ENST00000534082 ADAMTSL3P82987 1691 aa11.73□□□□□ -0.53
CD44-237ENST00000534082 DISP1Q96F81 1524 aa11.72□□□□□ -0.53
CD44-237ENST00000534082 CFAP43Q8NDM7 1665 aa11.71□□□□□ -0.53
CD44-237ENST00000534082 CD109Q6YHK3 1445 aa11.71□□□□□ -0.53
CD44-237ENST00000534082 KIF27Q86VH2 1401 aa11.69□□□□□ -0.54
CD44-237ENST00000534082 SPATA31D1Q6ZQQ2 1576 aa11.69□□□□□ -0.54
CD44-237ENST00000534082 MADDQ8WXG6 1647 aa11.68□□□□□ -0.54
CD44-237ENST00000534082 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.68□□□□□ -0.54
CD44-237ENST00000534082 HNRNPUL2Q1KMD3 747 aaKnown RBP11.68□□□□□ -0.54
CD44-237ENST00000534082 CERKQ8TCT0 537 aa11.68□□□□□ -0.54
CD44-237ENST00000534082 APLP2Q06481 763 aa11.66□□□□□ -0.54
CD44-237ENST00000534082 BCORL1Q5H9F3 1711 aa11.66□□□□□ -0.54
CD44-237ENST00000534082 ARAP3Q8WWN8 1544 aa11.65□□□□□ -0.54
CD44-237ENST00000534082 KIAA0556O60303 1618 aa11.65□□□□□ -0.54
CD44-237ENST00000534082 CARMIL1Q5VZK9 1371 aa11.65□□□□□ -0.55
CD44-237ENST00000534082 UGGT2Q9NYU1 1516 aa11.64□□□□□ -0.55
CD44-237ENST00000534082 HSPA2P54652 639 aa11.63□□□□□ -0.55
CD44-237ENST00000534082 SAMD1Q6SPF0 538 aaPredicted RBP11.62□□□□□ -0.55
CD44-237ENST00000534082 MYCNP04198 464 aaPredicted RBP11.61□□□□□ -0.55
CD44-237ENST00000534082 KCNH8Q96L42 1107 aa11.61□□□□□ -0.55
CD44-237ENST00000534082 RIMS1Q86UR5 1692 aaKnown RBP11.61□□□□□ -0.55
CD44-237ENST00000534082 DSG3P32926 999 aa11.6□□□□□ -0.55
CD44-237ENST00000534082 FOXD4L1Q9NU39 408 aa11.59□□□□□ -0.55
CD44-237ENST00000534082 ARID4BQ4LE39 1312 aaPredicted RBP11.59□□□□□ -0.55
CD44-237ENST00000534082 SUPT5HO00267 1087 aaKnown RBP11.57□□□□□ -0.56
CD44-237ENST00000534082 ABCA8O94911 1581 aa11.57□□□□□ -0.56
CD44-237ENST00000534082 FRMPD1Q5SYB0 1578 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms